Wall clock time and date at job start Tue Mar 31 2020 20:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46943 * 2 1 4 4 N 1.46504 * 109.46809 * 119.99786 * 2 1 3 5 5 N 1.28435 * 125.19187 * 294.88026 * 4 2 1 6 6 C 1.30867 * 110.92810 * 180.02562 * 5 4 2 7 7 C 1.39670 * 107.85874 * 0.02562 * 6 5 4 8 8 C 1.36602 * 125.18833 * 115.15564 * 4 2 1 9 9 C 1.47162 * 126.88422 * 0.02562 * 8 4 2 10 10 O 1.21627 * 120.00314 * 5.47742 * 9 8 4 11 11 N 1.34777 * 119.99989 * 185.47681 * 9 8 4 12 12 C 1.46498 * 119.99832 * 185.08994 * 11 9 8 13 13 C 1.53002 * 109.46843 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.47306 * 294.99898 * 13 12 11 15 15 C 1.52999 * 109.47153 * 175.00251 * 13 12 11 16 16 N 1.46899 * 109.47193 * 55.00241 * 13 12 11 17 17 C 1.46896 * 110.99867 * 204.99892 * 16 13 12 18 18 C 1.50700 * 109.47102 * 180.02562 * 17 16 13 19 19 O 1.21296 * 119.99986 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00430 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00111 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00287 * 359.97438 * 21 20 18 23 23 C 1.38956 * 119.99895 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99741 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99947 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47106 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47055 * 120.00038 * 25 23 21 28 28 H 1.48506 * 109.46874 * 239.99563 * 25 23 21 29 29 H 1.08999 * 109.47371 * 300.00089 * 1 2 3 30 30 H 1.09000 * 109.47099 * 59.99876 * 1 2 3 31 31 H 1.09003 * 109.47251 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47371 * 239.99911 * 2 1 3 33 33 H 1.09000 * 109.47324 * 299.99986 * 3 2 1 34 34 H 1.08999 * 109.47160 * 59.99782 * 3 2 1 35 35 H 1.09003 * 109.47303 * 179.97438 * 3 2 1 36 36 H 1.08003 * 126.06845 * 179.97438 * 6 5 4 37 37 H 1.08002 * 127.31603 * 179.97438 * 7 6 5 38 38 H 0.96998 * 120.00178 * 5.09880 * 11 9 8 39 39 H 1.09004 * 109.47770 * 300.00229 * 12 11 9 40 40 H 1.09005 * 109.47156 * 60.00822 * 12 11 9 41 41 H 1.08996 * 109.47485 * 179.97438 * 15 13 12 42 42 H 1.08998 * 109.47368 * 300.00178 * 15 13 12 43 43 H 1.09009 * 109.47326 * 59.99803 * 15 13 12 44 44 H 1.00896 * 110.99891 * 328.95434 * 16 13 12 45 45 H 1.09004 * 109.47464 * 299.99603 * 17 16 13 46 46 H 1.08993 * 109.47339 * 60.00032 * 17 16 13 47 47 H 0.97001 * 119.99637 * 359.97438 * 20 18 17 48 48 H 0.97000 * 119.99805 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.8486 -0.2885 2.4042 6 6 2.3997 -1.1168 3.2544 7 6 2.9827 -2.1550 2.5243 8 6 2.7281 -1.8577 1.1968 9 6 3.1387 -2.6424 0.0215 10 8 2.9326 -2.2139 -1.0980 11 7 3.7432 -3.8358 0.1856 12 6 4.2520 -4.5653 -0.9785 13 6 4.8863 -5.8797 -0.5192 14 1 5.7626 -5.6659 0.0928 15 6 5.3056 -6.6983 -1.7419 16 7 3.9118 -6.6439 0.2710 17 6 4.5888 -7.5622 1.1963 18 6 3.5594 -8.3274 1.9874 19 8 2.3780 -8.1272 1.7991 20 7 3.9514 -9.2336 2.9048 21 6 3.0149 -9.9302 3.6240 22 1 1.9630 -9.7525 3.4558 23 6 3.4191 -10.8641 4.5702 24 7 4.6990 -11.0799 4.7753 25 14 2.1430 -11.8136 5.5497 26 1 0.7825 -11.3892 5.1327 27 1 2.3074 -13.2679 5.2980 28 1 2.3250 -11.5383 6.9977 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4426 0.0005 36 1 2.4038 -1.0151 4.3296 37 1 3.5208 -3.0069 2.9130 38 1 3.8412 -4.2116 1.0744 39 1 3.4298 -4.7783 -1.6618 40 1 5.0006 -3.9590 -1.4886 41 1 5.7579 -7.6344 -1.4148 42 1 4.4294 -6.9121 -2.3539 43 1 6.0287 -6.1312 -2.3283 44 1 3.2854 -6.0276 0.7667 45 1 5.2041 -8.2611 0.6296 46 1 5.2203 -6.9917 1.8773 47 1 4.8962 -9.3935 3.0556 48 1 4.9812 -11.7316 5.4361 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731593336.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:06 Heat of formation + Delta-G solvation = 3.823080 kcal Electronic energy + Delta-G solvation = -29013.880886 eV Core-core repulsion = 24912.574206 eV Total energy + Delta-G solvation = -4101.306680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.76053 -39.78983 -38.44346 -37.06407 -35.99797 -34.23487 -33.81383 -31.59083 -31.20250 -30.60264 -30.49448 -27.65100 -26.92834 -26.22580 -24.07596 -23.52151 -22.94871 -21.14555 -20.78423 -19.85970 -19.31168 -18.22040 -17.88505 -16.51239 -16.40313 -16.30410 -15.87862 -15.51389 -15.33315 -15.06601 -14.68218 -14.52391 -14.44668 -14.17080 -13.90419 -13.53295 -13.30828 -13.24789 -12.89603 -12.69068 -12.59047 -12.55820 -12.48652 -11.94701 -11.83971 -11.72711 -11.71683 -11.55210 -11.45833 -11.12437 -10.96925 -10.92569 -10.36484 -10.25384 -10.16802 -9.55360 -9.53660 -9.28531 -9.17573 -8.52366 -8.18458 -7.99893 -6.45132 -3.85885 1.04975 2.11263 2.45528 2.92574 2.99430 3.14266 3.25394 3.32570 3.85569 3.98822 4.19632 4.23487 4.32331 4.55540 4.57405 4.67650 4.88424 4.92387 4.93111 5.11843 5.18682 5.20240 5.22897 5.25334 5.36067 5.37145 5.43030 5.51515 5.55197 5.62708 5.66009 5.72359 5.78204 5.82962 5.90684 5.92518 6.04684 6.19205 6.29038 6.32689 6.57535 7.07000 7.09976 7.50238 7.52583 7.79472 7.92219 8.02873 8.57243 9.14697 9.50314 10.01407 10.72546 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.002417 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.020106 B =11582.728197 C =13063.472579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 C -0.157 4.157 4 N -0.248 5.248 5 N -0.273 5.273 6 C -0.005 4.005 7 C -0.184 4.184 8 C -0.043 4.043 9 C 0.597 3.403 10 O -0.542 6.542 11 N -0.713 5.713 12 C 0.120 3.880 13 C 0.071 3.929 14 H 0.051 0.949 15 C -0.138 4.138 16 N -0.664 5.664 17 C 0.049 3.951 18 C 0.439 3.561 19 O -0.582 6.582 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.136 0.864 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.187 0.813 37 H 0.160 0.840 38 H 0.404 0.596 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.347 0.653 45 H 0.088 0.912 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.107 20.439 -8.752 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.026 3.974 3 C -0.215 4.215 4 N -0.037 5.037 5 N -0.106 5.106 6 C -0.180 4.180 7 C -0.213 4.213 8 C -0.172 4.172 9 C 0.383 3.617 10 O -0.420 6.420 11 N -0.366 5.366 12 C -0.004 4.004 13 C -0.039 4.039 14 H 0.068 0.932 15 C -0.196 4.196 16 N -0.299 5.299 17 C -0.084 4.084 18 C 0.224 3.776 19 O -0.466 6.466 20 N -0.199 5.199 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.207 1.207 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.154 0.846 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.204 0.796 37 H 0.178 0.822 38 H 0.240 0.760 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.168 0.832 45 H 0.107 0.893 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.513 21.339 -10.246 23.677 hybrid contribution 0.943 -1.106 1.996 2.469 sum 1.457 20.233 -8.250 21.899 Atomic orbital electron populations 1.22135 0.92837 1.03310 1.03515 1.22124 0.96051 0.94579 0.84661 1.22089 1.01843 0.93979 1.03576 1.45991 1.36576 1.15493 1.05636 1.73124 1.21627 1.25983 0.89839 1.23586 1.01129 0.93246 1.00039 1.22312 1.05951 1.02339 0.90727 1.21329 1.06775 0.93469 0.95608 1.16851 0.77293 0.80807 0.86754 1.90714 1.55841 1.70276 1.25169 1.45710 1.59543 1.19762 1.11566 1.21700 0.99539 0.91351 0.87765 1.21825 0.94084 0.91436 0.96589 0.93158 1.21736 1.01515 0.99866 0.96513 1.60121 1.18625 1.22337 1.28852 1.21763 0.95980 0.96309 0.94308 1.19785 0.89510 0.84470 0.83828 1.90540 1.17856 1.68923 1.69297 1.41869 1.09706 1.34727 1.33624 1.19748 0.90872 1.16771 1.15423 0.87860 1.25267 0.96862 0.97851 0.97961 1.69617 1.14171 1.35371 1.35087 0.85806 0.80568 0.79010 0.79010 1.19201 1.20727 1.20744 0.91228 0.90195 0.91833 0.84644 0.90283 0.91051 0.92053 0.79623 0.82199 0.76029 0.89831 0.90452 0.91861 0.91444 0.92441 0.83153 0.89339 0.93772 0.77470 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.45 37.16 0.35 -1.05 16 2 C 0.13 1.27 3.56 -67.93 -0.24 1.02 16 3 C -0.16 -1.27 9.30 37.16 0.35 -0.92 16 4 N -0.25 -2.98 3.09 -50.69 -0.16 -3.13 16 5 N -0.27 -3.31 11.52 30.59 0.35 -2.96 16 6 C 0.00 -0.05 12.03 -17.43 -0.21 -0.26 16 7 C -0.18 -1.99 10.50 -38.99 -0.41 -2.40 16 8 C -0.04 -0.53 6.96 -82.06 -0.57 -1.10 16 9 C 0.60 7.52 7.79 -12.64 -0.10 7.42 16 10 O -0.54 -7.82 14.40 5.25 0.08 -7.75 16 11 N -0.71 -7.74 4.97 -61.46 -0.31 -8.05 16 12 C 0.12 1.25 5.32 -4.04 -0.02 1.23 16 13 C 0.07 0.77 2.81 -67.71 -0.19 0.58 16 14 H 0.05 0.49 7.80 -51.93 -0.40 0.09 16 15 C -0.14 -1.38 9.41 37.16 0.35 -1.03 16 16 N -0.66 -9.77 5.93 -107.99 -0.64 -10.41 16 17 C 0.05 0.80 5.96 -4.98 -0.03 0.77 16 18 C 0.44 9.93 7.82 -10.99 -0.09 9.85 16 19 O -0.58 -15.38 15.78 5.54 0.09 -15.30 16 20 N -0.56 -13.81 5.29 -10.96 -0.06 -13.86 16 21 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.06 13.05 55.50 0.72 -23.33 16 25 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.14 1.51 5.32 -51.93 -0.28 1.24 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.19 1.44 8.06 -52.48 -0.42 1.02 16 37 H 0.16 1.38 7.62 -52.49 -0.40 0.98 16 38 H 0.40 4.01 6.45 -40.82 -0.26 3.74 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 44 H 0.35 5.31 6.41 -39.29 -0.25 5.06 16 45 H 0.09 1.34 7.44 -51.93 -0.39 0.95 16 46 H 0.04 0.62 8.05 -51.93 -0.42 0.21 16 47 H 0.39 9.17 7.90 -40.82 -0.32 8.84 16 48 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 400.33 15.07 6.03 6.03 Total: -1.00 -33.16 400.33 -7.23 -40.39 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -7.27 Total: 16.35 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -1.05 Total: 6.28 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.08 Total: -61.75 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: 0.16 Total: -23.04 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.16 -7.23 -40.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731593336.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.213 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds