Wall clock time and date at job start Tue Mar 31 2020 20:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46675 * 2 1 4 4 N 1.46491 * 109.47191 * 120.00482 * 2 1 3 5 5 N 1.28437 * 125.19317 * 305.62254 * 4 2 1 6 6 C 1.30868 * 110.92887 * 180.28604 * 5 4 2 7 7 C 1.39677 * 107.86140 * 359.70826 * 6 5 4 8 8 C 1.36609 * 125.18787 * 125.41334 * 4 2 1 9 9 C 1.47157 * 126.88499 * 359.97438 * 8 4 2 10 10 O 1.21632 * 119.99962 * 5.21268 * 9 8 4 11 11 N 1.34777 * 120.00293 * 185.21396 * 9 8 4 12 12 C 1.46494 * 120.00218 * 174.91747 * 11 9 8 13 13 C 1.53005 * 109.47083 * 180.02562 * 12 11 9 14 14 H 1.08999 * 109.47378 * 64.99970 * 13 12 11 15 15 C 1.53000 * 109.47147 * 184.99940 * 13 12 11 16 16 N 1.46894 * 109.46874 * 304.99680 * 13 12 11 17 17 C 1.46900 * 110.99979 * 155.00196 * 16 13 12 18 18 C 1.50704 * 109.47542 * 180.02562 * 17 16 13 19 19 O 1.21294 * 119.99389 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00126 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99632 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00552 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99670 * 179.97438 * 21 20 18 24 24 N 1.31417 * 120.00004 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00085 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47143 * 60.00170 * 25 23 21 27 27 H 1.48495 * 109.47481 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47251 * 300.00545 * 25 23 21 29 29 H 1.09005 * 109.46461 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46674 * 299.99109 * 1 2 3 31 31 H 1.08998 * 109.47069 * 59.99482 * 1 2 3 32 32 H 1.09008 * 109.46676 * 240.00884 * 2 1 3 33 33 H 1.09001 * 109.46937 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47795 * 300.00073 * 3 2 1 35 35 H 1.08998 * 109.46843 * 60.00994 * 3 2 1 36 36 H 1.08001 * 126.07273 * 179.68187 * 6 5 4 37 37 H 1.07994 * 127.32085 * 179.97438 * 7 6 5 38 38 H 0.96999 * 119.99660 * 354.92014 * 11 9 8 39 39 H 1.08997 * 109.47044 * 299.99710 * 12 11 9 40 40 H 1.08995 * 109.47395 * 60.00210 * 12 11 9 41 41 H 1.08991 * 109.47199 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.47367 * 300.00064 * 15 13 12 43 43 H 1.08999 * 109.46957 * 59.99773 * 15 13 12 44 44 H 1.00906 * 111.00366 * 31.04842 * 16 13 12 45 45 H 1.09007 * 109.46922 * 300.00191 * 17 16 13 46 46 H 1.08999 * 109.47288 * 59.99562 * 17 16 13 47 47 H 0.97000 * 120.00280 * 359.97438 * 20 18 17 48 48 H 0.96996 * 119.99529 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 1.1960 5 7 1.6888 -0.4027 2.4035 6 6 2.2933 -1.1925 3.2541 7 6 3.0862 -2.0813 2.5245 8 6 2.8908 -1.7419 1.1970 9 6 3.5043 -2.3816 0.0223 10 8 3.3221 -1.9179 -1.0873 11 7 4.2681 -3.4814 0.1759 12 6 4.7872 -4.1829 -1.0008 13 6 5.6163 -5.3879 -0.5516 14 1 4.9694 -6.1071 -0.0492 15 6 6.2604 -6.0474 -1.7727 16 7 6.6656 -4.9422 0.3747 17 6 7.0821 -6.0352 1.2635 18 6 8.1566 -5.5414 2.1977 19 8 8.5382 -4.3920 2.1294 20 7 8.6942 -6.3770 3.1082 21 6 9.6721 -5.9278 3.9576 22 1 10.0113 -4.9043 3.8975 23 6 10.2260 -6.7893 4.8967 24 7 9.8128 -8.0346 4.9703 25 14 11.5578 -6.1771 6.0546 26 1 11.0286 -5.0527 6.8675 27 1 11.9793 -7.2822 6.9526 28 1 12.7248 -5.7100 5.2640 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9565 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 2.1967 -1.1621 4.3294 37 1 3.7178 -2.8661 2.9135 38 1 4.4741 -3.8084 1.0655 39 1 3.9551 -4.5242 -1.6167 40 1 5.4144 -3.5056 -1.5803 41 1 6.8514 -6.9055 -1.4527 42 1 5.4818 -6.3780 -2.4602 43 1 6.9072 -5.3282 -2.2751 44 1 6.3621 -4.1399 0.9060 45 1 6.2256 -6.3777 1.8442 46 1 7.4701 -6.8608 0.6669 47 1 8.3893 -7.2963 3.1625 48 1 10.1993 -8.6358 5.6261 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731593335.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:03 Heat of formation + Delta-G solvation = 3.914492 kcal Electronic energy + Delta-G solvation = -29001.731415 eV Core-core repulsion = 24900.428698 eV Total energy + Delta-G solvation = -4101.302716 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.75932 -39.78738 -38.44088 -37.06223 -36.00401 -34.23299 -33.81175 -31.58980 -31.20171 -30.60334 -30.49234 -27.66027 -26.92685 -26.22350 -24.07295 -23.52216 -22.95208 -21.13981 -20.78181 -19.85864 -19.30859 -18.22731 -17.88364 -16.50320 -16.43069 -16.26919 -15.88917 -15.51295 -15.34139 -15.05742 -14.67564 -14.52792 -14.44767 -14.16924 -13.91199 -13.52379 -13.31970 -13.23746 -12.89427 -12.69280 -12.59508 -12.56042 -12.48732 -11.94633 -11.83275 -11.73504 -11.71107 -11.56465 -11.45786 -11.08856 -10.96629 -10.91690 -10.46287 -10.24084 -10.17460 -9.53860 -9.52991 -9.28260 -9.17181 -8.52220 -8.18272 -7.99729 -6.44737 -3.85664 1.05070 2.11211 2.45511 2.92819 2.99098 3.18297 3.24463 3.28762 3.85751 3.99018 4.19093 4.23385 4.32585 4.54644 4.57488 4.67412 4.87565 4.92496 4.93350 5.12024 5.17668 5.20377 5.22973 5.24655 5.36238 5.36598 5.42867 5.50996 5.56545 5.62842 5.66064 5.72471 5.77457 5.82121 5.90884 5.92618 6.04732 6.19337 6.29243 6.32945 6.57414 7.07142 7.10079 7.50319 7.52387 7.79515 7.92205 8.02593 8.57488 9.14658 9.50406 10.01604 10.72768 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013153 B = 0.002391 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.248194 B =11709.272761 C =13211.872337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.127 3.873 3 C -0.159 4.159 4 N -0.248 5.248 5 N -0.273 5.273 6 C -0.005 4.005 7 C -0.184 4.184 8 C -0.044 4.044 9 C 0.597 3.403 10 O -0.542 6.542 11 N -0.714 5.714 12 C 0.120 3.880 13 C 0.071 3.929 14 H 0.050 0.950 15 C -0.138 4.138 16 N -0.664 5.664 17 C 0.049 3.951 18 C 0.438 3.562 19 O -0.582 6.582 20 N -0.562 5.562 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.135 0.865 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.187 0.813 37 H 0.161 0.839 38 H 0.404 0.596 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.347 0.653 45 H 0.044 0.956 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.656 7.943 -9.893 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.027 3.973 3 C -0.217 4.217 4 N -0.037 5.037 5 N -0.106 5.106 6 C -0.180 4.180 7 C -0.213 4.213 8 C -0.172 4.172 9 C 0.383 3.617 10 O -0.420 6.420 11 N -0.366 5.366 12 C -0.003 4.003 13 C -0.039 4.039 14 H 0.068 0.932 15 C -0.196 4.196 16 N -0.299 5.299 17 C -0.084 4.084 18 C 0.224 3.776 19 O -0.466 6.466 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.152 0.848 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.204 0.796 37 H 0.179 0.821 38 H 0.240 0.760 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.168 0.832 45 H 0.062 0.938 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.761 9.740 -11.265 23.953 hybrid contribution 0.505 -1.366 1.937 2.423 sum -18.256 8.375 -9.328 22.146 Atomic orbital electron populations 1.22105 0.92809 1.03055 1.03622 1.22096 0.95951 0.94627 0.84625 1.22118 1.02185 0.93920 1.03449 1.45983 1.30195 1.21910 1.05659 1.73124 1.23020 1.24617 0.89832 1.23593 0.98819 0.95531 1.00042 1.22337 1.04418 1.03769 0.90755 1.21332 1.02963 0.97272 0.95642 1.16851 0.78258 0.79961 0.86650 1.90722 1.61873 1.63400 1.25997 1.45707 1.51773 1.28161 1.10953 1.21696 0.97614 0.93753 0.87280 1.21824 0.91601 0.94915 0.95593 0.93165 1.21735 1.00640 1.01088 0.96168 1.60123 1.39693 1.07909 1.22200 1.21766 0.97542 0.94513 0.94539 1.19780 0.86554 0.87134 0.84163 1.90538 1.64729 1.18683 1.72698 1.41853 1.34877 1.12577 1.30544 1.19650 1.13646 0.98449 1.11219 0.87962 1.25264 0.99022 0.95133 0.98460 1.69603 1.43433 1.04684 1.36539 0.85918 0.80647 0.78047 0.79625 1.19883 1.20972 1.19872 0.92084 0.90993 0.90285 0.84770 0.91809 0.90224 0.91274 0.79607 0.82134 0.76041 0.90479 0.89819 0.91858 0.92441 0.91443 0.83162 0.93788 0.89340 0.77461 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.30 37.16 0.35 -0.90 16 2 C 0.13 1.26 3.53 -67.93 -0.24 1.02 16 3 C -0.16 -1.38 9.45 37.16 0.35 -1.02 16 4 N -0.25 -2.97 3.09 -50.69 -0.16 -3.12 16 5 N -0.27 -3.31 11.52 30.59 0.35 -2.95 16 6 C 0.00 -0.05 12.03 -17.43 -0.21 -0.26 16 7 C -0.18 -2.01 10.50 -38.98 -0.41 -2.42 16 8 C -0.04 -0.54 6.96 -82.06 -0.57 -1.11 16 9 C 0.60 7.53 7.79 -12.64 -0.10 7.43 16 10 O -0.54 -7.83 14.41 5.25 0.08 -7.75 16 11 N -0.71 -7.76 4.98 -61.47 -0.31 -8.06 16 12 C 0.12 1.25 5.32 -4.04 -0.02 1.23 16 13 C 0.07 0.77 2.81 -67.71 -0.19 0.58 16 14 H 0.05 0.50 7.80 -51.93 -0.40 0.09 16 15 C -0.14 -1.39 9.41 37.16 0.35 -1.04 16 16 N -0.66 -9.77 5.93 -107.99 -0.64 -10.41 16 17 C 0.05 0.79 5.97 -4.97 -0.03 0.77 16 18 C 0.44 9.91 7.82 -10.99 -0.09 9.83 16 19 O -0.58 -15.35 15.78 5.54 0.09 -15.26 16 20 N -0.56 -13.78 5.29 -10.96 -0.06 -13.84 16 21 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 22 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 23 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 24 N -0.90 -24.04 13.05 55.50 0.72 -23.32 16 25 Si 0.93 20.77 29.55 -169.99 -5.02 15.74 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.13 1.48 5.38 -51.92 -0.28 1.20 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.19 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.16 1.44 7.59 -52.49 -0.40 1.05 16 38 H 0.40 4.01 6.40 -40.82 -0.26 3.75 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.35 5.29 6.41 -39.29 -0.25 5.04 16 45 H 0.04 0.62 8.06 -51.92 -0.42 0.20 16 46 H 0.09 1.34 7.44 -51.93 -0.39 0.95 16 47 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 400.29 15.07 6.03 6.03 Total: -1.00 -33.04 400.29 -7.23 -40.27 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -7.27 Total: 16.40 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -1.05 Total: 6.27 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.08 Total: -61.70 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: 0.16 Total: -23.02 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.04 -7.23 -40.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731593335.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.188 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds