Wall clock time and date at job start Tue Mar 31 2020 19:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 N 1.46498 * 109.47043 * 174.99892 * 4 2 1 6 6 C 1.46498 * 120.00326 * 90.00104 * 5 4 2 7 7 C 1.34772 * 119.99821 * 269.99358 * 5 4 2 8 8 O 1.21280 * 120.00242 * 0.02562 * 7 5 4 9 9 C 1.50706 * 119.99951 * 180.02562 * 7 5 4 10 10 C 1.50701 * 109.46939 * 180.02562 * 9 7 5 11 11 C 1.34671 * 126.59080 * 85.02941 * 10 9 7 12 12 N 1.34127 * 108.02329 * 179.97438 * 11 10 9 13 13 C 1.30500 * 109.25268 * 359.97438 * 12 11 10 14 14 N 1.35046 * 108.70191 * 359.77019 * 13 12 11 15 15 C 1.46492 * 126.39950 * 180.26368 * 14 13 12 16 16 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 17 17 C 1.46898 * 110.99888 * 85.00162 * 16 2 1 18 18 C 1.50705 * 109.46661 * 180.02562 * 17 16 2 19 19 O 1.21288 * 120.00125 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99549 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00062 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99229 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00207 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00252 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00305 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47102 * 89.99542 * 25 23 21 27 27 H 1.48493 * 109.47421 * 209.99846 * 25 23 21 28 28 H 1.48497 * 109.46772 * 330.00472 * 25 23 21 29 29 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 30 30 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 32 32 H 1.09004 * 109.46848 * 294.99959 * 4 2 1 33 33 H 1.08999 * 109.47502 * 54.99555 * 4 2 1 34 34 H 1.08997 * 109.47736 * 89.99214 * 6 5 4 35 35 H 1.08996 * 109.47163 * 210.00168 * 6 5 4 36 36 H 1.09005 * 109.46872 * 329.99919 * 6 5 4 37 37 H 1.09002 * 109.46748 * 300.00232 * 9 7 5 38 38 H 1.08997 * 109.46958 * 59.99878 * 9 7 5 39 39 H 1.08006 * 125.98811 * 359.95679 * 11 10 9 40 40 H 1.08005 * 125.64821 * 179.97438 * 13 12 11 41 41 H 1.09004 * 109.47841 * 270.12388 * 15 14 13 42 42 H 1.09001 * 109.47086 * 30.12205 * 15 14 13 43 43 H 1.09000 * 109.47197 * 150.12005 * 15 14 13 44 44 H 1.00902 * 110.99923 * 208.96103 * 16 2 1 45 45 H 1.08995 * 109.47296 * 299.99911 * 17 16 2 46 46 H 1.08997 * 109.47334 * 60.00212 * 17 16 2 47 47 H 0.97003 * 120.00664 * 0.02562 * 20 18 17 48 48 H 0.97002 * 120.00635 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1904 6 6 4.3343 0.2338 1.7612 7 6 4.0756 -1.8988 0.6114 8 8 3.3849 -2.7765 0.1386 9 6 5.5775 -2.0073 0.5515 10 6 5.9613 -3.2894 -0.1413 11 6 6.0743 -3.4815 -1.4694 12 7 6.4348 -4.7570 -1.6750 13 6 6.5500 -5.3624 -0.5247 14 7 6.2685 -4.4807 0.4587 15 6 6.2856 -4.7498 1.8986 16 7 2.0196 -0.6925 -1.1995 17 6 2.0824 0.2227 -2.3469 18 6 2.5872 -0.5217 -3.5561 19 8 2.8675 -1.6986 -3.4703 20 7 2.7271 0.1204 -4.7327 21 6 3.1869 -0.5566 -5.8327 22 1 3.4365 -1.6046 -5.7563 23 6 3.3306 0.1052 -7.0459 24 7 3.7708 -0.5438 -8.1004 25 14 2.8982 1.9177 -7.1782 26 1 4.0987 2.7366 -6.8726 27 1 2.4330 2.2163 -8.5564 28 1 1.8192 2.2409 -6.2105 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7516 -0.1585 2.1369 33 1 1.6053 -1.7199 1.2950 34 1 4.5424 0.0090 2.8073 35 1 5.2721 0.2950 1.2091 36 1 3.8090 1.1864 1.6919 37 1 5.9811 -1.1601 -0.0031 38 1 5.9826 -2.0052 1.5634 39 1 5.9042 -2.7388 -2.2349 40 1 6.8279 -6.3963 -0.3826 41 1 5.3003 -5.0912 2.2163 42 1 7.0246 -5.5212 2.1153 43 1 6.5446 -3.8374 2.4357 44 1 2.9172 -1.1206 -1.0288 45 1 1.0870 0.6165 -2.5525 46 1 2.7588 1.0462 -2.1182 47 1 2.5033 1.0618 -4.8013 48 1 3.8716 -0.0817 -8.9473 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725518959.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:02 Heat of formation + Delta-G solvation = -17.072298 kcal Electronic energy + Delta-G solvation = -30428.711655 eV Core-core repulsion = 26326.498883 eV Total energy + Delta-G solvation = -4102.212772 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.07521 -41.18002 -40.21640 -37.87466 -36.19138 -35.80275 -34.98640 -33.77539 -33.31993 -32.08826 -28.83354 -28.27893 -27.92030 -27.75592 -26.29841 -25.47122 -22.46120 -21.93797 -21.32194 -21.09089 -20.35938 -19.94107 -18.22773 -18.01687 -17.98581 -17.37295 -16.98506 -16.66652 -16.51321 -16.30352 -15.94343 -15.58248 -15.28508 -14.92452 -14.75045 -14.55322 -14.38815 -14.26306 -14.07036 -14.01517 -13.75460 -13.58368 -13.47440 -13.34376 -13.21003 -12.99239 -12.95595 -12.89668 -12.57040 -12.43780 -12.35937 -11.98212 -11.94474 -11.51966 -10.95249 -10.91122 -10.46737 -10.42581 -10.25449 -9.63735 -9.33970 -9.23121 -8.41254 -6.02907 0.98001 1.27923 1.34421 1.43708 1.60918 1.89348 1.95181 2.05740 2.22571 2.26299 2.74773 3.14104 3.41316 3.50486 3.75714 3.86912 3.92656 3.96465 4.04572 4.11726 4.25358 4.27018 4.32680 4.35797 4.45381 4.47252 4.50945 4.51641 4.57788 4.68998 4.74831 4.82035 4.90247 4.95334 5.00706 5.09046 5.32757 5.39125 5.53047 5.59700 5.74897 5.91878 6.15749 6.29933 6.36972 6.51005 6.60043 6.88268 7.14003 7.21724 7.38724 7.98152 8.77188 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009692 B = 0.003881 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.260925 B = 7212.108920 C = 9345.914353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.064 3.936 3 H 0.066 0.934 4 C 0.116 3.884 5 N -0.620 5.620 6 C 0.065 3.935 7 C 0.497 3.503 8 O -0.555 6.555 9 C -0.054 4.054 10 C 0.001 3.999 11 C -0.047 4.047 12 N -0.548 5.548 13 C 0.181 3.819 14 N -0.453 5.453 15 C 0.065 3.935 16 N -0.689 5.689 17 C 0.062 3.938 18 C 0.442 3.558 19 O -0.609 6.609 20 N -0.589 5.589 21 C -0.330 4.330 22 H 0.047 0.953 23 C -0.017 4.017 24 N -0.936 5.936 25 Si 0.970 3.030 26 H -0.253 1.253 27 H -0.273 1.273 28 H -0.232 1.232 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.090 0.910 32 H 0.128 0.872 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.127 0.873 38 H 0.144 0.856 39 H 0.130 0.870 40 H 0.243 0.757 41 H 0.074 0.926 42 H 0.118 0.882 43 H 0.106 0.894 44 H 0.344 0.656 45 H 0.109 0.891 46 H 0.074 0.926 47 H 0.389 0.611 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.858 7.996 32.275 33.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.046 4.046 3 H 0.084 0.916 4 C -0.007 4.007 5 N -0.354 5.354 6 C -0.076 4.076 7 C 0.285 3.715 8 O -0.431 6.431 9 C -0.095 4.095 10 C -0.115 4.115 11 C -0.195 4.195 12 N -0.267 5.267 13 C -0.102 4.102 14 N -0.136 5.136 15 C -0.075 4.075 16 N -0.328 5.328 17 C -0.070 4.070 18 C 0.230 3.770 19 O -0.493 6.493 20 N -0.232 5.232 21 C -0.459 4.459 22 H 0.065 0.935 23 C -0.215 4.215 24 N -0.577 5.577 25 Si 0.790 3.210 26 H -0.177 1.177 27 H -0.198 1.198 28 H -0.155 1.155 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.146 0.854 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.145 0.855 38 H 0.162 0.838 39 H 0.147 0.853 40 H 0.259 0.741 41 H 0.093 0.907 42 H 0.137 0.863 43 H 0.125 0.875 44 H 0.168 0.832 45 H 0.127 0.873 46 H 0.092 0.908 47 H 0.225 0.775 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.288 6.077 31.149 31.819 hybrid contribution 0.370 1.061 -0.576 1.263 sum 2.658 7.138 30.573 31.507 Atomic orbital electron populations 1.21750 0.93350 1.01678 1.02582 1.22139 0.96914 0.96566 0.89001 0.91581 1.21765 0.79161 1.01800 0.97993 1.48030 1.07302 1.21525 1.58576 1.22203 0.95544 0.89997 0.99852 1.21040 0.91163 0.81880 0.77401 1.90868 1.65513 1.41015 1.45746 1.20169 0.91754 0.93428 1.04124 1.20571 1.08543 0.89841 0.92589 1.21860 1.08127 0.94529 0.94962 1.70147 1.20953 1.07241 1.28341 1.25601 1.04196 0.98654 0.81707 1.45420 1.50226 1.08435 1.09473 1.22402 1.04723 1.05558 0.74862 1.60174 1.36188 1.32318 1.04119 1.21679 1.02485 0.93765 0.89092 1.21106 0.82448 0.88048 0.85385 1.90624 1.54700 1.18648 1.85295 1.41987 1.60816 1.11696 1.08682 1.18972 1.42420 0.95873 0.88617 0.93527 1.26184 0.96326 1.05403 0.93592 1.69828 1.46368 1.39717 1.01804 0.85299 0.80262 0.76004 0.79473 1.17719 1.19828 1.15525 0.93011 0.94044 0.89127 0.85443 0.92051 0.89624 0.90006 0.89169 0.85519 0.83785 0.85268 0.74107 0.90707 0.86335 0.87513 0.83191 0.87289 0.90843 0.77493 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.41 71.98 0.68 -2.02 16 2 C 0.06 1.41 2.95 44.91 0.13 1.54 16 3 H 0.07 1.13 7.80 -2.39 -0.02 1.12 16 4 C 0.12 2.10 5.20 86.38 0.45 2.55 16 5 N -0.62 -10.76 2.66 -846.77 -2.25 -13.01 16 6 C 0.07 0.43 10.24 127.77 1.31 1.74 16 7 C 0.50 12.94 6.04 87.66 0.53 13.47 16 8 O -0.55 -21.77 14.20 -3.03 -0.04 -21.81 16 9 C -0.05 -1.08 4.59 29.10 0.13 -0.95 16 10 C 0.00 0.02 5.45 40.95 0.22 0.24 16 11 C -0.05 -1.96 11.79 83.52 0.98 -0.97 16 12 N -0.55 -22.58 11.25 -200.30 -2.25 -24.83 16 13 C 0.18 5.20 12.56 180.26 2.26 7.46 16 14 N -0.45 -10.84 3.15 -537.89 -1.70 -12.53 16 15 C 0.06 0.70 11.00 127.77 1.41 2.11 16 16 N -0.69 -24.20 5.82 -495.58 -2.88 -27.09 16 17 C 0.06 2.19 5.97 85.56 0.51 2.70 16 18 C 0.44 22.47 7.82 87.66 0.69 23.15 16 19 O -0.61 -38.64 15.78 -3.05 -0.05 -38.69 16 20 N -0.59 -30.24 5.09 -306.99 -1.56 -31.80 16 21 C -0.33 -20.83 10.16 84.04 0.85 -19.97 16 22 H 0.05 3.55 7.39 -2.91 -0.02 3.53 16 23 C -0.02 -0.99 5.50 84.92 0.47 -0.53 16 24 N -0.94 -59.61 13.96 21.66 0.30 -59.31 16 25 Si 0.97 40.71 27.74 68.60 1.90 42.62 16 26 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H -0.23 -8.25 6.52 99.48 0.65 -7.60 16 29 H 0.05 1.09 7.45 -2.39 -0.02 1.07 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.13 1.15 8.07 -2.39 -0.02 1.13 16 33 H 0.06 1.54 7.42 -2.39 -0.02 1.52 16 34 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.08 0.44 6.44 -2.39 -0.02 0.42 16 36 H 0.09 0.35 8.07 -2.38 -0.02 0.33 16 37 H 0.13 2.21 7.40 -2.39 -0.02 2.19 16 38 H 0.14 1.37 7.05 -2.39 -0.02 1.35 16 39 H 0.13 6.15 8.06 -2.91 -0.02 6.13 16 40 H 0.24 4.41 8.06 -2.91 -0.02 4.38 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.11 0.59 7.11 -2.39 -0.02 0.57 16 44 H 0.34 13.51 4.17 -89.69 -0.37 13.14 16 45 H 0.11 3.30 7.44 -2.39 -0.02 3.28 16 46 H 0.07 2.06 8.05 -2.39 -0.02 2.04 16 47 H 0.39 16.41 5.76 -92.71 -0.53 15.87 16 48 H 0.28 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -108.34 393.83 2.11 -106.23 By element: Atomic # 1 Polarization: 49.71 SS G_CDS: 0.02 Total: 49.73 kcal Atomic # 6 Polarization: 19.89 SS G_CDS: 10.63 Total: 30.51 kcal Atomic # 7 Polarization: -158.24 SS G_CDS: -10.35 Total: -168.58 kcal Atomic # 8 Polarization: -60.41 SS G_CDS: -0.09 Total: -60.50 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 1.90 Total: 42.62 kcal Total: -108.34 2.11 -106.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725518959.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.155 kcal (2) G-P(sol) polarization free energy of solvation -108.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds