Wall clock time and date at job start Tue Mar 31 2020 19:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46719 * 2 1 4 4 C 1.52999 * 109.47001 * 240.00131 * 2 1 3 5 5 N 1.46501 * 109.46652 * 184.99911 * 4 2 1 6 6 C 1.34783 * 119.99868 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99762 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00114 * 179.97438 * 6 5 4 9 9 C 1.52999 * 109.46898 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47476 * 55.00261 * 9 8 6 11 11 C 1.53003 * 109.47384 * 294.99876 * 9 8 6 12 12 N 1.46504 * 109.47011 * 175.00072 * 9 8 6 13 13 C 1.36876 * 126.40093 * 240.31898 * 12 9 8 14 14 C 1.34665 * 106.82156 * 180.12098 * 13 12 9 15 15 N 1.34127 * 108.01668 * 359.58498 * 14 13 12 16 16 C 1.30500 * 109.25894 * 0.26753 * 15 14 13 17 17 N 1.46903 * 109.47031 * 120.00092 * 2 1 3 18 18 C 1.46905 * 110.99473 * 274.99990 * 17 2 1 19 19 C 1.50705 * 109.46389 * 179.97438 * 18 17 2 20 20 O 1.21292 * 120.00134 * 0.02562 * 19 18 17 21 21 N 1.34781 * 119.99402 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99390 * 180.02562 * 21 19 18 23 23 H 1.07996 * 120.00371 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99791 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99734 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00095 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46874 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47106 * 120.00091 * 26 24 22 29 29 H 1.48493 * 109.47177 * 239.99871 * 26 24 22 30 30 H 1.08999 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47360 * 300.00182 * 1 2 3 32 32 H 1.09001 * 109.46947 * 60.00121 * 1 2 3 33 33 H 1.08995 * 109.47121 * 64.99974 * 4 2 1 34 34 H 1.08998 * 109.46847 * 304.99643 * 4 2 1 35 35 H 0.96992 * 120.00302 * 0.02562 * 5 4 2 36 36 H 1.08998 * 109.46607 * 60.00470 * 8 6 5 37 37 H 1.08993 * 109.46908 * 300.00211 * 8 6 5 38 38 H 1.09003 * 109.46590 * 59.99911 * 11 9 8 39 39 H 1.08987 * 109.47559 * 180.02562 * 11 9 8 40 40 H 1.09001 * 109.47128 * 300.00597 * 11 9 8 41 41 H 1.08002 * 126.59064 * 0.02562 * 13 12 9 42 42 H 1.08002 * 125.99463 * 179.85418 * 14 13 12 43 43 H 1.07994 * 125.64966 * 180.02562 * 16 15 14 44 44 H 1.00892 * 110.99836 * 151.04690 * 17 2 1 45 45 H 1.08995 * 109.47330 * 299.99840 * 18 17 2 46 46 H 1.08994 * 109.47153 * 60.00832 * 18 17 2 47 47 H 0.96991 * 120.00364 * 0.02562 * 21 19 18 48 48 H 0.97002 * 119.99717 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1905 6 6 4.1731 -1.4291 -2.1907 7 8 3.5700 -1.8841 -3.1395 8 6 5.6750 -1.5367 -2.1306 9 6 6.1850 -2.2580 -3.3798 10 1 5.8213 -1.7445 -4.2698 11 6 5.6755 -3.7007 -3.3794 12 7 7.6500 -2.2575 -3.3801 13 6 8.4619 -1.7013 -4.3314 14 6 9.7309 -1.9310 -3.9434 15 7 9.6948 -2.6010 -2.7820 16 6 8.4517 -2.8002 -2.4385 17 7 2.0197 -0.6925 1.1995 18 6 2.0824 0.2227 2.3469 19 6 2.5873 -0.5218 3.5560 20 8 2.8677 -1.6988 3.4702 21 7 2.7282 0.1205 4.7325 22 6 3.1880 -0.5566 5.8324 23 1 3.4376 -1.6046 5.7560 24 6 3.3327 0.1054 7.0454 25 7 3.0294 1.3807 7.1382 26 14 3.9585 -0.8174 8.5442 27 1 4.2261 -2.2316 8.1787 28 1 5.2121 -0.1847 9.0273 29 1 2.9342 -0.7695 9.6183 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.7517 -0.1583 -2.1369 34 1 1.6054 -1.7198 -1.2951 35 1 3.9824 -0.4628 -0.4316 36 1 5.9637 -2.0990 -1.2426 37 1 6.1093 -0.5380 -2.0854 38 1 4.5855 -3.7010 -3.3792 39 1 6.0391 -4.2147 -4.2690 40 1 6.0392 -4.2142 -2.4894 41 1 8.1456 -1.1799 -5.2227 42 1 10.6215 -1.6251 -4.4722 43 1 8.1191 -3.3135 -1.5484 44 1 2.9173 -1.1205 1.0287 45 1 2.7588 1.0462 2.1182 46 1 1.0871 0.6163 2.5525 47 1 2.5043 1.0618 4.8010 48 1 3.1308 1.8429 7.9850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731623769.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:04 Heat of formation + Delta-G solvation = -10.485659 kcal Electronic energy + Delta-G solvation = -28499.545101 eV Core-core repulsion = 24397.617947 eV Total energy + Delta-G solvation = -4101.927154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.35331 -40.29291 -38.56507 -37.26399 -35.90765 -34.28748 -33.85285 -31.55659 -31.28738 -30.87574 -29.51324 -28.69517 -26.74542 -25.93626 -24.07160 -23.56491 -21.62230 -21.10653 -20.80666 -20.21209 -19.38130 -18.05945 -17.93046 -17.18750 -16.43635 -16.26437 -16.03097 -15.54982 -15.40196 -15.09808 -14.91075 -14.53697 -14.20355 -14.08419 -13.95002 -13.83702 -13.56611 -13.49408 -13.26488 -12.92195 -12.80877 -12.63118 -12.18898 -11.99441 -11.96616 -11.82039 -11.73169 -11.68966 -11.49487 -11.15389 -10.97400 -10.39093 -10.28712 -10.27066 -10.16350 -9.89224 -9.58846 -9.41707 -8.75415 -8.57358 -8.23709 -8.03747 -6.48498 -3.89566 1.80610 2.21613 2.32122 2.92885 2.97993 3.11931 3.23384 3.30218 3.81141 3.94510 3.98793 4.19962 4.23852 4.36452 4.50435 4.52952 4.62246 4.72036 4.86992 4.96284 5.04143 5.07311 5.16379 5.18570 5.19149 5.32734 5.39105 5.42690 5.49169 5.57755 5.61382 5.67665 5.79922 5.86153 5.87886 6.01519 6.06381 6.15102 6.25146 6.50277 6.93018 7.02473 7.05893 7.45112 7.49214 7.79808 7.86443 7.99031 8.53146 9.10952 9.46300 9.96972 10.69090 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009756 B = 0.002310 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.354098 B =12119.593713 C =14383.079105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.049 0.951 4 C 0.118 3.882 5 N -0.727 5.727 6 C 0.524 3.476 7 O -0.538 6.538 8 C -0.157 4.157 9 C 0.151 3.849 10 H 0.108 0.892 11 C -0.168 4.168 12 N -0.455 5.455 13 C -0.057 4.057 14 C -0.033 4.033 15 N -0.496 5.496 16 C 0.184 3.816 17 N -0.663 5.663 18 C 0.049 3.951 19 C 0.438 3.562 20 O -0.583 6.583 21 N -0.562 5.562 22 C -0.300 4.300 23 H 0.104 0.896 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.267 1.267 28 H -0.281 1.281 29 H -0.281 1.281 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.401 0.599 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.172 0.828 42 H 0.168 0.832 43 H 0.202 0.798 44 H 0.346 0.654 45 H 0.044 0.956 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.690 0.038 -22.044 22.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.040 4.040 3 H 0.067 0.933 4 C -0.005 4.005 5 N -0.380 5.380 6 C 0.310 3.690 7 O -0.415 6.415 8 C -0.198 4.198 9 C 0.048 3.952 10 H 0.127 0.873 11 C -0.226 4.226 12 N -0.138 5.138 13 C -0.190 4.190 14 C -0.180 4.180 15 N -0.214 5.214 16 C -0.099 4.099 17 N -0.299 5.299 18 C -0.084 4.084 19 C 0.223 3.777 20 O -0.468 6.468 21 N -0.198 5.198 22 C -0.429 4.429 23 H 0.122 0.878 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.207 1.207 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.237 0.763 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.189 0.811 42 H 0.185 0.815 43 H 0.219 0.781 44 H 0.167 0.833 45 H 0.062 0.938 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.367 -1.466 -22.004 22.179 hybrid contribution 0.430 1.382 0.687 1.602 sum 2.797 -0.084 -21.317 21.500 Atomic orbital electron populations 1.21739 0.93274 1.03027 1.01634 1.21822 0.97256 0.95919 0.88961 0.93318 1.21649 0.78862 1.02230 0.97801 1.46048 1.08433 1.59775 1.23711 1.20153 0.89181 0.77431 0.82275 1.90701 1.70308 1.47367 1.33143 1.22048 0.93423 1.03955 1.00355 1.21126 0.75802 0.99020 0.99287 0.87346 1.22309 1.04372 0.93102 1.02785 1.45790 1.07132 1.41974 1.18899 1.22758 0.91362 1.07091 0.97786 1.22315 0.96337 1.03842 0.95548 1.70325 1.19432 1.17735 1.13894 1.24959 0.85535 1.02619 0.96754 1.60124 1.34725 1.32320 1.02700 1.21763 1.01565 0.93752 0.91275 1.19773 0.85208 0.88218 0.84461 1.90531 1.55418 1.16070 1.84738 1.41875 1.57538 1.12424 1.07993 1.19751 1.39955 0.96474 0.86758 0.87832 1.25277 0.97560 0.95784 0.99290 1.69618 1.48518 1.08867 1.27182 0.85798 0.78262 0.79652 0.80644 1.19171 1.20710 1.20698 0.91465 0.91898 0.92468 0.90669 0.90089 0.76335 0.87426 0.87899 0.88322 0.91809 0.91880 0.81062 0.81489 0.78107 0.83253 0.93848 0.89354 0.77466 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.42 37.16 0.35 -1.00 16 2 C 0.07 0.73 2.81 -67.71 -0.19 0.54 16 3 H 0.05 0.46 7.80 -51.93 -0.40 0.06 16 4 C 0.12 1.12 5.31 -4.04 -0.02 1.10 16 5 N -0.73 -6.43 4.99 -60.29 -0.30 -6.73 16 6 C 0.52 4.82 7.55 -10.98 -0.08 4.74 16 7 O -0.54 -6.38 13.97 5.55 0.08 -6.31 16 8 C -0.16 -1.09 5.17 -27.88 -0.14 -1.23 16 9 C 0.15 1.11 2.70 -67.93 -0.18 0.93 16 10 H 0.11 0.80 7.90 -51.93 -0.41 0.39 16 11 C -0.17 -1.30 8.99 37.16 0.33 -0.96 16 12 N -0.45 -3.84 2.62 -111.46 -0.29 -4.13 16 13 C -0.06 -0.48 11.54 -16.57 -0.19 -0.67 16 14 C -0.03 -0.32 11.87 -17.81 -0.21 -0.54 16 15 N -0.50 -6.03 11.25 -14.67 -0.17 -6.19 16 16 C 0.18 1.80 11.65 -90.37 -1.05 0.75 16 17 N -0.66 -9.36 5.93 -107.98 -0.64 -10.00 16 18 C 0.05 0.78 5.97 -4.97 -0.03 0.75 16 19 C 0.44 9.76 7.82 -10.98 -0.09 9.67 16 20 O -0.58 -15.10 15.78 5.55 0.09 -15.01 16 21 N -0.56 -13.65 5.29 -10.96 -0.06 -13.71 16 22 C -0.30 -8.12 9.68 -14.93 -0.14 -8.27 16 23 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -23.91 13.05 55.50 0.72 -23.18 16 26 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 27 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 28 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 29 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.65 7.45 -51.93 -0.39 0.27 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.40 3.21 7.37 -40.82 -0.30 2.91 16 36 H 0.11 0.67 8.08 -51.93 -0.42 0.25 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.91 5.95 -51.93 -0.31 0.60 16 39 H 0.06 0.49 8.14 -51.94 -0.42 0.07 16 40 H 0.06 0.45 7.95 -51.93 -0.41 0.04 16 41 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.20 1.48 8.06 -52.49 -0.42 1.05 16 44 H 0.35 4.95 6.41 -39.30 -0.25 4.70 16 45 H 0.04 0.60 8.05 -51.93 -0.42 0.18 16 46 H 0.09 1.32 7.44 -51.93 -0.39 0.93 16 47 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 48 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -33.85 400.49 -8.64 -42.49 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -7.34 Total: 14.85 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -1.75 Total: 6.30 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: -0.73 Total: -63.93 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: 0.17 Total: -21.32 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.85 -8.64 -42.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731623769.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.004 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds