Wall clock time and date at job start Tue Mar 31 2020 19:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46662 * 2 1 4 4 C 1.52996 * 109.47336 * 119.99756 * 2 1 3 5 5 N 1.46498 * 109.47059 * 175.00083 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.52990 * 109.47398 * 180.02562 * 8 6 5 10 10 H 1.09006 * 109.46934 * 55.00277 * 9 8 6 11 11 C 1.52998 * 109.47540 * 294.99993 * 9 8 6 12 12 N 1.46501 * 109.47321 * 174.99946 * 9 8 6 13 13 C 1.36885 * 126.39806 * 239.72092 * 12 9 8 14 14 C 1.34675 * 106.81561 * 179.83965 * 13 12 9 15 15 N 1.34127 * 108.01910 * 0.42311 * 14 13 12 16 16 C 1.30501 * 109.25611 * 359.72666 * 15 14 13 17 17 N 1.46896 * 109.47313 * 240.00157 * 2 1 3 18 18 C 1.46899 * 111.00238 * 84.99700 * 17 2 1 19 19 C 1.50697 * 109.47690 * 179.97438 * 18 17 2 20 20 O 1.21297 * 119.99717 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00738 * 180.02562 * 19 18 17 22 22 C 1.37095 * 120.00382 * 180.02562 * 21 19 18 23 23 H 1.07993 * 120.00146 * 359.97438 * 22 21 19 24 24 C 1.38951 * 119.99965 * 180.02562 * 22 21 19 25 25 N 1.31414 * 120.00185 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99981 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47128 * 59.99701 * 26 24 22 28 28 H 1.48497 * 109.47039 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.47009 * 300.00006 * 26 24 22 30 30 H 1.09000 * 109.46662 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47064 * 300.00046 * 1 2 3 32 32 H 1.09001 * 109.47284 * 60.00249 * 1 2 3 33 33 H 1.09004 * 109.47066 * 55.00351 * 4 2 1 34 34 H 1.08994 * 109.46974 * 295.00498 * 4 2 1 35 35 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 36 36 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 37 37 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 38 38 H 1.09000 * 109.47350 * 179.97438 * 11 9 8 39 39 H 1.08992 * 109.47316 * 300.00015 * 11 9 8 40 40 H 1.09003 * 109.46745 * 60.00372 * 11 9 8 41 41 H 1.07996 * 126.58998 * 359.97261 * 13 12 9 42 42 H 1.07996 * 125.98852 * 180.11392 * 14 13 12 43 43 H 1.08006 * 125.64672 * 179.97438 * 16 15 14 44 44 H 1.00904 * 111.00249 * 208.94773 * 17 2 1 45 45 H 1.09000 * 109.47460 * 300.00234 * 18 17 2 46 46 H 1.09003 * 109.47468 * 59.99941 * 18 17 2 47 47 H 0.97004 * 119.99695 * 359.97438 * 21 19 18 48 48 H 0.96997 * 119.99921 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8262 1.1905 6 6 4.1736 -1.4236 2.1935 7 8 3.5706 -1.8787 3.1423 8 6 5.6760 -1.5262 2.1362 9 6 6.1864 -2.2430 3.3877 10 1 5.6882 -3.2079 3.4824 11 6 5.8858 -1.3905 4.6221 12 7 7.6327 -2.4490 3.2770 13 6 8.2853 -3.6521 3.2930 14 6 9.5987 -3.3846 3.1618 15 7 9.7448 -2.0540 3.0775 16 6 8.5713 -1.4870 3.1457 17 7 2.0197 -0.6924 -1.1994 18 6 2.0825 0.2226 -2.3469 19 6 2.5886 -0.5214 -3.5557 20 8 2.8690 -1.6984 -3.4700 21 7 2.7297 0.1209 -4.7321 22 6 3.1896 -0.5561 -5.8320 23 1 3.4393 -1.6040 -5.7556 24 6 3.3356 0.1063 -7.0447 25 7 3.0323 1.3815 -7.1375 26 14 3.9629 -0.8161 -8.5431 27 1 3.0413 -1.9378 -8.8556 28 1 4.0269 0.1092 -9.7028 29 1 5.3187 -1.3530 -8.2621 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6055 -1.7198 1.2952 34 1 1.7517 -0.1583 2.1369 35 1 3.9825 -0.4620 0.4319 36 1 5.9681 -2.0901 1.2503 37 1 6.1069 -0.5261 2.0886 38 1 6.2491 -1.9014 5.5138 39 1 6.3840 -0.4257 4.5275 40 1 4.8098 -1.2373 4.7046 41 1 7.8337 -4.6282 3.3899 42 1 10.3952 -4.1134 3.1346 43 1 8.3823 -0.4244 3.1046 44 1 2.9175 -1.1204 -1.0287 45 1 1.0871 0.6163 -2.5526 46 1 2.7588 1.0463 -2.1183 47 1 2.5051 1.0621 -4.8008 48 1 3.1346 1.8440 -7.9840 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731623777.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:08 Heat of formation + Delta-G solvation = -34.849123 kcal Electronic energy + Delta-G solvation = -28473.198757 eV Core-core repulsion = 24370.215124 eV Total energy + Delta-G solvation = -4102.983633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.03498 -41.05998 -40.17981 -38.35079 -36.62227 -35.97541 -34.99326 -33.28576 -32.32759 -31.78998 -30.19727 -29.33736 -28.13808 -26.90337 -25.65624 -24.26521 -22.32284 -21.81839 -21.65724 -21.15488 -20.85438 -19.92398 -18.67829 -18.16987 -17.47021 -17.19300 -16.89420 -16.72002 -16.49203 -16.23805 -16.07129 -15.71677 -15.55991 -15.11335 -14.86631 -14.71000 -14.52848 -14.34372 -14.15950 -13.93401 -13.71371 -13.60491 -13.48541 -13.29365 -12.93220 -12.82906 -12.79752 -12.57897 -12.53775 -12.42972 -12.27401 -12.13107 -11.87081 -11.50322 -11.03159 -10.92006 -10.60662 -10.34664 -10.17073 -10.01762 -9.44622 -9.37289 -8.47140 -5.95564 1.13884 1.39264 1.41971 1.51442 1.52139 1.65245 2.05229 2.23093 2.25229 2.28985 2.87273 3.20642 3.38711 3.48142 3.63110 3.70723 3.78234 3.87301 4.02739 4.12059 4.18200 4.26251 4.39348 4.39760 4.45474 4.49424 4.59099 4.60489 4.64726 4.71921 4.78001 4.84917 4.87183 4.93556 5.05830 5.15446 5.30217 5.38489 5.40684 5.46231 5.82858 5.87789 6.08632 6.27957 6.35396 6.36528 6.59815 7.09293 7.12590 7.15364 7.56518 8.11698 8.69814 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009637 B = 0.002314 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.893735 B =12097.656943 C =14474.924720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.077 3.923 3 H 0.070 0.930 4 C 0.124 3.876 5 N -0.724 5.724 6 C 0.524 3.476 7 O -0.566 6.566 8 C -0.149 4.149 9 C 0.154 3.846 10 H 0.104 0.896 11 C -0.160 4.160 12 N -0.452 5.452 13 C -0.055 4.055 14 C -0.057 4.057 15 N -0.538 5.538 16 C 0.178 3.822 17 N -0.681 5.681 18 C 0.065 3.935 19 C 0.436 3.564 20 O -0.624 6.624 21 N -0.572 5.572 22 C -0.334 4.334 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.989 3.011 27 H -0.273 1.273 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.407 0.593 36 H 0.106 0.894 37 H 0.127 0.873 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.195 0.805 42 H 0.179 0.821 43 H 0.226 0.774 44 H 0.343 0.657 45 H 0.104 0.896 46 H 0.074 0.926 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.424 0.741 22.261 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.032 4.032 3 H 0.088 0.912 4 C 0.000 4.000 5 N -0.376 5.376 6 C 0.311 3.689 7 O -0.446 6.446 8 C -0.189 4.189 9 C 0.051 3.949 10 H 0.122 0.878 11 C -0.217 4.217 12 N -0.134 5.134 13 C -0.188 4.188 14 C -0.204 4.204 15 N -0.256 5.256 16 C -0.104 4.104 17 N -0.316 5.316 18 C -0.067 4.067 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.209 5.209 22 C -0.463 4.463 23 H 0.096 0.904 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.813 3.187 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.197 1.197 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.243 0.757 36 H 0.124 0.876 37 H 0.145 0.855 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.212 0.788 42 H 0.196 0.804 43 H 0.243 0.757 44 H 0.164 0.836 45 H 0.122 0.878 46 H 0.091 0.909 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.149 -0.038 22.585 22.687 hybrid contribution 0.386 0.145 -1.201 1.270 sum 2.535 0.107 21.384 21.534 Atomic orbital electron populations 1.21756 0.92840 1.02462 1.02606 1.21870 0.97457 0.96545 0.87362 0.91248 1.21551 0.79183 1.01326 0.97917 1.46026 1.08226 1.59714 1.23664 1.20467 0.89987 0.76736 0.81684 1.90695 1.71055 1.48658 1.34152 1.22001 0.91765 1.05338 0.99843 1.21116 0.76071 1.02064 0.95676 0.87836 1.22215 1.04195 0.99761 0.95536 1.45828 1.07833 1.06849 1.52940 1.23181 0.93742 0.91292 1.10569 1.22646 0.96131 0.92883 1.08694 1.70274 1.25620 1.08452 1.21302 1.25386 0.82874 0.97556 1.04617 1.60105 1.34803 1.32973 1.03760 1.21607 1.02555 0.93679 0.88903 1.20919 0.83235 0.87990 0.85488 1.90504 1.56721 1.18233 1.85624 1.41925 1.58185 1.12604 1.08222 1.19600 1.42170 0.95914 0.88648 0.90402 1.25991 0.97243 0.96589 1.01283 1.69653 1.48521 1.09594 1.28214 0.85039 0.78745 0.77862 0.77026 1.19880 1.19538 1.19669 0.92849 0.89940 0.92467 0.91963 0.89278 0.75670 0.87602 0.85456 0.92133 0.90754 0.89538 0.78813 0.80408 0.75730 0.83619 0.87823 0.90855 0.76921 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.42 71.98 0.68 -1.72 16 2 C 0.08 1.39 2.81 44.92 0.13 1.52 16 3 H 0.07 1.04 7.80 -2.39 -0.02 1.02 16 4 C 0.12 2.13 5.31 86.38 0.46 2.59 16 5 N -0.72 -11.51 4.99 -463.07 -2.31 -13.82 16 6 C 0.52 8.88 7.55 87.66 0.66 9.54 16 7 O -0.57 -12.90 13.96 -3.04 -0.04 -12.94 16 8 C -0.15 -1.79 5.17 29.85 0.15 -1.64 16 9 C 0.15 2.04 2.70 44.99 0.12 2.16 16 10 H 0.10 1.53 7.90 -2.38 -0.02 1.51 16 11 C -0.16 -1.97 8.98 71.98 0.65 -1.32 16 12 N -0.45 -7.08 2.62 -506.55 -1.33 -8.40 16 13 C -0.05 -0.92 11.54 83.09 0.96 0.04 16 14 C -0.06 -1.15 11.87 83.52 0.99 -0.16 16 15 N -0.54 -12.71 11.25 -200.31 -2.25 -14.96 16 16 C 0.18 3.11 11.65 180.26 2.10 5.21 16 17 N -0.68 -18.28 5.93 -495.59 -2.94 -21.22 16 18 C 0.06 1.94 5.96 85.56 0.51 2.45 16 19 C 0.44 19.46 7.82 87.66 0.69 20.14 16 20 O -0.62 -33.03 15.78 -3.08 -0.05 -33.08 16 21 N -0.57 -28.03 5.29 -307.00 -1.62 -29.66 16 22 C -0.33 -18.43 9.68 84.04 0.81 -17.62 16 23 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 24 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 25 N -0.92 -48.33 13.05 21.66 0.28 -48.05 16 26 Si 0.99 42.10 29.55 68.60 2.03 44.13 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 29 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.06 7.45 -2.39 -0.02 1.04 16 33 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.41 5.66 7.37 -92.71 -0.68 4.98 16 36 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.13 0.94 8.08 -2.39 -0.02 0.92 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.70 7.95 -2.39 -0.02 0.69 16 40 H 0.09 1.33 5.95 -2.39 -0.01 1.32 16 41 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 42 H 0.18 2.90 8.06 -2.91 -0.02 2.88 16 43 H 0.23 2.36 8.06 -2.91 -0.02 2.34 16 44 H 0.34 9.54 6.41 -89.69 -0.58 8.96 16 45 H 0.10 2.85 7.44 -2.39 -0.02 2.83 16 46 H 0.07 1.80 8.06 -2.39 -0.02 1.78 16 47 H 0.40 18.36 7.90 -92.71 -0.73 17.63 16 48 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -74.42 400.49 0.15 -74.27 By element: Atomic # 1 Polarization: 43.62 SS G_CDS: -0.99 Total: 42.63 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 9.37 Total: 21.09 kcal Atomic # 7 Polarization: -125.93 SS G_CDS: -10.17 Total: -136.10 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -0.09 Total: -46.02 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -74.42 0.15 -74.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731623777.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.422 kcal (2) G-P(sol) polarization free energy of solvation -74.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds