Wall clock time and date at job start Tue Mar 31 2020 19:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47159 * 2 1 4 4 C 1.53003 * 109.47299 * 239.99860 * 2 1 3 5 5 C 1.50706 * 109.47134 * 65.00108 * 4 2 1 6 6 O 1.21288 * 119.99707 * 359.97438 * 5 4 2 7 7 N 1.34775 * 119.99969 * 179.97438 * 5 4 2 8 8 C 1.46498 * 119.99673 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47043 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.47446 * 295.00641 * 9 8 7 11 11 C 1.52995 * 109.47146 * 174.99892 * 9 8 7 12 12 N 1.46906 * 109.46965 * 55.00259 * 9 8 7 13 13 C 1.46898 * 110.99888 * 204.99952 * 12 9 8 14 14 C 1.50705 * 109.46661 * 180.02562 * 13 12 9 15 15 O 1.21288 * 120.00125 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99549 * 179.97438 * 14 13 12 17 17 C 1.37103 * 120.00062 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99229 * 0.02562 * 17 16 14 19 19 C 1.38942 * 120.00207 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99885 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00123 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46979 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47480 * 120.00092 * 21 19 17 24 24 H 1.48497 * 109.47080 * 240.00247 * 21 19 17 25 25 N 1.46503 * 109.47210 * 119.99833 * 2 1 3 26 26 C 1.36876 * 126.39916 * 240.00274 * 25 2 1 27 27 C 1.34673 * 106.81880 * 179.97438 * 26 25 2 28 28 N 1.34129 * 108.01772 * 0.02562 * 27 26 25 29 29 C 1.30500 * 109.25823 * 359.72160 * 28 27 26 30 30 H 1.09002 * 109.46731 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47403 * 300.00046 * 1 2 3 32 32 H 1.09007 * 109.46839 * 60.00140 * 1 2 3 33 33 H 1.08994 * 109.47192 * 304.99866 * 4 2 1 34 34 H 1.09001 * 109.47119 * 184.99616 * 4 2 1 35 35 H 0.96995 * 120.00100 * 0.02562 * 7 5 4 36 36 H 1.09004 * 109.47353 * 60.00016 * 8 7 5 37 37 H 1.08999 * 109.47248 * 300.00266 * 8 7 5 38 38 H 1.09003 * 109.47335 * 180.02562 * 11 9 8 39 39 H 1.09002 * 109.47311 * 300.00221 * 11 9 8 40 40 H 1.09002 * 109.46959 * 60.00507 * 11 9 8 41 41 H 1.00902 * 110.99923 * 328.95894 * 12 9 8 42 42 H 1.08995 * 109.47296 * 299.99911 * 13 12 9 43 43 H 1.08997 * 109.47334 * 60.00212 * 13 12 9 44 44 H 0.97003 * 120.00664 * 0.02562 * 16 14 13 45 45 H 0.97010 * 119.99812 * 180.02562 * 20 19 17 46 46 H 1.08000 * 126.59044 * 0.03506 * 26 25 2 47 47 H 1.07996 * 125.99077 * 179.97438 * 27 26 25 48 48 H 1.07993 * 125.65233 * 180.29348 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0110 1.0870 -2.3633 7 7 1.9855 -0.3914 -3.7001 8 6 1.5974 0.3649 -4.8933 9 6 2.1087 -0.3556 -6.1424 10 1 3.1986 -0.3545 -6.1421 11 6 1.5982 0.3652 -7.3917 12 7 1.6205 -1.7412 -6.1428 13 6 2.5054 -2.6109 -6.9292 14 6 1.9732 -4.0207 -6.9070 15 8 0.9572 -4.2758 -6.2958 16 7 2.6265 -4.9979 -7.5663 17 6 2.1428 -6.2806 -7.5457 18 1 1.2380 -6.5077 -7.0015 19 6 2.8159 -7.2880 -8.2259 20 7 3.9165 -7.0113 -8.8886 21 14 2.1565 -9.0355 -8.1984 22 1 0.9134 -9.0828 -7.3873 23 1 1.8599 -9.4746 -9.5857 24 1 3.1721 -9.9385 -7.5999 25 7 2.0184 -0.6906 1.1962 26 6 2.8084 -0.1553 2.1774 27 6 3.0182 -1.1294 3.0835 28 7 2.3742 -2.2296 2.6664 29 6 1.7684 -1.9726 1.5395 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6055 -1.7198 -1.2951 34 1 3.1264 -0.7994 -1.2056 35 1 2.4893 -1.2153 -3.7907 36 1 2.0313 1.3638 -4.8473 37 1 0.5111 0.4423 -4.9370 38 1 1.9621 -0.1484 -8.2817 39 1 0.5082 0.3640 -7.3921 40 1 1.9605 1.3933 -7.3915 41 1 1.5161 -2.0880 -5.2010 42 1 2.5447 -2.2540 -7.9583 43 1 3.5071 -2.5934 -6.5000 44 1 3.4393 -4.7940 -8.0549 45 1 4.3863 -7.7146 -9.3638 46 1 3.1895 0.8544 2.2178 47 1 3.6031 -1.0405 3.9869 48 1 1.1686 -2.6701 0.9739 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731623775.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:05 Heat of formation + Delta-G solvation = -34.720050 kcal Electronic energy + Delta-G solvation = -28499.757403 eV Core-core repulsion = 24396.779368 eV Total energy + Delta-G solvation = -4102.978036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.03678 -41.05967 -40.17592 -38.34956 -36.62363 -35.97094 -34.99236 -33.27981 -32.32813 -31.79194 -30.19194 -29.34728 -28.13456 -26.90660 -25.65732 -24.27042 -22.31316 -21.81712 -21.65664 -21.15388 -20.85691 -19.91827 -18.67826 -18.16774 -17.47411 -17.05976 -17.03898 -16.76288 -16.45012 -16.22438 -16.04445 -15.71197 -15.53124 -15.18554 -14.83403 -14.71685 -14.51423 -14.34351 -14.17486 -13.92643 -13.71256 -13.60652 -13.48831 -13.28637 -12.97458 -12.87871 -12.75750 -12.59480 -12.50385 -12.39241 -12.28736 -12.11616 -11.87661 -11.51016 -11.03257 -10.91092 -10.61619 -10.33983 -10.17147 -10.01014 -9.43813 -9.37206 -8.46976 -5.95161 1.13775 1.36530 1.42686 1.50503 1.55999 1.65816 2.05565 2.23344 2.24880 2.29252 2.87422 3.21000 3.39288 3.48654 3.61629 3.70163 3.78604 3.87941 4.02831 4.11198 4.18043 4.26346 4.39285 4.40341 4.45547 4.48526 4.59355 4.60720 4.64468 4.71190 4.76785 4.84575 4.86209 4.93428 5.05764 5.14419 5.30023 5.39240 5.41685 5.46116 5.84490 5.88113 6.08956 6.26423 6.35299 6.37251 6.60138 7.09146 7.13279 7.16072 7.57077 8.12020 8.70439 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009759 B = 0.002309 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.493587 B =12123.668617 C =14387.111186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.156 3.844 3 H 0.112 0.888 4 C -0.149 4.149 5 C 0.525 3.475 6 O -0.566 6.566 7 N -0.724 5.724 8 C 0.124 3.876 9 C 0.077 3.923 10 H 0.068 0.932 11 C -0.138 4.138 12 N -0.680 5.680 13 C 0.064 3.936 14 C 0.437 3.563 15 O -0.623 6.623 16 N -0.573 5.573 17 C -0.331 4.331 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.990 3.010 22 H -0.273 1.273 23 H -0.272 1.272 24 H -0.271 1.271 25 N -0.451 5.451 26 C -0.050 4.050 27 C -0.058 4.058 28 N -0.538 5.538 29 C 0.174 3.826 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.407 0.593 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.344 0.656 42 H 0.103 0.897 43 H 0.073 0.927 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.201 0.799 47 H 0.181 0.819 48 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.978 18.731 13.050 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.053 3.947 3 H 0.130 0.870 4 C -0.190 4.190 5 C 0.311 3.689 6 O -0.445 6.445 7 N -0.376 5.376 8 C 0.000 4.000 9 C -0.032 4.032 10 H 0.086 0.914 11 C -0.197 4.197 12 N -0.315 5.315 13 C -0.068 4.068 14 C 0.225 3.775 15 O -0.509 6.509 16 N -0.210 5.210 17 C -0.460 4.460 18 H 0.096 0.904 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.814 3.186 22 H -0.198 1.198 23 H -0.198 1.198 24 H -0.196 1.196 25 N -0.133 5.133 26 C -0.183 4.183 27 C -0.205 4.205 28 N -0.256 5.256 29 C -0.108 4.108 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.243 0.757 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.165 0.835 42 H 0.121 0.879 43 H 0.091 0.909 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.217 0.783 47 H 0.198 0.802 48 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.488 18.611 13.179 22.810 hybrid contribution 1.073 -0.759 -0.320 1.352 sum 1.560 17.852 12.859 22.057 Atomic orbital electron populations 1.22236 0.92588 1.03375 1.03913 1.21103 0.95972 0.96783 0.80812 0.86974 1.22004 1.04918 1.01190 0.90868 1.20465 0.78437 0.85124 0.84839 1.90697 1.41013 1.25841 1.86976 1.46027 1.57570 1.28137 1.05910 1.21550 1.00625 0.95467 0.82334 1.21866 0.98500 0.87473 0.95406 0.91406 1.21755 1.01708 1.00195 0.95996 1.60109 1.50779 1.01429 1.19223 1.21609 0.94857 0.89091 1.01229 1.20902 0.85807 0.87934 0.82892 1.90502 1.27801 1.84185 1.48435 1.41944 1.25480 1.07442 1.46177 1.19670 1.09783 0.85164 1.31415 0.90364 1.25993 0.95946 1.03663 0.95608 1.69671 1.17580 1.35693 1.33133 0.84914 0.78209 0.77255 0.78252 1.19811 1.19776 1.19639 1.45834 1.37683 1.11226 1.18598 1.23215 1.01538 1.02103 0.91455 1.22685 1.05519 0.89697 1.02579 1.70284 1.13678 1.29636 1.12040 1.25285 1.03620 0.86214 0.95677 0.91494 0.91903 0.89704 0.86554 0.86571 0.75682 0.89463 0.91755 0.92473 0.92757 0.90010 0.83550 0.87861 0.90937 0.76953 0.91342 0.78256 0.80225 0.76530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 8.98 71.98 0.65 -1.74 16 2 C 0.16 2.05 2.70 44.99 0.12 2.18 16 3 H 0.11 1.44 7.90 -2.39 -0.02 1.42 16 4 C -0.15 -1.80 5.18 29.85 0.15 -1.65 16 5 C 0.52 8.88 7.55 87.66 0.66 9.54 16 6 O -0.57 -12.86 13.97 -3.05 -0.04 -12.90 16 7 N -0.72 -11.53 4.99 -463.05 -2.31 -13.84 16 8 C 0.12 2.14 5.31 86.38 0.46 2.59 16 9 C 0.08 1.40 2.81 44.91 0.13 1.52 16 10 H 0.07 1.03 7.80 -2.39 -0.02 1.02 16 11 C -0.14 -2.40 9.41 71.98 0.68 -1.72 16 12 N -0.68 -18.11 5.92 -495.58 -2.94 -21.04 16 13 C 0.06 1.92 5.97 85.56 0.51 2.43 16 14 C 0.44 19.39 7.82 87.66 0.69 20.08 16 15 O -0.62 -32.69 15.78 -3.05 -0.05 -32.73 16 16 N -0.57 -27.99 5.29 -306.99 -1.62 -29.61 16 17 C -0.33 -18.20 9.68 84.04 0.81 -17.39 16 18 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 19 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 20 N -0.92 -48.34 13.05 21.66 0.28 -48.05 16 21 Si 0.99 42.06 29.55 68.60 2.03 44.08 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 N -0.45 -6.95 2.62 -506.54 -1.33 -8.27 16 26 C -0.05 -0.76 11.54 83.09 0.96 0.20 16 27 C -0.06 -1.12 11.87 83.52 0.99 -0.13 16 28 N -0.54 -12.92 11.25 -200.31 -2.25 -15.18 16 29 C 0.17 3.28 11.65 180.26 2.10 5.38 16 30 H 0.07 0.91 7.94 -2.39 -0.02 0.89 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.53 5.95 -2.38 -0.01 1.51 16 33 H 0.12 1.24 8.08 -2.39 -0.02 1.22 16 34 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.41 5.68 7.37 -92.71 -0.68 5.00 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.06 7.45 -2.39 -0.02 1.04 16 39 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.34 9.41 6.41 -89.69 -0.58 8.83 16 42 H 0.10 2.83 7.43 -2.39 -0.02 2.82 16 43 H 0.07 1.78 8.05 -2.39 -0.02 1.77 16 44 H 0.40 18.32 7.90 -92.71 -0.73 17.59 16 45 H 0.28 13.64 8.31 -92.70 -0.77 12.87 16 46 H 0.20 1.69 8.06 -2.91 -0.02 1.67 16 47 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 48 H 0.22 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -73.78 400.49 0.15 -73.63 By element: Atomic # 1 Polarization: 43.78 SS G_CDS: -0.99 Total: 42.79 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 9.37 Total: 21.13 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -10.17 Total: -136.00 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -0.09 Total: -45.63 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -73.78 0.15 -73.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731623775.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.908 kcal (2) G-P(sol) polarization free energy of solvation -73.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds