Wall clock time and date at job start Tue Mar 31 2020 19:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46719 * 2 1 4 4 C 1.52999 * 109.47001 * 240.00131 * 2 1 3 5 5 N 1.46501 * 109.46652 * 184.99911 * 4 2 1 6 6 C 1.34783 * 119.99868 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99762 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00114 * 179.97438 * 6 5 4 9 9 C 1.52999 * 109.46898 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47476 * 55.00261 * 9 8 6 11 11 C 1.53003 * 109.47384 * 294.99876 * 9 8 6 12 12 N 1.46504 * 109.47011 * 175.00072 * 9 8 6 13 13 C 1.36876 * 126.40093 * 240.31898 * 12 9 8 14 14 C 1.34665 * 106.82156 * 180.12098 * 13 12 9 15 15 N 1.34127 * 108.01668 * 359.58498 * 14 13 12 16 16 C 1.30500 * 109.25894 * 0.26753 * 15 14 13 17 17 N 1.46903 * 109.47031 * 120.00092 * 2 1 3 18 18 C 1.46905 * 110.99473 * 274.99990 * 17 2 1 19 19 C 1.50705 * 109.46389 * 179.97438 * 18 17 2 20 20 O 1.21292 * 120.00134 * 0.02562 * 19 18 17 21 21 N 1.34781 * 119.99402 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99390 * 180.02562 * 21 19 18 23 23 H 1.07996 * 120.00371 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99791 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99734 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00095 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46874 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47106 * 120.00091 * 26 24 22 29 29 H 1.48493 * 109.47177 * 239.99871 * 26 24 22 30 30 H 1.08999 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47360 * 300.00182 * 1 2 3 32 32 H 1.09001 * 109.46947 * 60.00121 * 1 2 3 33 33 H 1.08995 * 109.47121 * 64.99974 * 4 2 1 34 34 H 1.08998 * 109.46847 * 304.99643 * 4 2 1 35 35 H 0.96992 * 120.00302 * 0.02562 * 5 4 2 36 36 H 1.08998 * 109.46607 * 60.00470 * 8 6 5 37 37 H 1.08993 * 109.46908 * 300.00211 * 8 6 5 38 38 H 1.09003 * 109.46590 * 59.99911 * 11 9 8 39 39 H 1.08987 * 109.47559 * 180.02562 * 11 9 8 40 40 H 1.09001 * 109.47128 * 300.00597 * 11 9 8 41 41 H 1.08002 * 126.59064 * 0.02562 * 13 12 9 42 42 H 1.08002 * 125.99463 * 179.85418 * 14 13 12 43 43 H 1.07994 * 125.64966 * 180.02562 * 16 15 14 44 44 H 1.00892 * 110.99836 * 151.04690 * 17 2 1 45 45 H 1.08995 * 109.47330 * 299.99840 * 18 17 2 46 46 H 1.08994 * 109.47153 * 60.00832 * 18 17 2 47 47 H 0.96991 * 120.00364 * 0.02562 * 21 19 18 48 48 H 0.97002 * 119.99717 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1905 6 6 4.1731 -1.4291 -2.1907 7 8 3.5700 -1.8841 -3.1395 8 6 5.6750 -1.5367 -2.1306 9 6 6.1850 -2.2580 -3.3798 10 1 5.8213 -1.7445 -4.2698 11 6 5.6755 -3.7007 -3.3794 12 7 7.6500 -2.2575 -3.3801 13 6 8.4619 -1.7013 -4.3314 14 6 9.7309 -1.9310 -3.9434 15 7 9.6948 -2.6010 -2.7820 16 6 8.4517 -2.8002 -2.4385 17 7 2.0197 -0.6925 1.1995 18 6 2.0824 0.2227 2.3469 19 6 2.5873 -0.5218 3.5560 20 8 2.8677 -1.6988 3.4702 21 7 2.7282 0.1205 4.7325 22 6 3.1880 -0.5566 5.8324 23 1 3.4376 -1.6046 5.7560 24 6 3.3327 0.1054 7.0454 25 7 3.0294 1.3807 7.1382 26 14 3.9585 -0.8174 8.5442 27 1 4.2261 -2.2316 8.1787 28 1 5.2121 -0.1847 9.0273 29 1 2.9342 -0.7695 9.6183 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.7517 -0.1583 -2.1369 34 1 1.6054 -1.7198 -1.2951 35 1 3.9824 -0.4628 -0.4316 36 1 5.9637 -2.0990 -1.2426 37 1 6.1093 -0.5380 -2.0854 38 1 4.5855 -3.7010 -3.3792 39 1 6.0391 -4.2147 -4.2690 40 1 6.0392 -4.2142 -2.4894 41 1 8.1456 -1.1799 -5.2227 42 1 10.6215 -1.6251 -4.4722 43 1 8.1191 -3.3135 -1.5484 44 1 2.9173 -1.1205 1.0287 45 1 2.7588 1.0462 2.1182 46 1 1.0871 0.6163 2.5525 47 1 2.5043 1.0618 4.8010 48 1 3.1308 1.8429 7.9850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731623769.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:03 Heat of formation + Delta-G solvation = -34.703017 kcal Electronic energy + Delta-G solvation = -28500.595244 eV Core-core repulsion = 24397.617947 eV Total energy + Delta-G solvation = -4102.977297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.03778 -41.05966 -40.17508 -38.34930 -36.62388 -35.97037 -34.99160 -33.27941 -32.32760 -31.79173 -30.19191 -29.34925 -28.13459 -26.90621 -25.65711 -24.26991 -22.31321 -21.81798 -21.65671 -21.15372 -20.85609 -19.91867 -18.67852 -18.16698 -17.47339 -17.05989 -17.03876 -16.76257 -16.45053 -16.22463 -16.04548 -15.71108 -15.53138 -15.18589 -14.83326 -14.71555 -14.51333 -14.34477 -14.17737 -13.92421 -13.71284 -13.60564 -13.48835 -13.28590 -12.97455 -12.87892 -12.75816 -12.59464 -12.50337 -12.39238 -12.28749 -12.11603 -11.87688 -11.50980 -11.03317 -10.91098 -10.61602 -10.33954 -10.17110 -10.00991 -9.43851 -9.37207 -8.46979 -5.95126 1.13753 1.36532 1.42699 1.50569 1.56026 1.65940 2.05565 2.23258 2.24885 2.29269 2.87440 3.20981 3.39286 3.48681 3.61686 3.70162 3.78495 3.87936 4.02914 4.11228 4.18078 4.26389 4.39288 4.40349 4.45585 4.48458 4.59334 4.60745 4.64512 4.71145 4.76845 4.84623 4.86245 4.93394 5.05822 5.14388 5.30040 5.39238 5.41738 5.46120 5.84483 5.88121 6.08961 6.26421 6.35334 6.37311 6.60173 7.09182 7.13287 7.16082 7.57091 8.12046 8.70454 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009756 B = 0.002310 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.354098 B =12119.593713 C =14383.079105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.077 3.923 3 H 0.068 0.932 4 C 0.124 3.876 5 N -0.724 5.724 6 C 0.525 3.475 7 O -0.566 6.566 8 C -0.150 4.150 9 C 0.156 3.844 10 H 0.112 0.888 11 C -0.163 4.163 12 N -0.451 5.451 13 C -0.050 4.050 14 C -0.058 4.058 15 N -0.538 5.538 16 C 0.174 3.826 17 N -0.680 5.680 18 C 0.064 3.936 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.331 4.331 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.990 3.010 27 H -0.273 1.273 28 H -0.271 1.271 29 H -0.273 1.273 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.407 0.593 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.201 0.799 42 H 0.181 0.819 43 H 0.218 0.782 44 H 0.344 0.656 45 H 0.073 0.927 46 H 0.103 0.897 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.490 1.267 -22.729 22.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.032 4.032 3 H 0.086 0.914 4 C 0.000 4.000 5 N -0.377 5.377 6 C 0.311 3.689 7 O -0.445 6.445 8 C -0.190 4.190 9 C 0.053 3.947 10 H 0.130 0.870 11 C -0.221 4.221 12 N -0.133 5.133 13 C -0.183 4.183 14 C -0.205 4.205 15 N -0.256 5.256 16 C -0.108 4.108 17 N -0.315 5.315 18 C -0.068 4.068 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.210 5.210 22 C -0.460 4.460 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.814 3.186 27 H -0.198 1.198 28 H -0.196 1.196 29 H -0.198 1.198 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.243 0.757 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.217 0.783 42 H 0.198 0.802 43 H 0.235 0.765 44 H 0.164 0.836 45 H 0.091 0.909 46 H 0.121 0.879 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.154 -0.203 -22.696 22.799 hybrid contribution 0.454 0.975 0.818 1.352 sum 2.608 0.773 -21.878 22.046 Atomic orbital electron populations 1.21755 0.92822 1.02505 1.02571 1.21867 0.97473 0.96491 0.87419 0.91405 1.21550 0.79186 1.01399 0.97838 1.46030 1.08248 1.59561 1.23812 1.20466 0.89962 0.76699 0.81739 1.90696 1.71051 1.48532 1.34248 1.22005 0.91708 1.04814 1.00466 1.21104 0.75094 0.98764 0.99706 0.86971 1.22233 1.03359 0.93552 1.02952 1.45835 1.07382 1.41521 1.18602 1.23213 0.90822 1.06109 0.98170 1.22684 0.97762 1.04492 0.95540 1.70283 1.20884 1.19177 1.15297 1.25285 0.85303 1.02733 0.97476 1.60110 1.34831 1.32903 1.03690 1.21610 1.02539 0.93687 0.88951 1.20905 0.83189 0.87990 0.85455 1.90503 1.56629 1.18180 1.85611 1.41942 1.58252 1.12592 1.08254 1.19670 1.41902 0.95895 0.88565 0.90361 1.25997 0.97311 0.96595 1.01314 1.69670 1.48710 1.09626 1.28069 0.84912 0.78158 0.78108 0.77444 1.19811 1.19627 1.19789 0.92757 0.92469 0.90017 0.89459 0.91761 0.75683 0.86546 0.86560 0.89700 0.91915 0.91504 0.78255 0.80224 0.76529 0.83551 0.90932 0.87861 0.76954 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.42 71.98 0.68 -1.72 16 2 C 0.08 1.39 2.81 44.92 0.13 1.52 16 3 H 0.07 1.03 7.80 -2.39 -0.02 1.01 16 4 C 0.12 2.13 5.31 86.38 0.46 2.59 16 5 N -0.72 -11.52 4.99 -463.06 -2.31 -13.83 16 6 C 0.52 8.88 7.55 87.66 0.66 9.54 16 7 O -0.57 -12.86 13.97 -3.04 -0.04 -12.90 16 8 C -0.15 -1.80 5.17 29.85 0.15 -1.64 16 9 C 0.16 2.05 2.70 44.99 0.12 2.18 16 10 H 0.11 1.44 7.90 -2.39 -0.02 1.42 16 11 C -0.16 -2.39 8.99 71.98 0.65 -1.74 16 12 N -0.45 -6.95 2.62 -506.54 -1.33 -8.27 16 13 C -0.05 -0.76 11.54 83.09 0.96 0.20 16 14 C -0.06 -1.12 11.87 83.52 0.99 -0.13 16 15 N -0.54 -12.93 11.25 -200.32 -2.25 -15.18 16 16 C 0.17 3.28 11.65 180.26 2.10 5.38 16 17 N -0.68 -18.10 5.93 -495.55 -2.94 -21.04 16 18 C 0.06 1.92 5.97 85.56 0.51 2.43 16 19 C 0.44 19.39 7.82 87.66 0.69 20.07 16 20 O -0.62 -32.68 15.78 -3.07 -0.05 -32.73 16 21 N -0.57 -27.98 5.29 -306.97 -1.62 -29.60 16 22 C -0.33 -18.20 9.68 84.04 0.81 -17.39 16 23 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 24 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 25 N -0.92 -48.33 13.05 21.66 0.28 -48.05 16 26 Si 0.99 42.05 29.55 68.60 2.03 44.08 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 28 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 29 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.06 7.45 -2.39 -0.02 1.04 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.41 5.68 7.37 -92.71 -0.68 4.99 16 36 H 0.12 1.24 8.08 -2.39 -0.02 1.22 16 37 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.53 5.95 -2.39 -0.01 1.52 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 0.91 7.95 -2.39 -0.02 0.89 16 41 H 0.20 1.69 8.06 -2.91 -0.02 1.67 16 42 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 43 H 0.22 3.01 8.06 -2.91 -0.02 2.99 16 44 H 0.34 9.41 6.41 -89.70 -0.58 8.83 16 45 H 0.07 1.79 8.05 -2.39 -0.02 1.77 16 46 H 0.10 2.83 7.44 -2.39 -0.02 2.81 16 47 H 0.40 18.32 7.90 -92.72 -0.73 17.59 16 48 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 Total: -1.00 -73.79 400.49 0.15 -73.64 By element: Atomic # 1 Polarization: 43.77 SS G_CDS: -0.99 Total: 42.77 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 9.37 Total: 21.12 kcal Atomic # 7 Polarization: -125.81 SS G_CDS: -10.17 Total: -135.98 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -0.09 Total: -45.63 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -73.79 0.15 -73.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731623769.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.933 kcal (2) G-P(sol) polarization free energy of solvation -73.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds