Wall clock time and date at job start Tue Mar 31 2020 19:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46662 * 2 1 4 4 C 1.52996 * 109.47336 * 119.99756 * 2 1 3 5 5 N 1.46498 * 109.47059 * 175.00083 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.52990 * 109.47398 * 180.02562 * 8 6 5 10 10 H 1.09006 * 109.46934 * 55.00277 * 9 8 6 11 11 C 1.52998 * 109.47540 * 294.99993 * 9 8 6 12 12 N 1.46501 * 109.47321 * 174.99946 * 9 8 6 13 13 C 1.36885 * 126.39806 * 239.72092 * 12 9 8 14 14 C 1.34675 * 106.81561 * 179.83965 * 13 12 9 15 15 N 1.34127 * 108.01910 * 0.42311 * 14 13 12 16 16 C 1.30501 * 109.25611 * 359.72666 * 15 14 13 17 17 N 1.46896 * 109.47313 * 240.00157 * 2 1 3 18 18 C 1.46899 * 111.00238 * 84.99700 * 17 2 1 19 19 C 1.50697 * 109.47690 * 179.97438 * 18 17 2 20 20 O 1.21297 * 119.99717 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00738 * 180.02562 * 19 18 17 22 22 C 1.37095 * 120.00382 * 180.02562 * 21 19 18 23 23 H 1.07993 * 120.00146 * 359.97438 * 22 21 19 24 24 C 1.38951 * 119.99965 * 180.02562 * 22 21 19 25 25 N 1.31414 * 120.00185 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99981 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47128 * 59.99701 * 26 24 22 28 28 H 1.48497 * 109.47039 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.47009 * 300.00006 * 26 24 22 30 30 H 1.09000 * 109.46662 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47064 * 300.00046 * 1 2 3 32 32 H 1.09001 * 109.47284 * 60.00249 * 1 2 3 33 33 H 1.09004 * 109.47066 * 55.00351 * 4 2 1 34 34 H 1.08994 * 109.46974 * 295.00498 * 4 2 1 35 35 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 36 36 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 37 37 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 38 38 H 1.09000 * 109.47350 * 179.97438 * 11 9 8 39 39 H 1.08992 * 109.47316 * 300.00015 * 11 9 8 40 40 H 1.09003 * 109.46745 * 60.00372 * 11 9 8 41 41 H 1.07996 * 126.58998 * 359.97261 * 13 12 9 42 42 H 1.07996 * 125.98852 * 180.11392 * 14 13 12 43 43 H 1.08006 * 125.64672 * 179.97438 * 16 15 14 44 44 H 1.00904 * 111.00249 * 208.94773 * 17 2 1 45 45 H 1.09000 * 109.47460 * 300.00234 * 18 17 2 46 46 H 1.09003 * 109.47468 * 59.99941 * 18 17 2 47 47 H 0.97004 * 119.99695 * 359.97438 * 21 19 18 48 48 H 0.96997 * 119.99921 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8262 1.1905 6 6 4.1736 -1.4236 2.1935 7 8 3.5706 -1.8787 3.1423 8 6 5.6760 -1.5262 2.1362 9 6 6.1864 -2.2430 3.3877 10 1 5.6882 -3.2079 3.4824 11 6 5.8858 -1.3905 4.6221 12 7 7.6327 -2.4490 3.2770 13 6 8.2853 -3.6521 3.2930 14 6 9.5987 -3.3846 3.1618 15 7 9.7448 -2.0540 3.0775 16 6 8.5713 -1.4870 3.1457 17 7 2.0197 -0.6924 -1.1994 18 6 2.0825 0.2226 -2.3469 19 6 2.5886 -0.5214 -3.5557 20 8 2.8690 -1.6984 -3.4700 21 7 2.7297 0.1209 -4.7321 22 6 3.1896 -0.5561 -5.8320 23 1 3.4393 -1.6040 -5.7556 24 6 3.3356 0.1063 -7.0447 25 7 3.0323 1.3815 -7.1375 26 14 3.9629 -0.8161 -8.5431 27 1 3.0413 -1.9378 -8.8556 28 1 4.0269 0.1092 -9.7028 29 1 5.3187 -1.3530 -8.2621 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6055 -1.7198 1.2952 34 1 1.7517 -0.1583 2.1369 35 1 3.9825 -0.4620 0.4319 36 1 5.9681 -2.0901 1.2503 37 1 6.1069 -0.5261 2.0886 38 1 6.2491 -1.9014 5.5138 39 1 6.3840 -0.4257 4.5275 40 1 4.8098 -1.2373 4.7046 41 1 7.8337 -4.6282 3.3899 42 1 10.3952 -4.1134 3.1346 43 1 8.3823 -0.4244 3.1046 44 1 2.9175 -1.1204 -1.0287 45 1 1.0871 0.6163 -2.5526 46 1 2.7588 1.0463 -2.1183 47 1 2.5051 1.0621 -4.8008 48 1 3.1346 1.8440 -7.9840 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731623777.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:09 Heat of formation + Delta-G solvation = -10.401635 kcal Electronic energy + Delta-G solvation = -28472.138635 eV Core-core repulsion = 24370.215124 eV Total energy + Delta-G solvation = -4101.923510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.34906 -40.29347 -38.56318 -37.26413 -35.91434 -34.28683 -33.85113 -31.55576 -31.28827 -30.87811 -29.50791 -28.71547 -26.74739 -25.93810 -24.06843 -23.57544 -21.61895 -21.10611 -20.80739 -20.21162 -19.38005 -18.06530 -17.92806 -17.18776 -16.43576 -16.33158 -15.90422 -15.53525 -15.37712 -15.34027 -14.72928 -14.54671 -14.23555 -14.08995 -13.97081 -13.80036 -13.56294 -13.53968 -13.26862 -12.91569 -12.83767 -12.62168 -12.20210 -11.99363 -11.95115 -11.84840 -11.75647 -11.69440 -11.49422 -11.11987 -10.96105 -10.48917 -10.27486 -10.26781 -10.17097 -9.88818 -9.56659 -9.41699 -8.74550 -8.57140 -8.23423 -8.03606 -6.48159 -3.89357 1.81387 2.22695 2.31124 2.93076 2.98327 3.15742 3.22269 3.26346 3.81393 3.94568 3.97541 4.19670 4.25557 4.35493 4.47412 4.53027 4.62974 4.71151 4.86982 4.92860 5.03808 5.07468 5.16442 5.19175 5.19996 5.30881 5.37484 5.40143 5.49650 5.57891 5.61509 5.67734 5.74102 5.86257 5.87962 6.01490 6.05671 6.15241 6.25305 6.51247 6.93112 7.02733 7.06070 7.45154 7.48977 7.79838 7.86058 7.98769 8.53454 9.10953 9.46374 9.97304 10.69286 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009637 B = 0.002314 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.893735 B =12097.656943 C =14474.924720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.049 0.951 4 C 0.118 3.882 5 N -0.727 5.727 6 C 0.524 3.476 7 O -0.538 6.538 8 C -0.157 4.157 9 C 0.150 3.850 10 H 0.110 0.890 11 C -0.167 4.167 12 N -0.455 5.455 13 C -0.054 4.054 14 C -0.032 4.032 15 N -0.496 5.496 16 C 0.181 3.819 17 N -0.664 5.664 18 C 0.049 3.951 19 C 0.437 3.563 20 O -0.584 6.584 21 N -0.561 5.561 22 C -0.301 4.301 23 H 0.103 0.897 24 C 0.024 3.976 25 N -0.901 5.901 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.402 0.598 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.173 0.827 42 H 0.168 0.832 43 H 0.200 0.800 44 H 0.346 0.654 45 H 0.088 0.912 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.640 -0.466 21.770 21.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.067 0.933 4 C -0.005 4.005 5 N -0.380 5.380 6 C 0.310 3.690 7 O -0.415 6.415 8 C -0.197 4.197 9 C 0.047 3.953 10 H 0.128 0.872 11 C -0.224 4.224 12 N -0.138 5.138 13 C -0.187 4.187 14 C -0.180 4.180 15 N -0.214 5.214 16 C -0.102 4.102 17 N -0.299 5.299 18 C -0.083 4.083 19 C 0.223 3.777 20 O -0.468 6.468 21 N -0.198 5.198 22 C -0.431 4.431 23 H 0.120 0.880 24 C -0.178 4.178 25 N -0.542 5.542 26 Si 0.758 3.242 27 H -0.198 1.198 28 H -0.209 1.209 29 H -0.199 1.199 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.237 0.763 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.190 0.810 42 H 0.186 0.814 43 H 0.217 0.783 44 H 0.168 0.832 45 H 0.107 0.893 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.380 -1.272 22.088 22.252 hybrid contribution 0.362 0.547 -1.122 1.300 sum 2.741 -0.725 20.966 21.157 Atomic orbital electron populations 1.21739 0.93280 1.03025 1.01637 1.21819 0.97252 0.95917 0.88954 0.93298 1.21648 0.78863 1.02224 0.97809 1.46046 1.08415 1.59918 1.23580 1.20152 0.89196 0.77464 0.82226 1.90700 1.70308 1.47480 1.33038 1.22040 0.93425 1.04049 1.00232 1.21128 0.76843 1.02136 0.95223 0.87188 1.22299 1.04933 0.99223 0.95965 1.45765 1.07563 1.07031 1.53411 1.22796 0.93995 0.90283 1.11593 1.22315 0.94967 0.92938 1.07793 1.70309 1.23990 1.07447 1.19645 1.24878 0.83315 0.96394 1.05582 1.60119 1.34736 1.32338 1.02713 1.21758 1.01551 0.93743 0.91268 1.19773 0.85249 0.88224 0.84471 1.90533 1.55463 1.16081 1.84735 1.41857 1.57499 1.12429 1.07967 1.19651 1.40190 0.96434 0.86826 0.87953 1.25270 0.97515 0.95775 0.99266 1.69598 1.48376 1.08842 1.27385 0.85915 0.79460 0.78871 0.79980 1.19839 1.20923 1.19856 0.91477 0.92449 0.91903 0.90126 0.90632 0.76331 0.87510 0.87811 0.91789 0.92125 0.88406 0.80953 0.81430 0.78302 0.83248 0.89348 0.93850 0.77455 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.42 37.16 0.35 -1.00 16 2 C 0.07 0.73 2.81 -67.71 -0.19 0.54 16 3 H 0.05 0.46 7.80 -51.93 -0.40 0.06 16 4 C 0.12 1.12 5.31 -4.04 -0.02 1.10 16 5 N -0.73 -6.44 4.99 -60.30 -0.30 -6.74 16 6 C 0.52 4.83 7.55 -10.98 -0.08 4.74 16 7 O -0.54 -6.39 13.96 5.55 0.08 -6.31 16 8 C -0.16 -1.09 5.17 -27.89 -0.14 -1.23 16 9 C 0.15 1.10 2.70 -67.94 -0.18 0.92 16 10 H 0.11 0.86 7.90 -51.93 -0.41 0.45 16 11 C -0.17 -1.16 8.98 37.16 0.33 -0.82 16 12 N -0.45 -3.86 2.62 -111.46 -0.29 -4.16 16 13 C -0.05 -0.47 11.54 -16.56 -0.19 -0.67 16 14 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 15 N -0.50 -5.97 11.25 -14.66 -0.16 -6.13 16 16 C 0.18 1.70 11.65 -90.38 -1.05 0.65 16 17 N -0.66 -9.44 5.93 -108.00 -0.64 -10.08 16 18 C 0.05 0.79 5.96 -4.98 -0.03 0.76 16 19 C 0.44 9.80 7.82 -10.99 -0.09 9.72 16 20 O -0.58 -15.23 15.78 5.54 0.09 -15.15 16 21 N -0.56 -13.69 5.29 -10.97 -0.06 -13.75 16 22 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 23 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 24 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -23.94 13.05 55.50 0.72 -23.22 16 26 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 29 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.65 7.45 -51.93 -0.39 0.27 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.40 3.22 7.37 -40.82 -0.30 2.91 16 36 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 0.53 8.08 -51.93 -0.42 0.11 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.36 7.95 -51.93 -0.41 -0.05 16 40 H 0.10 0.81 5.95 -51.93 -0.31 0.50 16 41 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 42 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.20 1.27 8.06 -52.48 -0.42 0.85 16 44 H 0.35 5.02 6.41 -39.29 -0.25 4.77 16 45 H 0.09 1.32 7.44 -51.93 -0.39 0.93 16 46 H 0.04 0.60 8.06 -51.93 -0.42 0.18 16 47 H 0.39 9.12 7.90 -40.82 -0.32 8.79 16 48 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -34.04 400.49 -8.64 -42.68 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -7.34 Total: 14.83 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -1.75 Total: 6.34 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: -0.73 Total: -64.08 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: 0.17 Total: -21.45 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.04 -8.64 -42.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731623777.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.277 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds