Wall clock time and date at job start Tue Mar 31 2020 20:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46688 * 2 1 4 4 C 1.34260 * 125.75083 * 125.00144 * 3 2 1 5 5 C 1.38044 * 107.41552 * 179.97438 * 4 3 2 6 6 C 1.47425 * 126.41419 * 179.97438 * 5 4 3 7 7 O 1.21609 * 119.99732 * 180.02562 * 6 5 4 8 8 N 1.34776 * 120.00096 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99830 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46998 * 179.97438 * 9 8 6 11 11 H 1.09008 * 109.47166 * 65.00224 * 10 9 8 12 12 C 1.53001 * 109.47217 * 184.99817 * 10 9 8 13 13 N 1.46901 * 109.47401 * 305.00153 * 10 9 8 14 14 C 1.46895 * 110.99919 * 154.99775 * 13 10 9 15 15 C 1.50701 * 109.46864 * 180.02562 * 14 13 10 16 16 O 1.21292 * 120.00252 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00173 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00006 * 179.97438 * 17 15 14 19 19 H 1.07992 * 120.00212 * 0.02562 * 18 17 15 20 20 C 1.38945 * 119.99833 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99952 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00176 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47014 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47265 * 120.00106 * 22 20 18 25 25 H 1.48499 * 109.47112 * 240.00016 * 22 20 18 26 26 C 1.41297 * 107.16972 * 0.02562 * 5 4 3 27 27 C 1.50699 * 125.98575 * 179.97438 * 26 5 4 28 28 N 1.30446 * 108.02198 * 359.74012 * 26 5 4 29 29 H 1.09002 * 109.46820 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47230 * 299.99915 * 1 2 3 31 31 H 1.09000 * 109.47236 * 60.00319 * 1 2 3 32 32 H 1.08999 * 109.47230 * 240.00085 * 2 1 3 33 33 H 1.09000 * 109.47236 * 119.99680 * 2 1 3 34 34 H 1.08001 * 126.29385 * 359.95473 * 4 3 2 35 35 H 0.96993 * 120.00074 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.47570 * 299.99865 * 9 8 6 37 37 H 1.09001 * 109.47231 * 60.00462 * 9 8 6 38 38 H 1.09006 * 109.47075 * 60.00528 * 12 10 9 39 39 H 1.09000 * 109.46943 * 179.97438 * 12 10 9 40 40 H 1.08996 * 109.47325 * 300.00052 * 12 10 9 41 41 H 1.00896 * 110.99486 * 278.95702 * 13 10 9 42 42 H 1.09003 * 109.47478 * 299.99664 * 14 13 10 43 43 H 1.09002 * 109.47232 * 60.00363 * 14 13 10 44 44 H 0.97002 * 119.99713 * 359.97438 * 17 15 14 45 45 H 0.97006 * 119.99957 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.46969 * 90.00099 * 27 26 5 47 47 H 1.09002 * 109.46867 * 210.00000 * 27 26 5 48 48 H 1.09004 * 109.47352 * 330.00133 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8689 1.9126 0.8925 5 6 3.0712 3.2309 0.5365 6 6 3.9324 4.2034 1.2336 7 8 4.0251 5.3420 0.8165 8 7 4.6168 3.8307 2.3333 9 6 5.4729 4.7971 3.0257 10 6 6.1296 4.1237 4.2324 11 1 6.8017 3.3374 3.8886 12 6 6.9241 5.1626 5.0264 13 7 5.0916 3.5393 5.0921 14 6 5.6305 2.4275 5.8866 15 6 4.5392 1.8543 6.7535 16 8 3.4224 2.3260 6.7137 17 7 4.8043 0.8183 7.5738 18 6 3.8115 0.2972 8.3627 19 1 2.8170 0.7166 8.3267 20 6 4.0847 -0.7712 9.2080 21 7 5.2948 -1.2819 9.2514 22 14 2.7323 -1.4809 10.2836 23 1 1.4706 -0.7332 10.0501 24 1 2.5291 -2.9121 9.9436 25 1 3.1218 -1.3618 11.7116 26 6 2.2975 3.4739 -0.6206 27 6 2.2055 4.7804 -1.3660 28 7 1.6807 2.3678 -0.9332 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3131 1.4025 1.7345 35 1 4.5431 2.9226 2.6657 36 1 6.2447 5.1532 2.3433 37 1 4.8700 5.6398 3.3639 38 1 6.2520 5.9489 5.3703 39 1 7.3915 4.6829 5.8864 40 1 7.6943 5.5961 4.3886 41 1 4.6773 4.2413 5.6867 42 1 6.0079 1.6531 5.2188 43 1 6.4422 2.7912 6.5167 44 1 5.6975 0.4413 7.6058 45 1 5.4854 -2.0281 9.8413 46 1 2.9769 4.8148 -2.1354 47 1 1.2237 4.8645 -1.8319 48 1 2.3494 5.6068 -0.6700 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731624925.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:51 Heat of formation + Delta-G solvation = -32.842231 kcal Electronic energy + Delta-G solvation = -28847.871847 eV Core-core repulsion = 24744.975239 eV Total energy + Delta-G solvation = -4102.896607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.41687 -40.35443 -39.96556 -38.03641 -35.94739 -35.71682 -34.94955 -33.24809 -32.50331 -31.92286 -30.91289 -28.76930 -27.92503 -27.08772 -25.62609 -24.49238 -23.07602 -21.98078 -21.23538 -21.06923 -20.46158 -19.88165 -18.62818 -17.71213 -17.17268 -17.03168 -16.74721 -16.46566 -16.40573 -16.22526 -15.77564 -15.46151 -15.26958 -15.05502 -14.84730 -14.69621 -14.31904 -14.01632 -13.84996 -13.67164 -13.61455 -13.40017 -13.30416 -13.17873 -13.04542 -13.01024 -12.83538 -12.74756 -12.47664 -12.36559 -12.34334 -12.11083 -11.84438 -11.76052 -11.48535 -10.80869 -10.35660 -10.29672 -10.00900 -9.97702 -9.54064 -9.29812 -8.44695 -5.92386 0.54615 1.13880 1.37326 1.41963 1.43427 1.56446 2.10465 2.30004 2.40516 2.54264 2.94985 3.23635 3.36117 3.57832 3.71899 3.91616 3.96442 4.05764 4.12506 4.20317 4.32734 4.37426 4.37892 4.41667 4.50589 4.54237 4.65841 4.72808 4.75948 4.77945 4.78103 4.87504 4.94476 5.00979 5.03282 5.05797 5.20167 5.30230 5.43955 5.55520 5.62902 5.90894 5.93243 6.14266 6.40040 6.55157 6.63799 6.78099 7.16579 7.41487 7.61338 8.16919 8.72746 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009185 B = 0.002845 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.695987 B = 9839.421856 C =12393.814129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.115 3.885 3 N -0.355 5.355 4 C 0.117 3.883 5 C -0.316 4.316 6 C 0.590 3.410 7 O -0.586 6.586 8 N -0.704 5.704 9 C 0.138 3.862 10 C 0.078 3.922 11 H 0.102 0.898 12 C -0.177 4.177 13 N -0.673 5.673 14 C 0.065 3.935 15 C 0.440 3.560 16 O -0.623 6.623 17 N -0.574 5.574 18 C -0.329 4.329 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.987 3.013 23 H -0.274 1.274 24 H -0.271 1.271 25 H -0.274 1.274 26 C 0.112 3.888 27 C -0.070 4.070 28 N -0.323 5.323 29 H 0.101 0.899 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.126 0.874 34 H 0.211 0.789 35 H 0.410 0.590 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.344 0.656 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.396 0.604 45 H 0.276 0.724 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.171 3.174 -16.957 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.004 4.004 3 N -0.133 5.133 4 C -0.036 4.036 5 C -0.331 4.331 6 C 0.379 3.621 7 O -0.468 6.468 8 N -0.354 5.354 9 C 0.014 3.986 10 C -0.032 4.032 11 H 0.120 0.880 12 C -0.236 4.236 13 N -0.305 5.305 14 C -0.067 4.067 15 C 0.227 3.773 16 O -0.509 6.509 17 N -0.212 5.212 18 C -0.458 4.458 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.812 3.188 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.055 4.055 27 C -0.129 4.129 28 N -0.146 5.146 29 H 0.120 0.880 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.122 0.878 33 H 0.144 0.856 34 H 0.228 0.772 35 H 0.246 0.754 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.163 0.837 42 H 0.130 0.870 43 H 0.084 0.916 44 H 0.230 0.770 45 H 0.086 0.914 46 H 0.104 0.896 47 H 0.099 0.901 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.466 2.969 -18.461 18.704 hybrid contribution 0.743 -0.154 2.237 2.362 sum 1.209 2.814 -16.224 16.511 Atomic orbital electron populations 1.22023 0.93488 1.04220 1.02204 1.22244 0.96513 0.75277 1.06317 1.48862 1.33643 1.11306 1.19506 1.23586 0.91851 0.93348 0.94864 1.20316 1.12983 0.95411 1.04419 1.17407 0.78608 0.86248 0.79862 1.90681 1.66775 1.21375 1.67990 1.45583 1.46684 1.16001 1.27159 1.21335 0.93338 0.91304 0.92656 1.21862 0.91836 0.97194 0.92351 0.88009 1.22385 1.01105 0.99236 1.00875 1.60165 1.31435 1.12665 1.26241 1.21588 0.93755 0.95500 0.95836 1.20939 0.90425 0.82417 0.83495 1.90518 1.25894 1.63502 1.70979 1.41939 1.12601 1.29888 1.36776 1.19645 0.92990 1.14131 1.19070 0.90493 1.25948 0.99445 0.96776 0.98962 1.69669 1.20709 1.25944 1.39812 0.84948 0.77904 0.78107 0.77873 1.19914 1.19619 1.19910 1.22759 0.93096 0.95609 0.94039 1.20281 1.03220 0.89858 0.99532 1.77050 1.25416 0.97281 1.14811 0.88016 0.93367 0.92547 0.87798 0.85557 0.77231 0.75389 0.90383 0.93081 0.92488 0.91963 0.90007 0.83679 0.87049 0.91610 0.76967 0.91409 0.89619 0.90126 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 10.09 71.98 0.73 -1.53 16 2 C 0.12 1.53 7.21 86.38 0.62 2.15 16 3 N -0.36 -7.55 3.65 -346.28 -1.26 -8.81 16 4 C 0.12 2.48 10.95 84.28 0.92 3.40 16 5 C -0.32 -8.42 6.13 -20.15 -0.12 -8.55 16 6 C 0.59 16.89 7.81 86.66 0.68 17.57 16 7 O -0.59 -19.96 14.92 -4.06 -0.06 -20.02 16 8 N -0.70 -16.68 5.38 -466.37 -2.51 -19.19 16 9 C 0.14 2.97 5.37 86.38 0.46 3.43 16 10 C 0.08 1.45 2.75 44.92 0.12 1.57 16 11 H 0.10 1.60 7.80 -2.38 -0.02 1.58 16 12 C -0.18 -2.86 9.16 71.98 0.66 -2.20 16 13 N -0.67 -17.56 5.32 -495.57 -2.63 -20.19 16 14 C 0.07 1.87 5.96 85.56 0.51 2.38 16 15 C 0.44 18.98 7.82 87.66 0.69 19.67 16 16 O -0.62 -32.20 15.78 -3.07 -0.05 -32.25 16 17 N -0.57 -27.42 5.29 -306.99 -1.62 -29.04 16 18 C -0.33 -17.81 9.68 84.04 0.81 -16.99 16 19 H 0.08 4.50 7.16 -2.91 -0.02 4.48 16 20 C -0.01 -0.60 5.50 84.92 0.47 -0.13 16 21 N -0.92 -47.68 13.05 21.66 0.28 -47.39 16 22 Si 0.99 41.48 29.55 68.60 2.03 43.51 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 C 0.11 3.05 7.26 43.52 0.32 3.37 16 27 C -0.07 -1.65 9.92 71.24 0.71 -0.94 16 28 N -0.32 -8.52 12.34 -46.67 -0.58 -9.09 16 29 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.13 1.08 8.06 -2.39 -0.02 1.06 16 34 H 0.21 3.10 7.46 -2.91 -0.02 3.08 16 35 H 0.41 8.79 7.06 -92.71 -0.65 8.13 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 0.99 8.13 -2.38 -0.02 0.97 16 39 H 0.06 1.03 7.45 -2.39 -0.02 1.01 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.34 10.25 8.17 -89.70 -0.73 9.51 16 42 H 0.11 2.67 8.06 -2.39 -0.02 2.65 16 43 H 0.07 1.66 7.44 -2.39 -0.02 1.65 16 44 H 0.40 17.90 7.90 -92.71 -0.73 17.17 16 45 H 0.28 13.43 8.31 -92.70 -0.77 12.66 16 46 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.08 2.13 6.55 -2.38 -0.02 2.11 16 Total: -1.00 -73.96 405.02 0.05 -73.90 By element: Atomic # 1 Polarization: 46.48 SS G_CDS: -1.11 Total: 45.37 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 7.57 Total: 23.21 kcal Atomic # 7 Polarization: -125.40 SS G_CDS: -8.32 Total: -133.72 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -0.11 Total: -52.27 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -73.96 0.05 -73.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731624925.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.061 kcal (2) G-P(sol) polarization free energy of solvation -73.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds