Wall clock time and date at job start Tue Mar 31 2020 20:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46675 * 2 1 4 4 N 1.46491 * 109.47191 * 120.00482 * 2 1 3 5 5 N 1.28437 * 125.19317 * 305.62254 * 4 2 1 6 6 C 1.30868 * 110.92887 * 180.28604 * 5 4 2 7 7 C 1.39677 * 107.86140 * 359.70826 * 6 5 4 8 8 C 1.36609 * 125.18787 * 125.41334 * 4 2 1 9 9 C 1.47157 * 126.88499 * 359.97438 * 8 4 2 10 10 O 1.21632 * 119.99962 * 5.21268 * 9 8 4 11 11 N 1.34777 * 120.00293 * 185.21396 * 9 8 4 12 12 C 1.46494 * 120.00218 * 174.91747 * 11 9 8 13 13 C 1.53005 * 109.47083 * 180.02562 * 12 11 9 14 14 H 1.08999 * 109.47378 * 64.99970 * 13 12 11 15 15 C 1.53000 * 109.47147 * 184.99940 * 13 12 11 16 16 N 1.46894 * 109.46874 * 304.99680 * 13 12 11 17 17 C 1.46900 * 110.99979 * 155.00196 * 16 13 12 18 18 C 1.50704 * 109.47542 * 180.02562 * 17 16 13 19 19 O 1.21294 * 119.99389 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00126 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99632 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00552 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99670 * 179.97438 * 21 20 18 24 24 N 1.31417 * 120.00004 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00085 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47143 * 60.00170 * 25 23 21 27 27 H 1.48495 * 109.47481 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47251 * 300.00545 * 25 23 21 29 29 H 1.09005 * 109.46461 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46674 * 299.99109 * 1 2 3 31 31 H 1.08998 * 109.47069 * 59.99482 * 1 2 3 32 32 H 1.09008 * 109.46676 * 240.00884 * 2 1 3 33 33 H 1.09001 * 109.46937 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47795 * 300.00073 * 3 2 1 35 35 H 1.08998 * 109.46843 * 60.00994 * 3 2 1 36 36 H 1.08001 * 126.07273 * 179.68187 * 6 5 4 37 37 H 1.07994 * 127.32085 * 179.97438 * 7 6 5 38 38 H 0.96999 * 119.99660 * 354.92014 * 11 9 8 39 39 H 1.08997 * 109.47044 * 299.99710 * 12 11 9 40 40 H 1.08995 * 109.47395 * 60.00210 * 12 11 9 41 41 H 1.08991 * 109.47199 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.47367 * 300.00064 * 15 13 12 43 43 H 1.08999 * 109.46957 * 59.99773 * 15 13 12 44 44 H 1.00906 * 111.00366 * 31.04842 * 16 13 12 45 45 H 1.09007 * 109.46922 * 300.00191 * 17 16 13 46 46 H 1.08999 * 109.47288 * 59.99562 * 17 16 13 47 47 H 0.97000 * 120.00280 * 359.97438 * 20 18 17 48 48 H 0.96996 * 119.99529 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 1.1960 5 7 1.6888 -0.4027 2.4035 6 6 2.2933 -1.1925 3.2541 7 6 3.0862 -2.0813 2.5245 8 6 2.8908 -1.7419 1.1970 9 6 3.5043 -2.3816 0.0223 10 8 3.3221 -1.9179 -1.0873 11 7 4.2681 -3.4814 0.1759 12 6 4.7872 -4.1829 -1.0008 13 6 5.6163 -5.3879 -0.5516 14 1 4.9694 -6.1071 -0.0492 15 6 6.2604 -6.0474 -1.7727 16 7 6.6656 -4.9422 0.3747 17 6 7.0821 -6.0352 1.2635 18 6 8.1566 -5.5414 2.1977 19 8 8.5382 -4.3920 2.1294 20 7 8.6942 -6.3770 3.1082 21 6 9.6721 -5.9278 3.9576 22 1 10.0113 -4.9043 3.8975 23 6 10.2260 -6.7893 4.8967 24 7 9.8128 -8.0346 4.9703 25 14 11.5578 -6.1771 6.0546 26 1 11.0286 -5.0527 6.8675 27 1 11.9793 -7.2822 6.9526 28 1 12.7248 -5.7100 5.2640 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9565 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 2.1967 -1.1621 4.3294 37 1 3.7178 -2.8661 2.9135 38 1 4.4741 -3.8084 1.0655 39 1 3.9551 -4.5242 -1.6167 40 1 5.4144 -3.5056 -1.5803 41 1 6.8514 -6.9055 -1.4527 42 1 5.4818 -6.3780 -2.4602 43 1 6.9072 -5.3282 -2.2751 44 1 6.3621 -4.1399 0.9060 45 1 6.2256 -6.3777 1.8442 46 1 7.4701 -6.8608 0.6669 47 1 8.3893 -7.2963 3.1625 48 1 10.1993 -8.6358 5.6261 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731593335.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:02 Heat of formation + Delta-G solvation = -20.864179 kcal Electronic energy + Delta-G solvation = -29002.805898 eV Core-core repulsion = 24900.428698 eV Total energy + Delta-G solvation = -4102.377200 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.61276 -40.77592 -40.10105 -38.22824 -36.77320 -35.95908 -35.06341 -33.26883 -32.50745 -31.54626 -31.32741 -28.32041 -28.15190 -27.47258 -25.72242 -24.38753 -23.79805 -21.99951 -21.72136 -21.13529 -20.64957 -19.89831 -19.06874 -17.79986 -17.43118 -17.21074 -16.94308 -16.78705 -16.50726 -16.30939 -15.83242 -15.80480 -15.59508 -15.39010 -15.01787 -14.94349 -14.28880 -14.11300 -14.01955 -13.73590 -13.60863 -13.46449 -13.26686 -13.20001 -13.15970 -12.92989 -12.80268 -12.56794 -12.44948 -12.40776 -12.35362 -12.11601 -11.86683 -11.85157 -11.48180 -11.11265 -10.47262 -10.31883 -10.13492 -10.03419 -9.99236 -9.35804 -8.44873 -5.93018 0.14451 1.29390 1.40831 1.43306 1.53493 1.60593 2.04761 2.07122 2.08590 2.30301 2.88169 3.22930 3.41210 3.45158 3.51174 3.69825 3.84094 3.93695 4.09912 4.13687 4.18572 4.27237 4.40134 4.48072 4.53249 4.56957 4.58884 4.61613 4.63337 4.69801 4.77120 4.80718 4.84866 4.95731 5.06969 5.08877 5.11854 5.18520 5.42852 5.46327 5.52390 5.75349 5.89574 6.10491 6.19035 6.35499 6.62456 6.87808 7.05203 7.15069 7.59151 8.14611 8.72074 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013153 B = 0.002391 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.248194 B =11709.272761 C =13211.872337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.119 3.881 3 C -0.153 4.153 4 N -0.254 5.254 5 N -0.288 5.288 6 C -0.011 4.011 7 C -0.184 4.184 8 C -0.064 4.064 9 C 0.595 3.405 10 O -0.566 6.566 11 N -0.705 5.705 12 C 0.124 3.876 13 C 0.078 3.922 14 H 0.072 0.928 15 C -0.137 4.137 16 N -0.681 5.681 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.572 5.572 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.989 3.011 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.274 1.274 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.045 0.955 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.213 0.787 37 H 0.178 0.822 38 H 0.409 0.591 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.053 0.947 44 H 0.342 0.658 45 H 0.075 0.925 46 H 0.106 0.894 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.658 7.225 -9.907 23.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.019 3.981 3 C -0.210 4.210 4 N -0.044 5.044 5 N -0.121 5.121 6 C -0.185 4.185 7 C -0.213 4.213 8 C -0.193 4.193 9 C 0.381 3.619 10 O -0.446 6.446 11 N -0.358 5.358 12 C 0.001 3.999 13 C -0.032 4.032 14 H 0.090 0.910 15 C -0.195 4.195 16 N -0.316 5.316 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.209 5.209 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.813 3.187 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.200 1.200 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.140 0.860 33 H 0.064 0.936 34 H 0.123 0.877 35 H 0.085 0.915 36 H 0.229 0.771 37 H 0.195 0.805 38 H 0.246 0.754 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.073 0.927 44 H 0.163 0.837 45 H 0.092 0.908 46 H 0.124 0.876 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.776 8.987 -11.288 24.480 hybrid contribution 0.793 -1.120 1.889 2.335 sum -18.983 7.867 -9.398 22.596 Atomic orbital electron populations 1.22065 0.91200 1.02858 1.04629 1.22255 0.97249 0.94855 0.83721 1.22090 1.00963 0.93441 1.04551 1.46224 1.30168 1.21953 1.06031 1.73105 1.23622 1.25227 0.90140 1.24114 0.98247 0.94971 1.01218 1.22624 1.04313 1.04035 0.90292 1.21490 1.03739 0.97985 0.96063 1.16965 0.78286 0.80155 0.86467 1.90706 1.62899 1.64151 1.26828 1.45666 1.51021 1.27627 1.11439 1.21692 0.97832 0.93242 0.87115 1.21884 0.90885 0.95315 0.95097 0.91025 1.21749 1.01200 1.00442 0.96146 1.60119 1.41830 1.07486 1.22204 1.21626 0.96266 0.95008 0.93916 1.20908 0.86682 0.86255 0.83716 1.90510 1.66199 1.20610 1.73706 1.41915 1.34961 1.13051 1.31011 1.19593 1.15574 0.97882 1.13139 0.90442 1.25986 1.00602 0.95237 0.99328 1.69657 1.44101 1.05223 1.37003 0.85038 0.77963 0.77887 0.77775 1.19661 1.19561 1.19956 0.92836 0.91342 0.87843 0.85969 0.93591 0.87738 0.91503 0.77061 0.80494 0.75409 0.88802 0.91365 0.92230 0.89835 0.92739 0.83739 0.90761 0.87649 0.76908 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.30 71.98 0.67 -1.58 16 2 C 0.12 2.34 3.53 45.00 0.16 2.50 16 3 C -0.15 -2.60 9.45 71.98 0.68 -1.92 16 4 N -0.25 -6.06 3.09 -314.28 -0.97 -7.03 16 5 N -0.29 -6.84 11.52 -57.13 -0.66 -7.50 16 6 C -0.01 -0.22 12.03 85.18 1.02 0.80 16 7 C -0.18 -3.87 10.50 22.66 0.24 -3.63 16 8 C -0.06 -1.57 6.96 40.78 0.28 -1.29 16 9 C 0.59 14.88 7.79 86.59 0.67 15.56 16 10 O -0.57 -16.45 14.41 -4.13 -0.06 -16.51 16 11 N -0.71 -14.64 4.98 -466.65 -2.32 -16.96 16 12 C 0.12 2.41 5.32 86.38 0.46 2.87 16 13 C 0.08 1.49 2.81 44.92 0.13 1.62 16 14 H 0.07 1.14 7.80 -2.39 -0.02 1.12 16 15 C -0.14 -2.44 9.41 71.98 0.68 -1.76 16 16 N -0.68 -19.04 5.93 -495.57 -2.94 -21.98 16 17 C 0.06 1.96 5.97 85.56 0.51 2.47 16 18 C 0.44 19.70 7.82 87.66 0.69 20.38 16 19 O -0.62 -33.43 15.78 -3.07 -0.05 -33.48 16 20 N -0.57 -28.18 5.29 -306.98 -1.62 -29.80 16 21 C -0.33 -18.43 9.68 84.04 0.81 -17.61 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 24 N -0.92 -48.47 13.05 21.66 0.28 -48.18 16 25 Si 0.99 42.29 29.55 68.60 2.03 44.32 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 29 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 31 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.12 2.73 5.38 -2.38 -0.01 2.72 16 33 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.21 2.97 8.06 -2.91 -0.02 2.94 16 37 H 0.18 2.96 7.59 -2.91 -0.02 2.94 16 38 H 0.41 7.59 6.40 -92.71 -0.59 7.00 16 39 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.06 1.11 7.45 -2.39 -0.02 1.10 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.34 10.12 6.41 -89.69 -0.58 9.55 16 45 H 0.07 1.86 8.06 -2.38 -0.02 1.84 16 46 H 0.11 2.92 7.44 -2.39 -0.02 2.90 16 47 H 0.40 18.45 7.90 -92.71 -0.73 17.72 16 48 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -72.30 400.29 0.26 -72.04 By element: Atomic # 1 Polarization: 47.70 SS G_CDS: -0.90 Total: 46.80 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 7.47 Total: 18.28 kcal Atomic # 7 Polarization: -123.22 SS G_CDS: -8.23 Total: -131.45 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: -0.11 Total: -49.99 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -72.30 0.26 -72.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731593335.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.171 kcal (2) G-P(sol) polarization free energy of solvation -72.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds