Wall clock time and date at job start Tue Mar 31 2020 19:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47355 * 2 1 4 4 C 1.53001 * 109.47372 * 239.99405 * 2 1 3 5 5 N 1.46493 * 109.47084 * 184.99895 * 4 2 1 6 6 C 1.34784 * 119.99864 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99649 * 359.72839 * 6 5 4 8 8 C 1.50694 * 119.99988 * 179.72721 * 6 5 4 9 9 C 1.53001 * 109.47168 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47151 * 305.00083 * 9 8 6 11 11 C 1.53007 * 109.46991 * 64.99889 * 9 8 6 12 12 N 1.46495 * 109.47360 * 185.00076 * 9 8 6 13 13 C 1.36882 * 126.39830 * 120.00005 * 12 9 8 14 14 C 1.34670 * 106.81772 * 180.02562 * 13 12 9 15 15 N 1.34128 * 108.02151 * 0.02562 * 14 13 12 16 16 C 1.30502 * 109.25776 * 359.72494 * 15 14 13 17 17 N 1.46901 * 109.46855 * 119.99779 * 2 1 3 18 18 C 1.46901 * 111.00186 * 274.99710 * 17 2 1 19 19 C 1.50694 * 109.47254 * 180.02562 * 18 17 2 20 20 O 1.21293 * 120.00296 * 0.02562 * 19 18 17 21 21 N 1.34781 * 119.99804 * 180.02562 * 19 18 17 22 22 C 1.37099 * 119.99960 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99995 * 0.02562 * 22 21 19 24 24 C 1.38943 * 119.99948 * 180.02562 * 22 21 19 25 25 N 1.31410 * 120.00581 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99986 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46976 * 60.00313 * 26 24 22 28 28 H 1.48497 * 109.47166 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47049 * 300.00096 * 26 24 22 30 30 H 1.09008 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47299 * 300.00115 * 1 2 3 32 32 H 1.09000 * 109.47212 * 60.00604 * 1 2 3 33 33 H 1.09007 * 109.46593 * 65.00152 * 4 2 1 34 34 H 1.09006 * 109.47216 * 305.00611 * 4 2 1 35 35 H 0.97000 * 120.00740 * 359.72857 * 5 4 2 36 36 H 1.08998 * 109.47224 * 299.99701 * 8 6 5 37 37 H 1.09002 * 109.47054 * 60.00213 * 8 6 5 38 38 H 1.08995 * 109.47091 * 180.02562 * 11 9 8 39 39 H 1.08996 * 109.46891 * 300.00019 * 11 9 8 40 40 H 1.09000 * 109.47014 * 60.00110 * 11 9 8 41 41 H 1.07995 * 126.59437 * 0.03506 * 13 12 9 42 42 H 1.07998 * 125.99230 * 180.02562 * 14 13 12 43 43 H 1.07999 * 125.65698 * 180.29537 * 16 15 14 44 44 H 1.00900 * 111.00229 * 151.04805 * 17 2 1 45 45 H 1.09002 * 109.47444 * 300.00593 * 18 17 2 46 46 H 1.09008 * 109.46776 * 60.00094 * 18 17 2 47 47 H 0.97002 * 120.00005 * 0.02562 * 21 19 18 48 48 H 0.96995 * 120.00957 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5000 -0.8264 -1.1904 6 6 4.1731 -1.4284 -2.1910 7 8 3.5696 -1.8875 -3.1376 8 6 5.6755 -1.5311 -2.1336 9 6 6.1854 -2.2536 -3.3821 10 1 5.6870 -3.2188 -3.4724 11 6 5.8846 -1.4065 -4.6202 12 7 7.6316 -2.4594 -3.2708 13 6 8.2835 -3.6630 -3.2763 14 6 9.5974 -3.3950 -3.1518 15 7 9.7437 -2.0641 -3.0719 16 6 8.5709 -1.4969 -3.1480 17 7 2.0196 -0.6925 1.1995 18 6 2.0824 0.2227 2.3469 19 6 2.5884 -0.5214 3.5557 20 8 2.8695 -1.6982 3.4699 21 7 2.7285 0.1208 4.7324 22 6 3.1884 -0.5562 5.8323 23 1 3.4387 -1.6040 5.7558 24 6 3.3323 0.1057 7.0455 25 7 3.0273 1.3805 7.1388 26 14 3.9595 -0.8166 8.5440 27 1 5.3162 -1.3515 8.2640 28 1 4.0213 0.1080 9.7043 29 1 3.0391 -1.9397 8.8551 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.7516 -0.1584 -2.1369 34 1 1.6053 -1.7200 -1.2951 35 1 3.9828 -0.4590 -0.4336 36 1 6.1066 -0.5309 -2.0907 37 1 5.9677 -2.0912 -1.2453 38 1 6.2474 -1.9214 -5.5097 39 1 4.8086 -1.2534 -4.7030 40 1 6.3830 -0.4413 -4.5299 41 1 7.8312 -4.6398 -3.3638 42 1 10.3937 -4.1239 -3.1216 43 1 8.3824 -0.4339 -3.1160 44 1 2.9172 -1.1205 1.0289 45 1 2.7588 1.0463 2.1182 46 1 1.0869 0.6164 2.5525 47 1 2.5034 1.0618 4.8012 48 1 3.1275 1.8425 7.9857 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731623779.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:11 Heat of formation + Delta-G solvation = -34.886479 kcal Electronic energy + Delta-G solvation = -28474.069603 eV Core-core repulsion = 24371.084350 eV Total energy + Delta-G solvation = -4102.985253 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.03431 -41.05959 -40.17983 -38.35004 -36.62176 -35.97603 -34.99322 -33.28608 -32.32727 -31.78977 -30.19830 -29.33626 -28.13779 -26.90276 -25.65605 -24.26581 -22.32141 -21.81810 -21.65782 -21.15465 -20.85493 -19.92378 -18.67844 -18.16965 -17.46970 -17.19322 -16.89343 -16.72155 -16.49170 -16.23716 -16.07013 -15.71768 -15.56028 -15.11352 -14.86659 -14.71177 -14.52759 -14.34403 -14.16001 -13.93361 -13.71371 -13.60296 -13.48526 -13.29395 -12.93281 -12.82882 -12.79790 -12.57893 -12.53753 -12.42995 -12.27409 -12.13136 -11.87005 -11.50371 -11.03360 -10.91840 -10.60682 -10.34729 -10.17029 -10.01777 -9.44632 -9.37294 -8.47085 -5.95577 1.13848 1.39268 1.41959 1.51423 1.52107 1.65309 2.05204 2.23297 2.25059 2.28963 2.87283 3.20654 3.38745 3.48154 3.63115 3.70676 3.78246 3.87288 4.02773 4.12087 4.18198 4.26254 4.39370 4.39743 4.45474 4.49427 4.59113 4.60433 4.64696 4.71951 4.78012 4.84922 4.87184 4.93514 5.05849 5.15486 5.30246 5.38508 5.40646 5.46234 5.82856 5.87796 6.08624 6.27964 6.35403 6.36546 6.59820 7.09310 7.12583 7.15352 7.56501 8.11671 8.69862 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009634 B = 0.002315 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.598969 B =12092.672831 C =14470.988825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.077 3.923 3 H 0.070 0.930 4 C 0.124 3.876 5 N -0.724 5.724 6 C 0.524 3.476 7 O -0.566 6.566 8 C -0.149 4.149 9 C 0.154 3.846 10 H 0.103 0.897 11 C -0.159 4.159 12 N -0.452 5.452 13 C -0.055 4.055 14 C -0.057 4.057 15 N -0.538 5.538 16 C 0.178 3.822 17 N -0.681 5.681 18 C 0.065 3.935 19 C 0.436 3.564 20 O -0.624 6.624 21 N -0.572 5.572 22 C -0.334 4.334 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.989 3.011 27 H -0.271 1.271 28 H -0.271 1.271 29 H -0.273 1.273 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.407 0.593 36 H 0.127 0.873 37 H 0.106 0.894 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.195 0.805 42 H 0.179 0.821 43 H 0.227 0.773 44 H 0.343 0.657 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.433 0.740 -22.273 22.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.032 4.032 3 H 0.088 0.912 4 C 0.000 4.000 5 N -0.376 5.376 6 C 0.311 3.689 7 O -0.446 6.446 8 C -0.189 4.189 9 C 0.051 3.949 10 H 0.122 0.878 11 C -0.217 4.217 12 N -0.135 5.135 13 C -0.188 4.188 14 C -0.204 4.204 15 N -0.256 5.256 16 C -0.104 4.104 17 N -0.316 5.316 18 C -0.067 4.067 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.209 5.209 22 C -0.463 4.463 23 H 0.096 0.904 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.813 3.187 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.199 1.199 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.243 0.757 36 H 0.145 0.855 37 H 0.124 0.876 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.212 0.788 42 H 0.196 0.804 43 H 0.243 0.757 44 H 0.164 0.836 45 H 0.091 0.909 46 H 0.122 0.878 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.158 -0.041 -22.593 22.696 hybrid contribution 0.385 0.144 1.206 1.274 sum 2.542 0.103 -21.388 21.538 Atomic orbital electron populations 1.21756 0.92842 1.02460 1.02606 1.21870 0.97456 0.96545 0.87363 0.91243 1.21553 0.79185 1.01326 0.97914 1.46026 1.08226 1.59468 1.23912 1.20468 0.89989 0.76762 0.81655 1.90695 1.71025 1.48607 1.34229 1.22003 0.91766 1.05302 0.99878 1.21118 0.76076 1.02051 0.95687 0.87841 1.22216 1.04196 0.99805 0.95485 1.45829 1.07826 1.06799 1.53001 1.23178 0.93737 0.91280 1.10584 1.22645 0.96115 0.92879 1.08718 1.70274 1.25658 1.08453 1.21259 1.25389 0.82880 0.97546 1.04613 1.60108 1.34813 1.32963 1.03762 1.21609 1.02555 0.93681 0.88905 1.20920 0.83231 0.87986 0.85488 1.90503 1.56697 1.18247 1.85628 1.41929 1.58191 1.12620 1.08209 1.19600 1.42170 0.95936 0.88625 0.90404 1.25986 0.97241 0.96588 1.01280 1.69648 1.48517 1.09638 1.28186 0.85040 0.78746 0.77863 0.77030 1.19670 1.19538 1.19883 0.92852 0.92467 0.89938 0.89280 0.91962 0.75670 0.85456 0.87612 0.92127 0.89539 0.90744 0.78817 0.80409 0.75726 0.83619 0.90851 0.87824 0.76921 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.41 71.98 0.68 -1.72 16 2 C 0.08 1.39 2.81 44.91 0.13 1.52 16 3 H 0.07 1.04 7.80 -2.39 -0.02 1.02 16 4 C 0.12 2.13 5.31 86.38 0.46 2.59 16 5 N -0.72 -11.51 4.98 -463.05 -2.31 -13.82 16 6 C 0.52 8.88 7.55 87.65 0.66 9.54 16 7 O -0.57 -12.90 13.96 -3.04 -0.04 -12.95 16 8 C -0.15 -1.79 5.18 29.85 0.15 -1.64 16 9 C 0.15 2.04 2.70 44.99 0.12 2.16 16 10 H 0.10 1.53 7.90 -2.39 -0.02 1.51 16 11 C -0.16 -1.97 8.98 71.98 0.65 -1.32 16 12 N -0.45 -7.08 2.62 -506.54 -1.33 -8.40 16 13 C -0.05 -0.92 11.54 83.09 0.96 0.04 16 14 C -0.06 -1.15 11.87 83.52 0.99 -0.16 16 15 N -0.54 -12.70 11.25 -200.30 -2.25 -14.96 16 16 C 0.18 3.11 11.65 180.26 2.10 5.21 16 17 N -0.68 -18.29 5.93 -495.57 -2.94 -21.23 16 18 C 0.06 1.94 5.96 85.55 0.51 2.45 16 19 C 0.44 19.47 7.82 87.65 0.69 20.15 16 20 O -0.62 -33.03 15.78 -3.07 -0.05 -33.08 16 21 N -0.57 -28.04 5.29 -306.99 -1.62 -29.66 16 22 C -0.33 -18.44 9.68 84.04 0.81 -17.62 16 23 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 24 C -0.01 -0.57 5.50 84.92 0.47 -0.10 16 25 N -0.92 -48.34 13.05 21.66 0.28 -48.06 16 26 Si 0.99 42.10 29.55 68.60 2.03 44.13 16 27 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 28 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 29 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 30 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.06 1.06 7.45 -2.39 -0.02 1.04 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.41 5.66 7.38 -92.71 -0.68 4.97 16 36 H 0.13 0.94 8.08 -2.39 -0.02 0.92 16 37 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.09 1.33 5.95 -2.39 -0.01 1.31 16 40 H 0.07 0.70 7.94 -2.39 -0.02 0.68 16 41 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 42 H 0.18 2.91 8.06 -2.91 -0.02 2.88 16 43 H 0.23 2.36 8.06 -2.91 -0.02 2.33 16 44 H 0.34 9.55 6.42 -89.69 -0.58 8.97 16 45 H 0.07 1.80 8.06 -2.39 -0.02 1.78 16 46 H 0.10 2.85 7.44 -2.38 -0.02 2.83 16 47 H 0.40 18.36 7.90 -92.71 -0.73 17.63 16 48 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -74.44 400.50 0.15 -74.28 By element: Atomic # 1 Polarization: 43.63 SS G_CDS: -0.99 Total: 42.64 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 9.37 Total: 21.11 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -10.16 Total: -136.13 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -0.09 Total: -46.03 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -74.44 0.15 -74.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731623779.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.397 kcal (2) G-P(sol) polarization free energy of solvation -74.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds