Wall clock time and date at job start Tue Mar 31 2020 20:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46688 * 2 1 4 4 C 1.34260 * 125.75083 * 125.00144 * 3 2 1 5 5 C 1.38044 * 107.41552 * 179.97438 * 4 3 2 6 6 C 1.47425 * 126.41419 * 179.97438 * 5 4 3 7 7 O 1.21609 * 119.99732 * 180.02562 * 6 5 4 8 8 N 1.34776 * 120.00096 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99830 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46998 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.47134 * 295.00308 * 10 9 8 12 12 C 1.53008 * 109.47248 * 174.99958 * 10 9 8 13 13 N 1.46902 * 109.47057 * 55.00102 * 10 9 8 14 14 C 1.46899 * 111.00133 * 204.99836 * 13 10 9 15 15 C 1.50697 * 109.47323 * 180.02562 * 14 13 10 16 16 O 1.21294 * 119.99713 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00401 * 180.02562 * 15 14 13 18 18 C 1.37102 * 120.00532 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99787 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00206 * 180.02562 * 18 17 15 21 21 N 1.31418 * 120.00033 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00089 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46911 * 89.99742 * 22 20 18 24 24 H 1.48497 * 109.47399 * 209.99981 * 22 20 18 25 25 H 1.48502 * 109.47092 * 330.00128 * 22 20 18 26 26 C 1.41297 * 107.16972 * 0.02562 * 5 4 3 27 27 C 1.50699 * 125.98575 * 179.97438 * 26 5 4 28 28 N 1.30446 * 108.02198 * 359.74012 * 26 5 4 29 29 H 1.08999 * 109.47230 * 299.99915 * 1 2 3 30 30 H 1.09000 * 109.47236 * 60.00319 * 1 2 3 31 31 H 1.09002 * 109.46820 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47230 * 240.00085 * 2 1 3 33 33 H 1.09000 * 109.47236 * 119.99680 * 2 1 3 34 34 H 1.08001 * 126.29385 * 359.95473 * 4 3 2 35 35 H 0.96993 * 120.00074 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.47570 * 299.99865 * 9 8 6 37 37 H 1.09001 * 109.47231 * 60.00462 * 9 8 6 38 38 H 1.09000 * 109.46739 * 59.99882 * 12 10 9 39 39 H 1.09000 * 109.46993 * 180.02562 * 12 10 9 40 40 H 1.08997 * 109.46613 * 300.00319 * 12 10 9 41 41 H 1.00904 * 111.00159 * 81.04743 * 13 10 9 42 42 H 1.09002 * 109.47199 * 299.99818 * 14 13 10 43 43 H 1.08996 * 109.46739 * 60.00102 * 14 13 10 44 44 H 0.97004 * 120.00191 * 0.02562 * 17 15 14 45 45 H 0.96999 * 119.99424 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.46969 * 90.00099 * 27 26 5 47 47 H 1.09002 * 109.46867 * 210.00000 * 27 26 5 48 48 H 1.09004 * 109.47352 * 330.00133 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8689 1.9126 0.8925 5 6 3.0712 3.2309 0.5365 6 6 3.9324 4.2034 1.2336 7 8 4.0251 5.3420 0.8165 8 7 4.6168 3.8307 2.3333 9 6 5.4729 4.7971 3.0257 10 6 6.1296 4.1237 4.2324 11 1 5.3628 3.8473 4.9561 12 6 7.1183 5.0938 4.8824 13 7 6.8442 2.9183 3.7917 14 6 6.9734 1.9517 4.8903 15 6 7.7105 0.7314 4.4018 16 8 8.0913 0.6730 3.2516 17 7 7.9467 -0.2949 5.2427 18 6 8.6169 -1.4053 4.7981 19 1 8.9552 -1.4576 3.7738 20 6 8.8599 -2.4636 5.6650 21 7 8.4469 -2.4005 6.9110 22 14 9.7724 -3.9767 5.0590 23 1 11.2306 -3.7932 5.2709 24 1 9.3089 -5.1693 5.8128 25 1 9.5030 -4.1705 3.6115 26 6 2.2975 3.4739 -0.6206 27 6 2.2055 4.7804 -1.3660 28 7 1.6807 2.3678 -0.9332 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3131 1.4025 1.7345 35 1 4.5431 2.9226 2.6657 36 1 6.2447 5.1532 2.3433 37 1 4.8700 5.6398 3.3639 38 1 6.5880 5.9882 5.2093 39 1 7.5865 4.6139 5.7418 40 1 7.8850 5.3702 4.1586 41 1 7.7477 3.1532 3.4088 42 1 7.5282 2.4064 5.7111 43 1 5.9818 1.6625 5.2382 44 1 7.6419 -0.2484 6.1624 45 1 8.6169 -3.1392 7.5162 46 1 2.9769 4.8148 -2.1354 47 1 1.2237 4.8645 -1.8319 48 1 2.3494 5.6068 -0.6700 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731624923.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:49 Heat of formation + Delta-G solvation = -32.792352 kcal Electronic energy + Delta-G solvation = -28815.926679 eV Core-core repulsion = 24713.032235 eV Total energy + Delta-G solvation = -4102.894445 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.41863 -40.35466 -39.96576 -38.03622 -35.94640 -35.71746 -34.94962 -33.24850 -32.50274 -31.92202 -30.91389 -28.76656 -27.92433 -27.08706 -25.62509 -24.48741 -23.07426 -21.98084 -21.23619 -21.06884 -20.46265 -19.88106 -18.62945 -17.70958 -17.17800 -17.04784 -16.72297 -16.45726 -16.41082 -16.23189 -15.78699 -15.46991 -15.21401 -15.07548 -14.92630 -14.62360 -14.31998 -14.03838 -13.85083 -13.66460 -13.60016 -13.39254 -13.30838 -13.17476 -13.04488 -13.00499 -12.82564 -12.74609 -12.47992 -12.38038 -12.33453 -12.11420 -11.84601 -11.76217 -11.47908 -10.80866 -10.36029 -10.29652 -10.00988 -9.97841 -9.54206 -9.29830 -8.44582 -5.92351 0.54594 1.13797 1.38774 1.41490 1.43351 1.54935 2.10574 2.30029 2.40649 2.53992 2.95025 3.23736 3.36085 3.57866 3.71826 3.91599 3.96194 4.06153 4.12457 4.20395 4.33130 4.37401 4.38086 4.41796 4.50541 4.54262 4.65833 4.72721 4.76835 4.78163 4.79167 4.87569 4.94485 5.00715 5.03322 5.05776 5.21137 5.30223 5.43713 5.55461 5.62833 5.90722 5.93155 6.14170 6.40027 6.55038 6.63806 6.78009 7.16461 7.41386 7.61346 8.16918 8.72659 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009246 B = 0.002782 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.701265 B =10062.024129 C =12459.311228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.113 3.887 3 N -0.355 5.355 4 C 0.117 3.883 5 C -0.316 4.316 6 C 0.590 3.410 7 O -0.586 6.586 8 N -0.704 5.704 9 C 0.138 3.862 10 C 0.078 3.922 11 H 0.102 0.898 12 C -0.177 4.177 13 N -0.673 5.673 14 C 0.065 3.935 15 C 0.439 3.561 16 O -0.623 6.623 17 N -0.574 5.574 18 C -0.330 4.330 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.920 5.920 22 Si 0.987 3.013 23 H -0.274 1.274 24 H -0.272 1.272 25 H -0.273 1.273 26 C 0.112 3.888 27 C -0.070 4.070 28 N -0.323 5.323 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.211 0.789 35 H 0.410 0.590 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.344 0.656 42 H 0.066 0.934 43 H 0.112 0.888 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.580 9.119 -4.499 17.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.006 4.006 3 N -0.133 5.133 4 C -0.036 4.036 5 C -0.331 4.331 6 C 0.379 3.621 7 O -0.468 6.468 8 N -0.354 5.354 9 C 0.014 3.986 10 C -0.032 4.032 11 H 0.120 0.880 12 C -0.236 4.236 13 N -0.305 5.305 14 C -0.067 4.067 15 C 0.227 3.773 16 O -0.509 6.509 17 N -0.212 5.212 18 C -0.459 4.459 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.812 3.188 23 H -0.200 1.200 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.055 4.055 27 C -0.129 4.129 28 N -0.146 5.146 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.146 0.854 34 H 0.228 0.772 35 H 0.246 0.754 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.163 0.837 42 H 0.084 0.916 43 H 0.129 0.871 44 H 0.230 0.770 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.101 0.899 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.671 8.690 -6.459 19.048 hybrid contribution 1.788 -0.520 1.456 2.364 sum -13.883 8.170 -5.003 16.868 Atomic orbital electron populations 1.22001 0.92828 1.04241 1.02469 1.22253 0.96928 0.75266 1.06137 1.48857 1.33754 1.11254 1.19438 1.23587 0.91592 0.93172 0.95296 1.20316 1.12783 0.95485 1.04540 1.17405 0.78723 0.86241 0.79747 1.90680 1.67157 1.21508 1.67475 1.45584 1.45990 1.15902 1.27952 1.21335 0.92895 0.91227 0.93176 1.21863 0.96826 0.89191 0.95365 0.88014 1.22385 0.99612 1.00473 1.01130 1.60171 1.26524 1.12383 1.31432 1.21586 1.01256 0.90589 0.93244 1.20934 0.84254 0.86023 0.86085 1.90517 1.57485 1.82494 1.20407 1.41932 1.50970 1.15380 1.12891 1.19616 1.33458 0.95200 0.97669 0.90468 1.25950 0.98369 1.01574 0.95219 1.69664 1.47053 1.34369 1.05043 0.85004 0.78285 0.77358 0.78186 1.19959 1.19647 1.19781 1.22760 0.93166 0.95614 0.93955 1.20283 1.03155 0.89947 0.99512 1.77051 1.25754 0.97204 1.14572 0.92536 0.92733 0.88096 0.88675 0.85436 0.77226 0.75387 0.93069 0.90384 0.90006 0.91964 0.92484 0.83673 0.91623 0.87050 0.76967 0.91399 0.90206 0.89870 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 10.09 71.98 0.73 -1.17 16 2 C 0.11 1.52 7.21 86.38 0.62 2.14 16 3 N -0.36 -7.58 3.65 -346.28 -1.26 -8.84 16 4 C 0.12 2.48 10.95 84.28 0.92 3.40 16 5 C -0.32 -8.43 6.13 -20.15 -0.12 -8.55 16 6 C 0.59 16.89 7.81 86.66 0.68 17.57 16 7 O -0.59 -19.94 14.92 -4.06 -0.06 -20.00 16 8 N -0.70 -16.68 5.38 -466.37 -2.51 -19.19 16 9 C 0.14 2.97 5.37 86.38 0.46 3.43 16 10 C 0.08 1.45 2.75 44.92 0.12 1.57 16 11 H 0.10 1.60 7.80 -2.39 -0.02 1.58 16 12 C -0.18 -2.86 9.16 71.98 0.66 -2.20 16 13 N -0.67 -17.56 5.31 -495.57 -2.63 -20.19 16 14 C 0.07 1.87 5.97 85.56 0.51 2.38 16 15 C 0.44 18.97 7.82 87.66 0.69 19.66 16 16 O -0.62 -32.19 15.78 -3.07 -0.05 -32.24 16 17 N -0.57 -27.41 5.29 -306.99 -1.62 -29.03 16 18 C -0.33 -17.87 9.68 84.04 0.81 -17.05 16 19 H 0.08 4.50 7.16 -2.91 -0.02 4.48 16 20 C -0.01 -0.58 5.50 84.92 0.47 -0.12 16 21 N -0.92 -47.71 13.05 21.66 0.28 -47.43 16 22 Si 0.99 41.48 29.55 68.60 2.03 43.50 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 C 0.11 3.06 7.26 43.52 0.32 3.38 16 27 C -0.07 -1.65 9.92 71.24 0.71 -0.94 16 28 N -0.32 -8.55 12.34 -46.67 -0.58 -9.13 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.13 1.07 8.06 -2.39 -0.02 1.05 16 34 H 0.21 3.11 7.46 -2.91 -0.02 3.09 16 35 H 0.41 8.79 7.06 -92.71 -0.65 8.14 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 1.03 7.45 -2.39 -0.02 1.01 16 40 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 41 H 0.34 10.25 8.17 -89.69 -0.73 9.51 16 42 H 0.07 1.66 7.44 -2.39 -0.02 1.64 16 43 H 0.11 2.67 8.05 -2.39 -0.02 2.65 16 44 H 0.40 17.90 7.90 -92.71 -0.73 17.17 16 45 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16 46 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.08 2.15 6.55 -2.38 -0.02 2.13 16 Total: -1.00 -73.82 405.01 0.05 -73.77 By element: Atomic # 1 Polarization: 46.38 SS G_CDS: -1.11 Total: 45.27 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: 7.57 Total: 23.51 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -8.32 Total: -133.81 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -0.11 Total: -52.24 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Total: -73.82 0.05 -73.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731624923.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.975 kcal (2) G-P(sol) polarization free energy of solvation -73.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds