Wall clock time and date at job start Tue Mar 31 2020 20:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47153 * 2 1 4 4 N 1.46498 * 109.47429 * 120.00552 * 2 1 3 5 5 C 1.34264 * 125.75124 * 274.99885 * 4 2 1 6 6 C 1.38036 * 107.41655 * 179.73823 * 5 4 2 7 7 C 1.47430 * 126.41596 * 179.97438 * 6 5 4 8 8 O 1.21606 * 119.99813 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00215 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00082 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47442 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46837 * 64.99757 * 11 10 9 13 13 C 1.52995 * 109.47589 * 185.00341 * 11 10 9 14 14 N 1.46901 * 109.47051 * 305.00367 * 11 10 9 15 15 C 1.46907 * 111.00179 * 154.99798 * 14 11 10 16 16 C 1.50700 * 109.47416 * 180.02562 * 15 14 11 17 17 O 1.21298 * 119.99385 * 359.97438 * 16 15 14 18 18 N 1.34766 * 120.00194 * 180.02562 * 16 15 14 19 19 C 1.37092 * 120.00202 * 179.97438 * 18 16 15 20 20 H 1.08005 * 120.00116 * 359.97438 * 19 18 16 21 21 C 1.38957 * 120.00384 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99537 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00117 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46821 * 90.00401 * 23 21 19 25 25 H 1.48498 * 109.47145 * 210.00135 * 23 21 19 26 26 H 1.48499 * 109.47157 * 330.00058 * 23 21 19 27 27 C 1.41294 * 107.17120 * 359.97438 * 6 5 4 28 28 N 1.30440 * 108.02337 * 0.02562 * 27 6 5 29 29 H 1.09002 * 109.46714 * 299.99430 * 1 2 3 30 30 H 1.08998 * 109.47470 * 59.99734 * 1 2 3 31 31 H 1.09005 * 109.47040 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46714 * 240.00569 * 2 1 3 33 33 H 1.09007 * 109.47395 * 300.00648 * 3 2 1 34 34 H 1.09004 * 109.47202 * 60.00259 * 3 2 1 35 35 H 1.09004 * 109.47438 * 180.02562 * 3 2 1 36 36 H 1.07998 * 126.29100 * 359.73741 * 5 4 2 37 37 H 0.97006 * 119.99684 * 0.02562 * 9 7 6 38 38 H 1.09003 * 109.47488 * 300.00495 * 10 9 7 39 39 H 1.09005 * 109.46987 * 60.00392 * 10 9 7 40 40 H 1.09001 * 109.47508 * 59.99827 * 13 11 10 41 41 H 1.09006 * 109.47387 * 180.02562 * 13 11 10 42 42 H 1.09005 * 109.46924 * 299.99621 * 13 11 10 43 43 H 1.00905 * 111.00058 * 31.04510 * 14 11 10 44 44 H 1.09003 * 109.46476 * 300.00120 * 15 14 11 45 45 H 1.08993 * 109.47149 * 59.99786 * 15 14 11 46 46 H 0.97005 * 120.00008 * 359.97438 * 18 16 15 47 47 H 0.97004 * 119.99918 * 179.97438 * 22 21 19 48 48 H 1.08003 * 125.98909 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1904 -0.1364 2.4068 6 6 2.6573 -1.1239 3.2508 7 6 2.9872 -0.9702 4.6794 8 8 2.8549 0.1104 5.2212 9 7 3.4354 -2.0275 5.3851 10 6 3.7637 -1.8746 6.8045 11 6 4.2458 -3.2147 7.3637 12 1 5.1815 -3.4948 6.8798 13 6 4.4698 -3.0873 8.8718 14 7 3.2327 -4.2464 7.1046 15 6 3.8409 -5.5830 7.0636 16 6 2.7735 -6.6126 6.7957 17 8 1.6196 -6.2669 6.6535 18 7 3.1009 -7.9174 6.7153 19 6 2.1299 -8.8541 6.4721 20 1 1.1024 -8.5464 6.3454 21 6 2.4675 -10.1995 6.3886 22 7 3.7176 -10.5739 6.5432 23 14 1.1442 -11.4758 6.0580 24 1 1.0044 -11.6757 4.5932 25 1 1.5244 -12.7603 6.6988 26 1 -0.1479 -11.0060 6.6192 27 6 2.7597 -2.3095 2.4891 28 7 2.3782 -2.0409 1.2710 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.9988 0.8929 2.6716 37 1 3.5412 -2.8894 4.9528 38 1 4.5515 -1.1298 6.9171 39 1 2.8771 -1.5509 7.3498 40 1 3.5341 -2.8072 9.3557 41 1 4.8137 -4.0419 9.2701 42 1 5.2216 -2.3218 9.0640 43 1 2.7286 -4.0522 6.2523 44 1 4.5869 -5.6185 6.2696 45 1 4.3182 -5.7945 8.0203 46 1 4.0237 -8.1939 6.8294 47 1 3.9533 -11.5131 6.4853 48 1 3.0959 -3.2697 2.8517 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731630283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:12 Heat of formation + Delta-G solvation = -26.969520 kcal Electronic energy + Delta-G solvation = -28549.216222 eV Core-core repulsion = 24446.574274 eV Total energy + Delta-G solvation = -4102.641948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.49448 -40.55316 -40.03457 -38.11160 -36.75772 -35.95949 -34.90350 -33.26322 -32.20543 -31.51231 -31.03821 -28.28386 -28.13150 -27.37057 -25.71775 -24.35908 -23.30186 -21.61659 -21.24080 -21.06388 -20.91840 -19.91149 -19.10955 -17.83246 -17.10447 -17.03616 -16.86481 -16.58339 -16.45355 -16.28915 -15.99902 -15.75121 -15.37661 -15.22512 -15.05886 -14.76110 -14.26698 -13.95503 -13.89715 -13.68511 -13.50398 -13.44639 -13.25037 -13.23708 -13.11588 -12.91430 -12.77540 -12.55027 -12.42278 -12.39616 -12.34161 -12.12022 -11.98080 -11.82588 -11.49174 -10.97555 -10.63984 -10.31951 -10.20768 -9.99572 -9.68722 -9.33847 -8.45500 -5.93540 0.49954 1.10235 1.31510 1.38300 1.42319 1.54677 2.07389 2.22894 2.30146 2.43393 2.90588 3.22292 3.37194 3.51703 3.70240 3.73510 3.82597 3.88226 4.02392 4.08102 4.21492 4.29689 4.31045 4.42938 4.48709 4.58957 4.61423 4.63799 4.68332 4.69706 4.77082 4.85010 4.89587 4.97248 5.09062 5.12723 5.17612 5.32001 5.38071 5.42578 5.50756 5.87267 5.90803 6.11802 6.38252 6.42047 6.54973 6.62086 7.14673 7.21796 7.58723 8.14322 8.71781 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.002452 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.218213 B =11418.390333 C =13696.914535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 C -0.162 4.162 4 N -0.350 5.350 5 C 0.136 3.864 6 C -0.317 4.317 7 C 0.599 3.401 8 O -0.586 6.586 9 N -0.721 5.721 10 C 0.125 3.875 11 C 0.078 3.922 12 H 0.070 0.930 13 C -0.137 4.137 14 N -0.681 5.681 15 C 0.064 3.936 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.572 5.572 19 C -0.332 4.332 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.275 1.275 27 C 0.080 3.920 28 N -0.324 5.324 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.047 0.953 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.205 0.795 37 H 0.404 0.596 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.343 0.657 44 H 0.073 0.927 45 H 0.105 0.895 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.561 23.054 -10.861 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 C -0.220 4.220 4 N -0.129 5.129 5 C -0.017 4.017 6 C -0.332 4.332 7 C 0.388 3.612 8 O -0.468 6.468 9 N -0.373 5.373 10 C 0.002 3.998 11 C -0.032 4.032 12 H 0.088 0.912 13 C -0.195 4.195 14 N -0.316 5.316 15 C -0.068 4.068 16 C 0.225 3.775 17 O -0.510 6.510 18 N -0.210 5.210 19 C -0.461 4.461 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.196 1.196 25 H -0.196 1.196 26 H -0.200 1.200 27 C -0.108 4.108 28 N -0.143 5.143 29 H 0.082 0.918 30 H 0.125 0.875 31 H 0.066 0.934 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.222 0.778 37 H 0.240 0.760 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.101 0.899 43 H 0.163 0.837 44 H 0.091 0.909 45 H 0.123 0.877 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.381 23.383 -11.240 26.053 hybrid contribution 0.358 -1.320 -0.129 1.374 sum 2.739 22.062 -11.368 24.970 Atomic orbital electron populations 1.22249 0.92439 1.02705 1.04644 1.21803 0.95744 0.93988 0.84358 1.22247 1.02105 0.92109 1.05503 1.49153 1.47639 1.06783 1.09326 1.23172 0.93987 1.00124 0.84418 1.20248 1.22100 0.95556 0.95316 1.17366 0.75395 0.83300 0.85134 1.90728 1.56223 1.27581 1.72291 1.45760 1.67422 1.12708 1.11392 1.21559 1.01196 0.97258 0.79806 1.21871 0.93661 0.89269 0.98361 0.91244 1.21748 1.02196 1.02556 0.93010 1.60126 1.27372 1.00280 1.43849 1.21622 0.93845 0.87979 1.03359 1.20912 0.90442 0.83783 0.82399 1.90510 1.22796 1.81018 1.56661 1.41917 1.10682 1.05192 1.63184 1.19631 0.91281 0.87595 1.47614 0.90479 1.25996 0.99252 0.99310 0.96662 1.69664 1.17885 1.18555 1.49912 0.84970 0.77789 0.77244 0.78605 1.19633 1.19568 1.19959 1.24342 0.96864 0.99335 0.90216 1.77157 1.21837 0.94167 1.21123 0.91802 0.87471 0.93418 0.87283 0.87183 0.90767 0.91853 0.77784 0.76009 0.89476 0.91949 0.92773 0.92266 0.89943 0.83681 0.90875 0.87675 0.76915 0.91336 0.78216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.52 71.98 0.69 -0.94 16 2 C 0.14 1.61 3.91 44.99 0.18 1.78 16 3 C -0.16 -0.97 8.82 71.98 0.64 -0.34 16 4 N -0.35 -6.67 3.50 -325.77 -1.14 -7.81 16 5 C 0.14 2.70 10.39 84.27 0.88 3.57 16 6 C -0.32 -7.55 6.13 -20.15 -0.12 -7.68 16 7 C 0.60 15.98 7.81 86.66 0.68 16.65 16 8 O -0.59 -18.93 16.90 -4.05 -0.07 -19.00 16 9 N -0.72 -16.58 4.98 -466.37 -2.32 -18.90 16 10 C 0.13 2.77 5.31 86.38 0.46 3.23 16 11 C 0.08 1.66 2.81 44.91 0.13 1.79 16 12 H 0.07 1.26 7.80 -2.39 -0.02 1.24 16 13 C -0.14 -2.69 9.41 71.98 0.68 -2.01 16 14 N -0.68 -20.29 5.93 -495.57 -2.94 -23.23 16 15 C 0.06 2.06 5.97 85.56 0.51 2.57 16 16 C 0.44 20.29 7.82 87.66 0.69 20.97 16 17 O -0.62 -34.22 15.78 -3.08 -0.05 -34.27 16 18 N -0.57 -28.84 5.29 -306.99 -1.62 -30.46 16 19 C -0.33 -18.73 9.68 84.04 0.81 -17.91 16 20 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 22 N -0.92 -49.22 13.05 21.66 0.28 -48.93 16 23 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 C 0.08 1.86 11.50 85.65 0.99 2.84 16 28 N -0.32 -7.95 12.50 -56.27 -0.70 -8.65 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 30 H 0.11 0.48 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 34 H 0.07 0.40 7.13 -2.39 -0.02 0.38 16 35 H 0.06 0.48 8.14 -2.39 -0.02 0.47 16 36 H 0.21 3.03 7.23 -2.91 -0.02 3.01 16 37 H 0.40 8.31 6.33 -92.70 -0.59 7.72 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 1.20 7.45 -2.38 -0.02 1.18 16 42 H 0.08 1.20 8.14 -2.38 -0.02 1.19 16 43 H 0.34 10.79 6.41 -89.69 -0.58 10.21 16 44 H 0.07 1.96 8.06 -2.39 -0.02 1.94 16 45 H 0.11 3.07 7.44 -2.39 -0.02 3.05 16 46 H 0.40 18.89 7.90 -92.70 -0.73 18.15 16 47 H 0.28 13.92 8.31 -92.71 -0.77 13.14 16 48 H 0.20 3.83 7.50 -2.91 -0.02 3.81 16 Total: -1.00 -76.87 403.51 0.23 -76.64 By element: Atomic # 1 Polarization: 46.14 SS G_CDS: -0.89 Total: 45.25 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: 7.65 Total: 24.35 kcal Atomic # 7 Polarization: -129.55 SS G_CDS: -8.44 Total: -137.99 kcal Atomic # 8 Polarization: -53.15 SS G_CDS: -0.12 Total: -53.26 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -76.87 0.23 -76.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731630283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.671 kcal (2) G-P(sol) polarization free energy of solvation -76.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds