Wall clock time and date at job start Tue Mar 31 2020 20:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47153 * 2 1 4 4 N 1.46498 * 109.47429 * 120.00552 * 2 1 3 5 5 C 1.34264 * 125.75124 * 274.99885 * 4 2 1 6 6 C 1.38036 * 107.41655 * 179.73823 * 5 4 2 7 7 C 1.47430 * 126.41596 * 179.97438 * 6 5 4 8 8 O 1.21606 * 119.99813 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00215 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00082 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47442 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46837 * 64.99757 * 11 10 9 13 13 C 1.52995 * 109.47589 * 185.00341 * 11 10 9 14 14 N 1.46901 * 109.47051 * 305.00367 * 11 10 9 15 15 C 1.46907 * 111.00179 * 154.99798 * 14 11 10 16 16 C 1.50700 * 109.47416 * 180.02562 * 15 14 11 17 17 O 1.21298 * 119.99385 * 359.97438 * 16 15 14 18 18 N 1.34766 * 120.00194 * 180.02562 * 16 15 14 19 19 C 1.37092 * 120.00202 * 179.97438 * 18 16 15 20 20 H 1.08005 * 120.00116 * 359.97438 * 19 18 16 21 21 C 1.38957 * 120.00384 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99537 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00117 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46821 * 90.00401 * 23 21 19 25 25 H 1.48498 * 109.47145 * 210.00135 * 23 21 19 26 26 H 1.48499 * 109.47157 * 330.00058 * 23 21 19 27 27 C 1.41294 * 107.17120 * 359.97438 * 6 5 4 28 28 N 1.30440 * 108.02337 * 0.02562 * 27 6 5 29 29 H 1.09002 * 109.46714 * 299.99430 * 1 2 3 30 30 H 1.08998 * 109.47470 * 59.99734 * 1 2 3 31 31 H 1.09005 * 109.47040 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46714 * 240.00569 * 2 1 3 33 33 H 1.09007 * 109.47395 * 300.00648 * 3 2 1 34 34 H 1.09004 * 109.47202 * 60.00259 * 3 2 1 35 35 H 1.09004 * 109.47438 * 180.02562 * 3 2 1 36 36 H 1.07998 * 126.29100 * 359.73741 * 5 4 2 37 37 H 0.97006 * 119.99684 * 0.02562 * 9 7 6 38 38 H 1.09003 * 109.47488 * 300.00495 * 10 9 7 39 39 H 1.09005 * 109.46987 * 60.00392 * 10 9 7 40 40 H 1.09001 * 109.47508 * 59.99827 * 13 11 10 41 41 H 1.09006 * 109.47387 * 180.02562 * 13 11 10 42 42 H 1.09005 * 109.46924 * 299.99621 * 13 11 10 43 43 H 1.00905 * 111.00058 * 31.04510 * 14 11 10 44 44 H 1.09003 * 109.46476 * 300.00120 * 15 14 11 45 45 H 1.08993 * 109.47149 * 59.99786 * 15 14 11 46 46 H 0.97005 * 120.00008 * 359.97438 * 18 16 15 47 47 H 0.97004 * 119.99918 * 179.97438 * 22 21 19 48 48 H 1.08003 * 125.98909 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1904 -0.1364 2.4068 6 6 2.6573 -1.1239 3.2508 7 6 2.9872 -0.9702 4.6794 8 8 2.8549 0.1104 5.2212 9 7 3.4354 -2.0275 5.3851 10 6 3.7637 -1.8746 6.8045 11 6 4.2458 -3.2147 7.3637 12 1 5.1815 -3.4948 6.8798 13 6 4.4698 -3.0873 8.8718 14 7 3.2327 -4.2464 7.1046 15 6 3.8409 -5.5830 7.0636 16 6 2.7735 -6.6126 6.7957 17 8 1.6196 -6.2669 6.6535 18 7 3.1009 -7.9174 6.7153 19 6 2.1299 -8.8541 6.4721 20 1 1.1024 -8.5464 6.3454 21 6 2.4675 -10.1995 6.3886 22 7 3.7176 -10.5739 6.5432 23 14 1.1442 -11.4758 6.0580 24 1 1.0044 -11.6757 4.5932 25 1 1.5244 -12.7603 6.6988 26 1 -0.1479 -11.0060 6.6192 27 6 2.7597 -2.3095 2.4891 28 7 2.3782 -2.0409 1.2710 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.9988 0.8929 2.6716 37 1 3.5412 -2.8894 4.9528 38 1 4.5515 -1.1298 6.9171 39 1 2.8771 -1.5509 7.3498 40 1 3.5341 -2.8072 9.3557 41 1 4.8137 -4.0419 9.2701 42 1 5.2216 -2.3218 9.0640 43 1 2.7286 -4.0522 6.2523 44 1 4.5869 -5.6185 6.2696 45 1 4.3182 -5.7945 8.0203 46 1 4.0237 -8.1939 6.8294 47 1 3.9533 -11.5131 6.4853 48 1 3.0959 -3.2697 2.8517 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731630283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:13 Heat of formation + Delta-G solvation = 0.020376 kcal Electronic energy + Delta-G solvation = -28548.045852 eV Core-core repulsion = 24446.574274 eV Total energy + Delta-G solvation = -4101.471578 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.67179 -39.47022 -38.34972 -36.88586 -36.16944 -34.09025 -33.66820 -31.35935 -30.99336 -30.71394 -30.18724 -27.89244 -26.80709 -26.13516 -24.07356 -23.53457 -22.44137 -20.62595 -20.36310 -20.13902 -19.30971 -18.26765 -17.85898 -16.51868 -16.06685 -15.98265 -15.81160 -15.48580 -15.32944 -15.10004 -14.59536 -14.51592 -14.35998 -13.94056 -13.85999 -13.43155 -13.35784 -13.19276 -12.83283 -12.71705 -12.70771 -12.52331 -12.44328 -11.94186 -11.87730 -11.77872 -11.71185 -11.63820 -11.40281 -11.22213 -11.06856 -10.82585 -10.39166 -10.21650 -9.92953 -9.83191 -9.50990 -9.20302 -8.82602 -8.46489 -8.11062 -7.96310 -6.41922 -3.82561 1.33973 1.99341 2.02020 3.16999 3.18098 3.26856 3.32970 3.40920 3.89886 3.95331 4.06751 4.29060 4.30170 4.43246 4.48817 4.53037 4.71080 4.89924 4.93644 4.98368 5.01091 5.11985 5.20079 5.21072 5.25803 5.26998 5.33028 5.48773 5.50718 5.59778 5.61162 5.70922 5.80097 5.81844 5.97603 6.02030 6.18029 6.22366 6.30691 6.42827 6.57548 7.17713 7.30660 7.46207 7.55323 7.60077 8.06153 8.22063 8.60959 9.17915 9.54021 10.05421 10.75759 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.002452 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.218213 B =11418.390333 C =13696.914535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.150 3.850 3 C -0.168 4.168 4 N -0.356 5.356 5 C 0.129 3.871 6 C -0.295 4.295 7 C 0.600 3.400 8 O -0.554 6.554 9 N -0.727 5.727 10 C 0.121 3.879 11 C 0.071 3.929 12 H 0.049 0.951 13 C -0.138 4.138 14 N -0.664 5.664 15 C 0.049 3.951 16 C 0.439 3.561 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.084 3.916 28 N -0.294 5.294 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.185 0.815 37 H 0.398 0.602 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.348 0.652 44 H 0.044 0.956 45 H 0.088 0.912 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.713 22.253 -10.205 24.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.049 3.951 3 C -0.226 4.226 4 N -0.135 5.135 5 C -0.023 4.023 6 C -0.310 4.310 7 C 0.388 3.612 8 O -0.432 6.432 9 N -0.379 5.379 10 C -0.003 4.003 11 C -0.039 4.039 12 H 0.067 0.933 13 C -0.196 4.196 14 N -0.300 5.300 15 C -0.084 4.084 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.104 4.104 28 N -0.112 5.112 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.202 0.798 37 H 0.233 0.767 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.169 0.831 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.496 22.599 -10.574 24.995 hybrid contribution 0.643 -1.153 -0.296 1.353 sum 2.140 21.446 -10.870 24.138 Atomic orbital electron populations 1.22266 0.93106 1.03764 1.03387 1.21416 0.95223 0.92857 0.85561 1.22246 1.02514 0.93760 1.04063 1.48813 1.48700 1.07512 1.08508 1.22829 0.95311 0.99528 0.84583 1.20224 1.20361 0.94712 0.95686 1.17168 0.75882 0.83570 0.84624 1.90756 1.54531 1.26407 1.71552 1.45794 1.68079 1.12739 1.11336 1.21585 1.01510 0.96986 0.80177 1.21817 0.93969 0.90598 0.97549 0.93318 1.21735 1.02026 1.01851 0.94008 1.60121 1.25855 1.00097 1.43881 1.21760 0.95771 0.89277 1.01544 1.19804 0.89596 0.83443 0.84701 1.90538 1.20369 1.80307 1.55376 1.41859 1.10960 1.04660 1.62494 1.19699 0.91551 0.86166 1.45408 0.87928 1.25260 0.97133 0.98124 0.97425 1.69610 1.16797 1.17829 1.50064 0.85864 0.80587 0.79415 0.78473 1.20425 1.20929 1.19400 1.24119 0.97121 0.98825 0.90369 1.77221 1.20832 0.92516 1.20665 0.91640 0.90157 0.91264 0.87484 0.89613 0.91221 0.91269 0.79825 0.76718 0.90813 0.90281 0.91503 0.92017 0.92501 0.83090 0.93838 0.89401 0.77471 0.91880 0.79349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 9.52 37.16 0.35 -0.58 16 2 C 0.15 0.95 3.91 -67.93 -0.27 0.68 16 3 C -0.17 -0.68 8.82 37.15 0.33 -0.35 16 4 N -0.36 -3.49 3.50 -54.32 -0.19 -3.68 16 5 C 0.13 1.32 10.39 -16.56 -0.17 1.15 16 6 C -0.29 -3.53 6.13 -105.07 -0.64 -4.17 16 7 C 0.60 8.04 7.81 -12.52 -0.10 7.94 16 8 O -0.55 -8.95 16.90 5.27 0.09 -8.86 16 9 N -0.73 -8.58 4.98 -61.38 -0.31 -8.89 16 10 C 0.12 1.41 5.31 -4.05 -0.02 1.39 16 11 C 0.07 0.83 2.81 -67.72 -0.19 0.64 16 12 H 0.05 0.53 7.80 -51.93 -0.40 0.12 16 13 C -0.14 -1.50 9.41 37.16 0.35 -1.15 16 14 N -0.66 -10.27 5.93 -107.99 -0.64 -10.91 16 15 C 0.05 0.83 5.97 -4.97 -0.03 0.80 16 16 C 0.44 10.15 7.82 -10.99 -0.09 10.07 16 17 O -0.58 -15.62 15.78 5.54 0.09 -15.53 16 18 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 19 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 23 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C 0.08 0.97 11.50 -16.98 -0.20 0.77 16 28 N -0.29 -3.60 12.50 30.86 0.39 -3.21 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.07 0.26 7.13 -51.93 -0.37 -0.11 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.18 1.47 7.23 -52.49 -0.38 1.09 16 37 H 0.40 4.23 6.33 -40.82 -0.26 3.97 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.35 5.55 6.41 -39.29 -0.25 5.30 16 44 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 45 H 0.09 1.38 7.44 -51.93 -0.39 1.00 16 46 H 0.39 9.34 7.90 -40.82 -0.32 9.01 16 47 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.19 1.79 7.50 -52.48 -0.39 1.40 16 LS Contribution 403.51 15.07 6.08 6.08 Total: -1.00 -35.08 403.51 -7.07 -42.15 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -7.31 Total: 15.33 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -0.91 Total: 9.26 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: -0.08 Total: -64.45 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: 0.18 Total: -24.39 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.08 -7.07 -42.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731630283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.169 kcal (2) G-P(sol) polarization free energy of solvation -35.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds