Wall clock time and date at job start Tue Mar 31 2020 20:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46688 * 2 1 4 4 C 1.34260 * 125.75083 * 125.00144 * 3 2 1 5 5 C 1.38044 * 107.41552 * 179.97438 * 4 3 2 6 6 C 1.47425 * 126.41419 * 179.97438 * 5 4 3 7 7 O 1.21609 * 119.99732 * 180.02562 * 6 5 4 8 8 N 1.34776 * 120.00096 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99830 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46998 * 179.97438 * 9 8 6 11 11 H 1.09008 * 109.47166 * 65.00224 * 10 9 8 12 12 C 1.53001 * 109.47217 * 184.99817 * 10 9 8 13 13 N 1.46901 * 109.47401 * 305.00153 * 10 9 8 14 14 C 1.46895 * 110.99919 * 154.99775 * 13 10 9 15 15 C 1.50701 * 109.46864 * 180.02562 * 14 13 10 16 16 O 1.21292 * 120.00252 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00173 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00006 * 179.97438 * 17 15 14 19 19 H 1.07992 * 120.00212 * 0.02562 * 18 17 15 20 20 C 1.38945 * 119.99833 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99952 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00176 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47014 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47265 * 120.00106 * 22 20 18 25 25 H 1.48499 * 109.47112 * 240.00016 * 22 20 18 26 26 C 1.41297 * 107.16972 * 0.02562 * 5 4 3 27 27 C 1.50699 * 125.98575 * 179.97438 * 26 5 4 28 28 N 1.30446 * 108.02198 * 359.74012 * 26 5 4 29 29 H 1.09002 * 109.46820 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47230 * 299.99915 * 1 2 3 31 31 H 1.09000 * 109.47236 * 60.00319 * 1 2 3 32 32 H 1.08999 * 109.47230 * 240.00085 * 2 1 3 33 33 H 1.09000 * 109.47236 * 119.99680 * 2 1 3 34 34 H 1.08001 * 126.29385 * 359.95473 * 4 3 2 35 35 H 0.96993 * 120.00074 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.47570 * 299.99865 * 9 8 6 37 37 H 1.09001 * 109.47231 * 60.00462 * 9 8 6 38 38 H 1.09006 * 109.47075 * 60.00528 * 12 10 9 39 39 H 1.09000 * 109.46943 * 179.97438 * 12 10 9 40 40 H 1.08996 * 109.47325 * 300.00052 * 12 10 9 41 41 H 1.00896 * 110.99486 * 278.95702 * 13 10 9 42 42 H 1.09003 * 109.47478 * 299.99664 * 14 13 10 43 43 H 1.09002 * 109.47232 * 60.00363 * 14 13 10 44 44 H 0.97002 * 119.99713 * 359.97438 * 17 15 14 45 45 H 0.97006 * 119.99957 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.46969 * 90.00099 * 27 26 5 47 47 H 1.09002 * 109.46867 * 210.00000 * 27 26 5 48 48 H 1.09004 * 109.47352 * 330.00133 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8689 1.9126 0.8925 5 6 3.0712 3.2309 0.5365 6 6 3.9324 4.2034 1.2336 7 8 4.0251 5.3420 0.8165 8 7 4.6168 3.8307 2.3333 9 6 5.4729 4.7971 3.0257 10 6 6.1296 4.1237 4.2324 11 1 6.8017 3.3374 3.8886 12 6 6.9241 5.1626 5.0264 13 7 5.0916 3.5393 5.0921 14 6 5.6305 2.4275 5.8866 15 6 4.5392 1.8543 6.7535 16 8 3.4224 2.3260 6.7137 17 7 4.8043 0.8183 7.5738 18 6 3.8115 0.2972 8.3627 19 1 2.8170 0.7166 8.3267 20 6 4.0847 -0.7712 9.2080 21 7 5.2948 -1.2819 9.2514 22 14 2.7323 -1.4809 10.2836 23 1 1.4706 -0.7332 10.0501 24 1 2.5291 -2.9121 9.9436 25 1 3.1218 -1.3618 11.7116 26 6 2.2975 3.4739 -0.6206 27 6 2.2055 4.7804 -1.3660 28 7 1.6807 2.3678 -0.9332 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3131 1.4025 1.7345 35 1 4.5431 2.9226 2.6657 36 1 6.2447 5.1532 2.3433 37 1 4.8700 5.6398 3.3639 38 1 6.2520 5.9489 5.3703 39 1 7.3915 4.6829 5.8864 40 1 7.6943 5.5961 4.3886 41 1 4.6773 4.2413 5.6867 42 1 6.0079 1.6531 5.2188 43 1 6.4422 2.7912 6.5167 44 1 5.6975 0.4413 7.6058 45 1 5.4854 -2.0281 9.8413 46 1 2.9769 4.8148 -2.1354 47 1 1.2237 4.8645 -1.8319 48 1 2.3494 5.6068 -0.6700 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731624925.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:52 Heat of formation + Delta-G solvation = -7.231339 kcal Electronic energy + Delta-G solvation = -28846.761275 eV Core-core repulsion = 24744.975239 eV Total energy + Delta-G solvation = -4101.786036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.49806 -39.19946 -38.39910 -36.86873 -34.95105 -34.13538 -33.73565 -31.64641 -31.33506 -30.86763 -29.96477 -27.90651 -26.51220 -26.04761 -24.04088 -23.66053 -22.22269 -21.04869 -20.26931 -19.56248 -19.30941 -17.98787 -17.66989 -16.32607 -16.17811 -15.92871 -15.73758 -15.37576 -15.03486 -14.66611 -14.56821 -14.28908 -14.18664 -13.88306 -13.82488 -13.36797 -13.17264 -13.10433 -12.93646 -12.57430 -12.52034 -12.43846 -12.24164 -12.22577 -12.00404 -11.71260 -11.65383 -11.63072 -11.43416 -11.11911 -10.98169 -10.85602 -10.39876 -10.28733 -9.71062 -9.58424 -9.43692 -8.96617 -8.60463 -8.55047 -8.15319 -8.02706 -6.48391 -3.89319 1.45936 2.14353 2.20288 3.10973 3.22282 3.29132 3.39499 3.58450 3.83665 4.02191 4.15264 4.26484 4.52823 4.63281 4.70931 4.79651 4.88687 4.94543 5.05535 5.09832 5.16916 5.23944 5.29707 5.34677 5.42320 5.46519 5.51826 5.63716 5.65583 5.69030 5.76090 5.80682 5.87170 5.90295 5.96359 5.98976 6.05064 6.20173 6.49484 6.60818 6.71937 7.11457 7.49113 7.50086 7.56284 7.78353 7.99845 8.46142 8.54258 9.11598 9.47521 9.98691 10.69269 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009185 B = 0.002845 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.695987 B = 9839.421856 C =12393.814129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 N -0.358 5.358 4 C 0.106 3.894 5 C -0.289 4.289 6 C 0.594 3.406 7 O -0.554 6.554 8 N -0.712 5.712 9 C 0.137 3.863 10 C 0.068 3.932 11 H 0.083 0.917 12 C -0.181 4.181 13 N -0.664 5.664 14 C 0.049 3.951 15 C 0.439 3.561 16 O -0.582 6.582 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.928 3.072 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.129 3.871 27 C -0.075 4.075 28 N -0.304 5.304 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.184 0.816 35 H 0.405 0.595 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.354 0.646 42 H 0.085 0.915 43 H 0.045 0.955 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.090 4.482 -16.930 17.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.136 5.136 4 C -0.045 4.045 5 C -0.304 4.304 6 C 0.381 3.619 7 O -0.434 6.434 8 N -0.362 5.362 9 C 0.012 3.988 10 C -0.043 4.043 11 H 0.101 0.899 12 C -0.240 4.240 13 N -0.296 5.296 14 C -0.083 4.083 15 C 0.225 3.775 16 O -0.466 6.466 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.755 3.245 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.039 4.039 27 C -0.133 4.133 28 N -0.125 5.125 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.201 0.799 35 H 0.240 0.760 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.174 0.826 42 H 0.103 0.897 43 H 0.063 0.937 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.087 0.913 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.643 4.302 -18.425 18.932 hybrid contribution 1.100 -0.561 2.266 2.581 sum 0.456 3.741 -16.159 16.593 Atomic orbital electron populations 1.22054 0.93400 1.03121 1.03795 1.21853 0.96553 0.76828 1.04300 1.48511 1.34234 1.10549 1.20276 1.23214 0.92632 0.93979 0.94719 1.20235 1.11989 0.94455 1.03731 1.17213 0.78561 0.86492 0.79589 1.90706 1.65578 1.20103 1.67001 1.45612 1.47140 1.15678 1.27805 1.21284 0.93458 0.91788 0.92231 1.21865 0.92543 0.96483 0.93429 0.89863 1.22432 1.00993 0.99775 1.00815 1.60186 1.29977 1.12924 1.26543 1.21722 0.96051 0.94558 0.96018 1.19822 0.89543 0.83865 0.84304 1.90541 1.23482 1.62633 1.69957 1.41882 1.12948 1.28988 1.36236 1.19740 0.93089 1.12875 1.17146 0.87892 1.25258 0.97379 0.96955 0.98324 1.69618 1.19657 1.25652 1.39348 0.85818 0.80720 0.78638 0.79294 1.19204 1.20738 1.20733 1.22440 0.92889 0.94958 0.93572 1.20310 1.02241 0.90980 0.99809 1.77108 1.24904 0.96809 1.13724 0.90454 0.91745 0.91079 0.89412 0.87982 0.79893 0.75963 0.91418 0.91564 0.91960 0.92010 0.91829 0.82612 0.89712 0.93700 0.77498 0.91897 0.90471 0.91309 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 10.09 37.16 0.38 -0.88 16 2 C 0.13 0.96 7.21 -4.04 -0.03 0.93 16 3 N -0.36 -4.01 3.65 -60.80 -0.22 -4.23 16 4 C 0.11 1.20 10.95 -16.56 -0.18 1.02 16 5 C -0.29 -3.88 6.13 -105.07 -0.64 -4.52 16 6 C 0.59 8.52 7.81 -12.52 -0.10 8.42 16 7 O -0.55 -9.27 14.92 5.27 0.08 -9.19 16 8 N -0.71 -8.82 5.38 -61.38 -0.33 -9.15 16 9 C 0.14 1.57 5.37 -4.04 -0.02 1.55 16 10 C 0.07 0.72 2.75 -67.71 -0.19 0.53 16 11 H 0.08 0.82 7.80 -51.92 -0.40 0.41 16 12 C -0.18 -1.69 9.16 37.16 0.34 -1.35 16 13 N -0.66 -9.26 5.32 -107.99 -0.57 -9.83 16 14 C 0.05 0.76 5.96 -4.98 -0.03 0.73 16 15 C 0.44 9.62 7.82 -10.98 -0.09 9.53 16 16 O -0.58 -14.93 15.78 5.55 0.09 -14.84 16 17 N -0.56 -13.51 5.29 -10.97 -0.06 -13.57 16 18 C -0.30 -8.02 9.68 -14.93 -0.14 -8.17 16 19 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -23.74 13.05 55.50 0.72 -23.02 16 22 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.13 1.74 7.26 -82.02 -0.60 1.15 16 27 C -0.07 -0.85 9.92 36.01 0.36 -0.50 16 28 N -0.30 -4.04 12.34 33.90 0.42 -3.62 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.59 8.06 -51.93 -0.42 0.17 16 34 H 0.18 1.57 7.46 -52.49 -0.39 1.18 16 35 H 0.40 4.70 7.06 -40.82 -0.29 4.42 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 39 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.35 5.42 8.17 -39.29 -0.32 5.10 16 42 H 0.08 1.17 8.06 -51.93 -0.42 0.75 16 43 H 0.05 0.64 7.44 -51.93 -0.39 0.25 16 44 H 0.39 8.98 7.90 -40.82 -0.32 8.66 16 45 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 46 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.10 1.20 6.55 -51.93 -0.34 0.86 16 LS Contribution 405.02 15.07 6.10 6.10 Total: -1.00 -33.63 405.02 -7.25 -40.88 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -7.42 Total: 16.15 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -1.04 Total: 8.93 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: -0.04 Total: -63.43 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: 0.17 Total: -24.03 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.63 -7.25 -40.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731624925.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.644 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds