Wall clock time and date at job start Tue Mar 31 2020 20:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46688 * 2 1 4 4 C 1.34260 * 125.75083 * 125.00144 * 3 2 1 5 5 C 1.38044 * 107.41552 * 179.97438 * 4 3 2 6 6 C 1.47425 * 126.41419 * 179.97438 * 5 4 3 7 7 O 1.21609 * 119.99732 * 180.02562 * 6 5 4 8 8 N 1.34776 * 120.00096 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99830 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46998 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.47134 * 295.00308 * 10 9 8 12 12 C 1.53008 * 109.47248 * 174.99958 * 10 9 8 13 13 N 1.46902 * 109.47057 * 55.00102 * 10 9 8 14 14 C 1.46899 * 111.00133 * 204.99836 * 13 10 9 15 15 C 1.50697 * 109.47323 * 180.02562 * 14 13 10 16 16 O 1.21294 * 119.99713 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00401 * 180.02562 * 15 14 13 18 18 C 1.37102 * 120.00532 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99787 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00206 * 180.02562 * 18 17 15 21 21 N 1.31418 * 120.00033 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00089 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46911 * 89.99742 * 22 20 18 24 24 H 1.48497 * 109.47399 * 209.99981 * 22 20 18 25 25 H 1.48502 * 109.47092 * 330.00128 * 22 20 18 26 26 C 1.41297 * 107.16972 * 0.02562 * 5 4 3 27 27 C 1.50699 * 125.98575 * 179.97438 * 26 5 4 28 28 N 1.30446 * 108.02198 * 359.74012 * 26 5 4 29 29 H 1.08999 * 109.47230 * 299.99915 * 1 2 3 30 30 H 1.09000 * 109.47236 * 60.00319 * 1 2 3 31 31 H 1.09002 * 109.46820 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47230 * 240.00085 * 2 1 3 33 33 H 1.09000 * 109.47236 * 119.99680 * 2 1 3 34 34 H 1.08001 * 126.29385 * 359.95473 * 4 3 2 35 35 H 0.96993 * 120.00074 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.47570 * 299.99865 * 9 8 6 37 37 H 1.09001 * 109.47231 * 60.00462 * 9 8 6 38 38 H 1.09000 * 109.46739 * 59.99882 * 12 10 9 39 39 H 1.09000 * 109.46993 * 180.02562 * 12 10 9 40 40 H 1.08997 * 109.46613 * 300.00319 * 12 10 9 41 41 H 1.00904 * 111.00159 * 81.04743 * 13 10 9 42 42 H 1.09002 * 109.47199 * 299.99818 * 14 13 10 43 43 H 1.08996 * 109.46739 * 60.00102 * 14 13 10 44 44 H 0.97004 * 120.00191 * 0.02562 * 17 15 14 45 45 H 0.96999 * 119.99424 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.46969 * 90.00099 * 27 26 5 47 47 H 1.09002 * 109.46867 * 210.00000 * 27 26 5 48 48 H 1.09004 * 109.47352 * 330.00133 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8689 1.9126 0.8925 5 6 3.0712 3.2309 0.5365 6 6 3.9324 4.2034 1.2336 7 8 4.0251 5.3420 0.8165 8 7 4.6168 3.8307 2.3333 9 6 5.4729 4.7971 3.0257 10 6 6.1296 4.1237 4.2324 11 1 5.3628 3.8473 4.9561 12 6 7.1183 5.0938 4.8824 13 7 6.8442 2.9183 3.7917 14 6 6.9734 1.9517 4.8903 15 6 7.7105 0.7314 4.4018 16 8 8.0913 0.6730 3.2516 17 7 7.9467 -0.2949 5.2427 18 6 8.6169 -1.4053 4.7981 19 1 8.9552 -1.4576 3.7738 20 6 8.8599 -2.4636 5.6650 21 7 8.4469 -2.4005 6.9110 22 14 9.7724 -3.9767 5.0590 23 1 11.2306 -3.7932 5.2709 24 1 9.3089 -5.1693 5.8128 25 1 9.5030 -4.1705 3.6115 26 6 2.2975 3.4739 -0.6206 27 6 2.2055 4.7804 -1.3660 28 7 1.6807 2.3678 -0.9332 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3131 1.4025 1.7345 35 1 4.5431 2.9226 2.6657 36 1 6.2447 5.1532 2.3433 37 1 4.8700 5.6398 3.3639 38 1 6.5880 5.9882 5.2093 39 1 7.5865 4.6139 5.7418 40 1 7.8850 5.3702 4.1586 41 1 7.7477 3.1532 3.4088 42 1 7.5282 2.4064 5.7111 43 1 5.9818 1.6625 5.2382 44 1 7.6419 -0.2484 6.1624 45 1 8.6169 -3.1392 7.5162 46 1 2.9769 4.8148 -2.1354 47 1 1.2237 4.8645 -1.8319 48 1 2.3494 5.6068 -0.6700 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731624923.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:50 Heat of formation + Delta-G solvation = -7.194559 kcal Electronic energy + Delta-G solvation = -28814.816676 eV Core-core repulsion = 24713.032235 eV Total energy + Delta-G solvation = -4101.784441 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.49873 -39.19946 -38.39813 -36.86790 -34.96234 -34.13462 -33.73480 -31.65417 -31.33708 -30.87091 -29.96645 -27.91491 -26.51220 -26.04905 -24.04174 -23.66960 -22.22493 -21.04807 -20.26923 -19.56327 -19.30858 -17.98701 -17.67171 -16.32477 -16.18668 -15.93022 -15.75192 -15.32784 -15.07504 -14.67086 -14.57441 -14.30411 -14.12038 -13.99158 -13.78414 -13.33471 -13.20871 -13.11175 -12.94669 -12.57310 -12.54549 -12.43630 -12.25646 -12.22385 -12.01044 -11.72536 -11.66904 -11.62662 -11.43447 -11.09986 -10.98155 -10.85972 -10.44842 -10.27956 -9.71048 -9.57201 -9.43707 -8.96615 -8.60453 -8.54979 -8.15226 -8.02616 -6.48236 -3.89215 1.46037 2.14734 2.19617 3.12693 3.22000 3.27381 3.39596 3.58419 3.83805 4.02304 4.14657 4.26524 4.52621 4.60718 4.69420 4.79694 4.88937 4.94601 5.04493 5.09828 5.16978 5.23980 5.28060 5.33158 5.41137 5.43258 5.51787 5.63644 5.66679 5.69152 5.72921 5.78119 5.87230 5.89632 5.95597 5.99028 6.05081 6.20260 6.49312 6.60787 6.71792 7.11502 7.49017 7.50049 7.56316 7.78370 7.99728 8.46142 8.54366 9.11599 9.47579 9.98815 10.69371 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009246 B = 0.002782 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.701265 B =10062.024129 C =12459.311228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.124 3.876 3 N -0.358 5.358 4 C 0.106 3.894 5 C -0.289 4.289 6 C 0.594 3.406 7 O -0.554 6.554 8 N -0.712 5.712 9 C 0.137 3.863 10 C 0.068 3.932 11 H 0.083 0.917 12 C -0.181 4.181 13 N -0.664 5.664 14 C 0.049 3.951 15 C 0.439 3.561 16 O -0.582 6.582 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.269 1.269 26 C 0.129 3.871 27 C -0.075 4.075 28 N -0.304 5.304 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.184 0.816 35 H 0.405 0.595 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.354 0.646 42 H 0.045 0.955 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.078 0.922 47 H 0.068 0.932 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.962 9.789 -5.757 17.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.004 3.996 3 N -0.136 5.136 4 C -0.045 4.045 5 C -0.304 4.304 6 C 0.381 3.619 7 O -0.434 6.434 8 N -0.362 5.362 9 C 0.012 3.988 10 C -0.043 4.043 11 H 0.101 0.899 12 C -0.240 4.240 13 N -0.296 5.296 14 C -0.083 4.083 15 C 0.224 3.776 16 O -0.466 6.466 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.039 4.039 27 C -0.133 4.133 28 N -0.126 5.126 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.201 0.799 35 H 0.240 0.760 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.174 0.826 42 H 0.063 0.937 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.030 9.366 -7.747 19.330 hybrid contribution 1.627 -0.734 1.876 2.589 sum -13.404 8.632 -5.871 16.990 Atomic orbital electron populations 1.22047 0.93497 1.03055 1.03614 1.21860 0.96314 0.76888 1.04578 1.48503 1.34329 1.10513 1.20213 1.23214 0.92419 0.93810 0.95092 1.20234 1.11805 0.94529 1.03846 1.17213 0.78659 0.86482 0.79500 1.90706 1.65940 1.20225 1.66518 1.45613 1.46549 1.15554 1.28522 1.21284 0.93255 0.90964 0.93258 1.21866 0.96631 0.90310 0.95512 0.89860 1.22432 0.99980 1.00125 1.01479 1.60191 1.26861 1.11021 1.31565 1.21720 1.00732 0.93199 0.92689 1.19817 0.85616 0.85128 0.86993 1.90541 1.56127 1.81475 1.18493 1.41873 1.50485 1.15250 1.12406 1.19693 1.31646 0.93278 0.98308 0.87946 1.25258 0.98007 0.99491 0.95130 1.69611 1.46661 1.33517 1.04499 0.85871 0.79362 0.80271 0.78884 1.20393 1.20908 1.19400 1.22440 0.92946 0.94967 0.93499 1.20311 1.02252 0.90921 0.99858 1.77107 1.25195 0.96739 1.13509 0.92012 0.91047 0.90469 0.89245 0.87976 0.79891 0.75958 0.91560 0.91424 0.91829 0.92008 0.91959 0.82610 0.93708 0.89709 0.77493 0.91843 0.90372 0.91352 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 10.09 37.16 0.38 -0.74 16 2 C 0.12 0.95 7.21 -4.04 -0.03 0.92 16 3 N -0.36 -4.01 3.65 -60.80 -0.22 -4.24 16 4 C 0.11 1.20 10.95 -16.56 -0.18 1.02 16 5 C -0.29 -3.88 6.13 -105.07 -0.64 -4.53 16 6 C 0.59 8.53 7.81 -12.52 -0.10 8.43 16 7 O -0.55 -9.27 14.92 5.27 0.08 -9.19 16 8 N -0.71 -8.82 5.38 -61.38 -0.33 -9.15 16 9 C 0.14 1.57 5.37 -4.04 -0.02 1.55 16 10 C 0.07 0.72 2.75 -67.71 -0.19 0.53 16 11 H 0.08 0.82 7.80 -51.93 -0.40 0.41 16 12 C -0.18 -1.69 9.16 37.16 0.34 -1.35 16 13 N -0.66 -9.28 5.31 -107.99 -0.57 -9.85 16 14 C 0.05 0.76 5.97 -4.98 -0.03 0.74 16 15 C 0.44 9.63 7.82 -10.99 -0.09 9.54 16 16 O -0.58 -14.95 15.78 5.55 0.09 -14.86 16 17 N -0.56 -13.52 5.29 -10.97 -0.06 -13.58 16 18 C -0.30 -8.05 9.68 -14.93 -0.14 -8.20 16 19 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -23.76 13.05 55.50 0.72 -23.03 16 22 Si 0.93 20.46 29.55 -169.99 -5.02 15.43 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 C 0.13 1.74 7.26 -82.02 -0.60 1.15 16 27 C -0.07 -0.85 9.92 36.01 0.36 -0.50 16 28 N -0.30 -4.04 12.34 33.90 0.42 -3.63 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.58 8.06 -51.93 -0.42 0.16 16 34 H 0.18 1.57 7.46 -52.49 -0.39 1.18 16 35 H 0.41 4.71 7.06 -40.82 -0.29 4.42 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 40 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 41 H 0.35 5.43 8.17 -39.29 -0.32 5.11 16 42 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 43 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 44 H 0.39 8.99 7.90 -40.82 -0.32 8.67 16 45 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 46 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.09 1.16 6.55 -51.93 -0.34 0.82 16 LS Contribution 405.01 15.07 6.10 6.10 Total: -1.00 -33.65 405.01 -7.25 -40.90 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -7.42 Total: 16.04 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -1.04 Total: 9.06 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: -0.04 Total: -63.48 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: 0.17 Total: -24.06 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.65 -7.25 -40.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731624923.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.702 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds