Wall clock time and date at job start Tue Mar 31 2020 20:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46943 * 2 1 4 4 N 1.46504 * 109.46809 * 119.99786 * 2 1 3 5 5 N 1.28435 * 125.19187 * 294.88026 * 4 2 1 6 6 C 1.30867 * 110.92810 * 180.02562 * 5 4 2 7 7 C 1.39670 * 107.85874 * 0.02562 * 6 5 4 8 8 C 1.36602 * 125.18833 * 115.15564 * 4 2 1 9 9 C 1.47162 * 126.88422 * 0.02562 * 8 4 2 10 10 O 1.21627 * 120.00314 * 5.47742 * 9 8 4 11 11 N 1.34777 * 119.99989 * 185.47681 * 9 8 4 12 12 C 1.46498 * 119.99832 * 185.08994 * 11 9 8 13 13 C 1.53002 * 109.46843 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.47306 * 294.99898 * 13 12 11 15 15 C 1.52999 * 109.47153 * 175.00251 * 13 12 11 16 16 N 1.46899 * 109.47193 * 55.00241 * 13 12 11 17 17 C 1.46896 * 110.99867 * 204.99892 * 16 13 12 18 18 C 1.50700 * 109.47102 * 180.02562 * 17 16 13 19 19 O 1.21296 * 119.99986 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00430 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00111 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00287 * 359.97438 * 21 20 18 23 23 C 1.38956 * 119.99895 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99741 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99947 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47106 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47055 * 120.00038 * 25 23 21 28 28 H 1.48506 * 109.46874 * 239.99563 * 25 23 21 29 29 H 1.08999 * 109.47371 * 300.00089 * 1 2 3 30 30 H 1.09000 * 109.47099 * 59.99876 * 1 2 3 31 31 H 1.09003 * 109.47251 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47371 * 239.99911 * 2 1 3 33 33 H 1.09000 * 109.47324 * 299.99986 * 3 2 1 34 34 H 1.08999 * 109.47160 * 59.99782 * 3 2 1 35 35 H 1.09003 * 109.47303 * 179.97438 * 3 2 1 36 36 H 1.08003 * 126.06845 * 179.97438 * 6 5 4 37 37 H 1.08002 * 127.31603 * 179.97438 * 7 6 5 38 38 H 0.96998 * 120.00178 * 5.09880 * 11 9 8 39 39 H 1.09004 * 109.47770 * 300.00229 * 12 11 9 40 40 H 1.09005 * 109.47156 * 60.00822 * 12 11 9 41 41 H 1.08996 * 109.47485 * 179.97438 * 15 13 12 42 42 H 1.08998 * 109.47368 * 300.00178 * 15 13 12 43 43 H 1.09009 * 109.47326 * 59.99803 * 15 13 12 44 44 H 1.00896 * 110.99891 * 328.95434 * 16 13 12 45 45 H 1.09004 * 109.47464 * 299.99603 * 17 16 13 46 46 H 1.08993 * 109.47339 * 60.00032 * 17 16 13 47 47 H 0.97001 * 119.99637 * 359.97438 * 20 18 17 48 48 H 0.97000 * 119.99805 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.8486 -0.2885 2.4042 6 6 2.3997 -1.1168 3.2544 7 6 2.9827 -2.1550 2.5243 8 6 2.7281 -1.8577 1.1968 9 6 3.1387 -2.6424 0.0215 10 8 2.9326 -2.2139 -1.0980 11 7 3.7432 -3.8358 0.1856 12 6 4.2520 -4.5653 -0.9785 13 6 4.8863 -5.8797 -0.5192 14 1 5.7626 -5.6659 0.0928 15 6 5.3056 -6.6983 -1.7419 16 7 3.9118 -6.6439 0.2710 17 6 4.5888 -7.5622 1.1963 18 6 3.5594 -8.3274 1.9874 19 8 2.3780 -8.1272 1.7991 20 7 3.9514 -9.2336 2.9048 21 6 3.0149 -9.9302 3.6240 22 1 1.9630 -9.7525 3.4558 23 6 3.4191 -10.8641 4.5702 24 7 4.6990 -11.0799 4.7753 25 14 2.1430 -11.8136 5.5497 26 1 0.7825 -11.3892 5.1327 27 1 2.3074 -13.2679 5.2980 28 1 2.3250 -11.5383 6.9977 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4426 0.0005 36 1 2.4038 -1.0151 4.3296 37 1 3.5208 -3.0069 2.9130 38 1 3.8412 -4.2116 1.0744 39 1 3.4298 -4.7783 -1.6618 40 1 5.0006 -3.9590 -1.4886 41 1 5.7579 -7.6344 -1.4148 42 1 4.4294 -6.9121 -2.3539 43 1 6.0287 -6.1312 -2.3283 44 1 3.2854 -6.0276 0.7667 45 1 5.2041 -8.2611 0.6296 46 1 5.2203 -6.9917 1.8773 47 1 4.8962 -9.3935 3.0556 48 1 4.9812 -11.7316 5.4361 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731593336.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:05 Heat of formation + Delta-G solvation = -21.095232 kcal Electronic energy + Delta-G solvation = -29014.961425 eV Core-core repulsion = 24912.574206 eV Total energy + Delta-G solvation = -4102.387219 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.61036 -40.77604 -40.10486 -38.22879 -36.77324 -35.96397 -35.06414 -33.27271 -32.50567 -31.54533 -31.32648 -28.32362 -28.15479 -27.47312 -25.72646 -24.38686 -23.79250 -22.00241 -21.72206 -21.13805 -20.65279 -19.90313 -19.06207 -17.79929 -17.43855 -17.22237 -16.93441 -16.78222 -16.51456 -16.30544 -15.86794 -15.77089 -15.59598 -15.39009 -15.02218 -14.94167 -14.29352 -14.11616 -14.02514 -13.73581 -13.60950 -13.47946 -13.26780 -13.20538 -13.16063 -12.93648 -12.81045 -12.57033 -12.45292 -12.38254 -12.34684 -12.11167 -11.86802 -11.84920 -11.49778 -11.10470 -10.46984 -10.32308 -10.13642 -10.03119 -9.99374 -9.35816 -8.45581 -5.93515 0.14870 1.29383 1.37222 1.43127 1.56588 1.61298 2.04698 2.07442 2.08630 2.29938 2.88050 3.22329 3.41351 3.45410 3.50919 3.69892 3.83860 3.93829 4.10172 4.13990 4.18577 4.27188 4.40151 4.48065 4.53104 4.56773 4.58578 4.61668 4.63334 4.69462 4.76961 4.80841 4.84851 4.95774 5.07079 5.08730 5.11451 5.18761 5.42956 5.46385 5.52953 5.75530 5.89527 6.10506 6.19183 6.35268 6.62043 6.88037 7.05660 7.14949 7.58810 8.14327 8.71859 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.002417 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.020106 B =11582.728197 C =13063.472579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.118 3.882 3 C -0.149 4.149 4 N -0.255 5.255 5 N -0.289 5.289 6 C -0.011 4.011 7 C -0.182 4.182 8 C -0.065 4.065 9 C 0.595 3.405 10 O -0.566 6.566 11 N -0.705 5.705 12 C 0.124 3.876 13 C 0.078 3.922 14 H 0.072 0.928 15 C -0.137 4.137 16 N -0.681 5.681 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.572 5.572 21 C -0.330 4.330 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.989 3.011 26 H -0.275 1.275 27 H -0.272 1.272 28 H -0.270 1.270 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.045 0.955 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.213 0.787 37 H 0.180 0.820 38 H 0.409 0.591 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.342 0.658 45 H 0.106 0.894 46 H 0.075 0.925 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 20.913 -8.557 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.018 3.982 3 C -0.206 4.206 4 N -0.044 5.044 5 N -0.122 5.122 6 C -0.186 4.186 7 C -0.212 4.212 8 C -0.194 4.194 9 C 0.381 3.619 10 O -0.446 6.446 11 N -0.357 5.357 12 C 0.001 3.999 13 C -0.032 4.032 14 H 0.090 0.910 15 C -0.195 4.195 16 N -0.317 5.317 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.460 4.460 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.813 3.187 26 H -0.200 1.200 27 H -0.198 1.198 28 H -0.195 1.195 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.064 0.936 32 H 0.141 0.859 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.230 0.770 37 H 0.197 0.803 38 H 0.246 0.754 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.162 0.838 45 H 0.124 0.876 46 H 0.093 0.907 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.690 21.806 -10.054 24.072 hybrid contribution 0.590 -1.224 1.891 2.328 sum 2.280 20.582 -8.163 22.259 Atomic orbital electron populations 1.22106 0.91996 1.02460 1.04593 1.22268 0.96757 0.95371 0.83790 1.22048 1.01221 0.92792 1.04588 1.46222 1.36625 1.15591 1.05992 1.73103 1.22238 1.26693 0.90152 1.24124 1.00429 0.92808 1.01230 1.22633 1.05541 1.02817 0.90163 1.21502 1.07748 0.94024 0.96095 1.16969 0.77175 0.81144 0.86575 1.90698 1.56952 1.70959 1.26009 1.45666 1.58883 1.19152 1.12028 1.21695 0.99370 0.91415 0.87410 1.21885 0.93772 0.90980 0.96537 0.90967 1.21751 1.01592 0.99990 0.96210 1.60116 1.19873 1.23029 1.28643 1.21624 0.94103 0.96578 0.94501 1.20921 0.90266 0.83468 0.82887 1.90512 1.20339 1.69928 1.70283 1.41926 1.09462 1.35354 1.34240 1.19655 0.90417 1.18651 1.17283 0.90509 1.25984 0.98785 0.98107 0.98307 1.69667 1.15197 1.35694 1.35441 0.84920 0.77844 0.77919 0.77967 1.19969 1.19757 1.19549 0.91475 0.87736 0.93571 0.85906 0.87874 0.91355 0.92894 0.77023 0.80259 0.75395 0.91391 0.88789 0.92224 0.92752 0.89837 0.83763 0.87630 0.90705 0.76897 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.45 71.98 0.68 -1.98 16 2 C 0.12 2.37 3.56 44.99 0.16 2.53 16 3 C -0.15 -2.30 9.30 71.98 0.67 -1.63 16 4 N -0.25 -6.12 3.09 -314.28 -0.97 -7.09 16 5 N -0.29 -6.90 11.52 -57.14 -0.66 -7.56 16 6 C -0.01 -0.23 12.03 85.18 1.02 0.80 16 7 C -0.18 -3.77 10.50 22.65 0.24 -3.53 16 8 C -0.07 -1.59 6.96 40.78 0.28 -1.31 16 9 C 0.59 14.87 7.79 86.59 0.67 15.55 16 10 O -0.57 -16.48 14.40 -4.12 -0.06 -16.54 16 11 N -0.71 -14.59 4.97 -466.62 -2.32 -16.91 16 12 C 0.12 2.41 5.32 86.38 0.46 2.86 16 13 C 0.08 1.49 2.81 44.92 0.13 1.62 16 14 H 0.07 1.14 7.80 -2.38 -0.02 1.12 16 15 C -0.14 -2.43 9.41 71.98 0.68 -1.75 16 16 N -0.68 -19.06 5.93 -495.58 -2.94 -22.00 16 17 C 0.06 1.96 5.96 85.56 0.51 2.47 16 18 C 0.44 19.74 7.82 87.66 0.69 20.42 16 19 O -0.62 -33.58 15.78 -3.08 -0.05 -33.63 16 20 N -0.57 -28.22 5.29 -306.98 -1.62 -29.84 16 21 C -0.33 -18.36 9.68 84.04 0.81 -17.55 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 24 N -0.92 -48.45 13.05 21.67 0.28 -48.17 16 25 Si 0.99 42.37 29.55 68.60 2.03 44.39 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 28 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 30 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.12 2.81 5.32 -2.39 -0.01 2.80 16 33 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.21 2.91 8.06 -2.91 -0.02 2.89 16 37 H 0.18 2.80 7.62 -2.91 -0.02 2.78 16 38 H 0.41 7.56 6.45 -92.71 -0.60 6.96 16 39 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.06 1.11 7.45 -2.39 -0.02 1.09 16 42 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.34 10.16 6.41 -89.70 -0.58 9.59 16 45 H 0.11 2.92 7.44 -2.38 -0.02 2.90 16 46 H 0.08 1.87 8.05 -2.39 -0.02 1.85 16 47 H 0.40 18.45 7.90 -92.71 -0.73 17.72 16 48 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -72.72 400.33 0.26 -72.46 By element: Atomic # 1 Polarization: 47.45 SS G_CDS: -0.90 Total: 46.55 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 7.47 Total: 18.33 kcal Atomic # 7 Polarization: -123.34 SS G_CDS: -8.22 Total: -131.57 kcal Atomic # 8 Polarization: -50.05 SS G_CDS: -0.11 Total: -50.16 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -72.72 0.26 -72.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731593336.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.363 kcal (2) G-P(sol) polarization free energy of solvation -72.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds