Wall clock time and date at job start Tue Mar 31 2020 19:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47159 * 2 1 4 4 C 1.53003 * 109.47299 * 239.99860 * 2 1 3 5 5 C 1.50706 * 109.47134 * 65.00108 * 4 2 1 6 6 O 1.21288 * 119.99707 * 359.97438 * 5 4 2 7 7 N 1.34775 * 119.99969 * 179.97438 * 5 4 2 8 8 C 1.46498 * 119.99673 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47043 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.47446 * 295.00641 * 9 8 7 11 11 C 1.52995 * 109.47146 * 174.99892 * 9 8 7 12 12 N 1.46906 * 109.46965 * 55.00259 * 9 8 7 13 13 C 1.46898 * 110.99888 * 204.99952 * 12 9 8 14 14 C 1.50705 * 109.46661 * 180.02562 * 13 12 9 15 15 O 1.21288 * 120.00125 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99549 * 179.97438 * 14 13 12 17 17 C 1.37103 * 120.00062 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99229 * 0.02562 * 17 16 14 19 19 C 1.38942 * 120.00207 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99885 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00123 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46979 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47480 * 120.00092 * 21 19 17 24 24 H 1.48497 * 109.47080 * 240.00247 * 21 19 17 25 25 N 1.46503 * 109.47210 * 119.99833 * 2 1 3 26 26 C 1.36876 * 126.39916 * 240.00274 * 25 2 1 27 27 C 1.34673 * 106.81880 * 179.97438 * 26 25 2 28 28 N 1.34129 * 108.01772 * 0.02562 * 27 26 25 29 29 C 1.30500 * 109.25823 * 359.72160 * 28 27 26 30 30 H 1.09002 * 109.46731 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47403 * 300.00046 * 1 2 3 32 32 H 1.09007 * 109.46839 * 60.00140 * 1 2 3 33 33 H 1.08994 * 109.47192 * 304.99866 * 4 2 1 34 34 H 1.09001 * 109.47119 * 184.99616 * 4 2 1 35 35 H 0.96995 * 120.00100 * 0.02562 * 7 5 4 36 36 H 1.09004 * 109.47353 * 60.00016 * 8 7 5 37 37 H 1.08999 * 109.47248 * 300.00266 * 8 7 5 38 38 H 1.09003 * 109.47335 * 180.02562 * 11 9 8 39 39 H 1.09002 * 109.47311 * 300.00221 * 11 9 8 40 40 H 1.09002 * 109.46959 * 60.00507 * 11 9 8 41 41 H 1.00902 * 110.99923 * 328.95894 * 12 9 8 42 42 H 1.08995 * 109.47296 * 299.99911 * 13 12 9 43 43 H 1.08997 * 109.47334 * 60.00212 * 13 12 9 44 44 H 0.97003 * 120.00664 * 0.02562 * 16 14 13 45 45 H 0.97010 * 119.99812 * 180.02562 * 20 19 17 46 46 H 1.08000 * 126.59044 * 0.03506 * 26 25 2 47 47 H 1.07996 * 125.99077 * 179.97438 * 27 26 25 48 48 H 1.07993 * 125.65233 * 180.29348 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0110 1.0870 -2.3633 7 7 1.9855 -0.3914 -3.7001 8 6 1.5974 0.3649 -4.8933 9 6 2.1087 -0.3556 -6.1424 10 1 3.1986 -0.3545 -6.1421 11 6 1.5982 0.3652 -7.3917 12 7 1.6205 -1.7412 -6.1428 13 6 2.5054 -2.6109 -6.9292 14 6 1.9732 -4.0207 -6.9070 15 8 0.9572 -4.2758 -6.2958 16 7 2.6265 -4.9979 -7.5663 17 6 2.1428 -6.2806 -7.5457 18 1 1.2380 -6.5077 -7.0015 19 6 2.8159 -7.2880 -8.2259 20 7 3.9165 -7.0113 -8.8886 21 14 2.1565 -9.0355 -8.1984 22 1 0.9134 -9.0828 -7.3873 23 1 1.8599 -9.4746 -9.5857 24 1 3.1721 -9.9385 -7.5999 25 7 2.0184 -0.6906 1.1962 26 6 2.8084 -0.1553 2.1774 27 6 3.0182 -1.1294 3.0835 28 7 2.3742 -2.2296 2.6664 29 6 1.7684 -1.9726 1.5395 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6055 -1.7198 -1.2951 34 1 3.1264 -0.7994 -1.2056 35 1 2.4893 -1.2153 -3.7907 36 1 2.0313 1.3638 -4.8473 37 1 0.5111 0.4423 -4.9370 38 1 1.9621 -0.1484 -8.2817 39 1 0.5082 0.3640 -7.3921 40 1 1.9605 1.3933 -7.3915 41 1 1.5161 -2.0880 -5.2010 42 1 2.5447 -2.2540 -7.9583 43 1 3.5071 -2.5934 -6.5000 44 1 3.4393 -4.7940 -8.0549 45 1 4.3863 -7.7146 -9.3638 46 1 3.1895 0.8544 2.2178 47 1 3.6031 -1.0405 3.9869 48 1 1.1686 -2.6701 0.9739 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731623775.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:06 Heat of formation + Delta-G solvation = -10.504899 kcal Electronic energy + Delta-G solvation = -28498.707356 eV Core-core repulsion = 24396.779368 eV Total energy + Delta-G solvation = -4101.927988 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.35227 -40.29260 -38.56557 -37.26423 -35.90737 -34.28788 -33.85339 -31.55688 -31.28756 -30.87594 -29.51317 -28.69334 -26.74515 -25.93657 -24.07179 -23.56529 -21.62223 -21.10532 -20.80640 -20.21287 -19.38131 -18.05892 -17.92982 -17.18818 -16.43680 -16.26392 -16.03132 -15.54857 -15.40188 -15.09694 -14.91089 -14.53685 -14.20379 -14.08527 -13.95125 -13.83746 -13.56252 -13.49387 -13.26701 -12.92182 -12.80935 -12.63076 -12.18814 -11.99497 -11.96633 -11.82043 -11.73149 -11.68969 -11.49497 -11.15374 -10.97375 -10.39057 -10.28718 -10.26987 -10.16331 -9.89241 -9.58866 -9.41717 -8.75372 -8.57367 -8.23681 -8.03758 -6.48478 -3.89583 1.80647 2.21571 2.32018 2.93028 2.97973 3.11944 3.23387 3.30212 3.81140 3.94536 3.98807 4.19951 4.23832 4.36586 4.50446 4.52951 4.62166 4.71998 4.86994 4.96340 5.04222 5.07289 5.16399 5.18589 5.19169 5.32761 5.39072 5.42566 5.49127 5.57772 5.61354 5.67677 5.79903 5.86163 5.87850 6.01513 6.06375 6.15087 6.25170 6.50289 6.93026 7.02491 7.05907 7.45069 7.49182 7.79812 7.86439 7.99040 8.53128 9.10962 9.46305 9.96965 10.69092 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009759 B = 0.002309 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.493587 B =12123.668617 C =14387.111186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.151 3.849 3 H 0.108 0.892 4 C -0.157 4.157 5 C 0.524 3.476 6 O -0.538 6.538 7 N -0.727 5.727 8 C 0.118 3.882 9 C 0.071 3.929 10 H 0.049 0.951 11 C -0.138 4.138 12 N -0.664 5.664 13 C 0.049 3.951 14 C 0.438 3.562 15 O -0.583 6.583 16 N -0.562 5.562 17 C -0.300 4.300 18 H 0.104 0.896 19 C 0.023 3.977 20 N -0.901 5.901 21 Si 0.929 3.071 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.281 1.281 25 N -0.455 5.455 26 C -0.057 4.057 27 C -0.033 4.033 28 N -0.496 5.496 29 C 0.184 3.816 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.402 0.598 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.346 0.654 42 H 0.088 0.912 43 H 0.044 0.956 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.172 0.828 47 H 0.168 0.832 48 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.891 17.836 13.224 22.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.048 3.952 3 H 0.127 0.873 4 C -0.198 4.198 5 C 0.310 3.690 6 O -0.415 6.415 7 N -0.380 5.380 8 C -0.005 4.005 9 C -0.040 4.040 10 H 0.067 0.933 11 C -0.197 4.197 12 N -0.299 5.299 13 C -0.084 4.084 14 C 0.223 3.777 15 O -0.468 6.468 16 N -0.198 5.198 17 C -0.429 4.429 18 H 0.122 0.878 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.207 1.207 25 N -0.138 5.138 26 C -0.190 4.190 27 C -0.180 4.180 28 N -0.214 5.214 29 C -0.099 4.099 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.237 0.763 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.167 0.833 42 H 0.106 0.894 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.189 0.811 47 H 0.185 0.815 48 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.627 17.698 13.370 22.189 hybrid contribution 1.446 -0.566 -0.390 1.601 sum 0.819 17.132 12.979 21.509 Atomic orbital electron populations 1.22313 0.92203 1.03362 1.04709 1.21125 0.96363 0.96692 0.81056 0.87348 1.22047 1.04103 1.01338 0.92278 1.20153 0.79117 0.85457 0.84314 1.90701 1.39735 1.24497 1.86591 1.46046 1.57780 1.28042 1.06092 1.21649 1.01568 0.94926 0.82401 1.21821 0.97501 0.89790 0.94843 0.93316 1.21739 1.02482 0.98846 0.96609 1.60123 1.50331 0.99967 1.19454 1.21762 0.93737 0.93227 0.99627 1.19770 0.86883 0.85913 0.85089 1.90530 1.26047 1.82929 1.47251 1.41878 1.24997 1.07683 1.45277 1.19750 1.09760 0.83224 1.30204 0.87833 1.25273 0.95833 1.00461 0.96336 1.69619 1.17084 1.34486 1.32998 0.85800 0.78948 0.81535 0.78079 1.19171 1.20691 1.20715 1.45789 1.37989 1.11586 1.18432 1.22759 1.02611 1.01292 0.92331 1.22316 1.04749 0.89598 1.01382 1.70326 1.12270 1.28120 1.10668 1.24959 1.03614 0.85408 0.95885 0.91876 0.91806 0.88322 0.87429 0.87901 0.76333 0.90672 0.90086 0.91900 0.91465 0.92461 0.83252 0.89354 0.93851 0.77465 0.91855 0.81062 0.81490 0.78108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 8.98 37.16 0.33 -0.96 16 2 C 0.15 1.11 2.70 -67.93 -0.18 0.93 16 3 H 0.11 0.80 7.90 -51.93 -0.41 0.39 16 4 C -0.16 -1.09 5.18 -27.88 -0.14 -1.23 16 5 C 0.52 4.82 7.55 -10.98 -0.08 4.74 16 6 O -0.54 -6.38 13.97 5.55 0.08 -6.31 16 7 N -0.73 -6.43 4.99 -60.29 -0.30 -6.73 16 8 C 0.12 1.12 5.31 -4.04 -0.02 1.10 16 9 C 0.07 0.73 2.81 -67.71 -0.19 0.54 16 10 H 0.05 0.46 7.80 -51.93 -0.40 0.06 16 11 C -0.14 -1.35 9.41 37.16 0.35 -1.00 16 12 N -0.66 -9.36 5.92 -107.99 -0.64 -10.00 16 13 C 0.05 0.78 5.97 -4.97 -0.03 0.75 16 14 C 0.44 9.76 7.82 -10.98 -0.09 9.67 16 15 O -0.58 -15.10 15.78 5.55 0.09 -15.01 16 16 N -0.56 -13.65 5.29 -10.96 -0.06 -13.71 16 17 C -0.30 -8.12 9.68 -14.93 -0.14 -8.27 16 18 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -23.91 13.05 55.50 0.72 -23.18 16 21 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 25 N -0.45 -3.84 2.62 -111.46 -0.29 -4.13 16 26 C -0.06 -0.48 11.54 -16.56 -0.19 -0.67 16 27 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 28 N -0.50 -6.03 11.25 -14.67 -0.16 -6.19 16 29 C 0.18 1.80 11.65 -90.37 -1.05 0.75 16 30 H 0.06 0.45 7.94 -51.93 -0.41 0.04 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.91 5.95 -51.93 -0.31 0.60 16 33 H 0.11 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.40 3.21 7.37 -40.82 -0.30 2.91 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.65 7.45 -51.93 -0.39 0.27 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.35 4.95 6.41 -39.29 -0.25 4.70 16 42 H 0.09 1.32 7.43 -51.93 -0.39 0.93 16 43 H 0.04 0.60 8.05 -51.93 -0.42 0.18 16 44 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 45 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 46 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 47 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 48 H 0.20 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -33.85 400.49 -8.64 -42.49 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -7.34 Total: 14.85 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -1.75 Total: 6.30 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -0.73 Total: -63.94 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: 0.17 Total: -21.32 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.85 -8.64 -42.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731623775.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.984 kcal (2) G-P(sol) polarization free energy of solvation -33.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds