Wall clock time and date at job start Tue Mar 31 2020 20:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46930 * 2 1 4 4 N 1.46498 * 109.47429 * 120.00698 * 2 1 3 5 5 C 1.34264 * 125.75124 * 274.99885 * 4 2 1 6 6 C 1.38036 * 107.41655 * 179.73823 * 5 4 2 7 7 C 1.47430 * 126.41617 * 180.02562 * 6 5 4 8 8 O 1.21606 * 119.99827 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00234 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00101 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47083 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47328 * 294.99399 * 11 10 9 13 13 C 1.53003 * 109.47200 * 174.99903 * 11 10 9 14 14 N 1.46904 * 109.47210 * 55.00102 * 11 10 9 15 15 C 1.46900 * 110.99942 * 205.00011 * 14 11 10 16 16 C 1.50695 * 109.47203 * 179.97438 * 15 14 11 17 17 O 1.21293 * 119.99809 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00353 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00432 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99745 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00378 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99726 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00200 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47137 * 90.00106 * 23 21 19 25 25 H 1.48500 * 109.46802 * 210.00303 * 23 21 19 26 26 H 1.48497 * 109.46864 * 329.99915 * 23 21 19 27 27 C 1.41294 * 107.17120 * 359.97438 * 6 5 4 28 28 N 1.30440 * 108.02337 * 0.02562 * 27 6 5 29 29 H 1.09002 * 109.46714 * 299.99284 * 1 2 3 30 30 H 1.08998 * 109.47470 * 59.99587 * 1 2 3 31 31 H 1.09005 * 109.47040 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46714 * 240.00716 * 2 1 3 33 33 H 1.09004 * 109.47214 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47381 * 300.00467 * 3 2 1 35 35 H 1.09002 * 109.46838 * 60.00791 * 3 2 1 36 36 H 1.07998 * 126.29078 * 359.71108 * 5 4 2 37 37 H 0.97006 * 119.99655 * 359.97438 * 9 7 6 38 38 H 1.08997 * 109.47324 * 299.99528 * 10 9 7 39 39 H 1.08999 * 109.47560 * 59.99618 * 10 9 7 40 40 H 1.09001 * 109.47016 * 300.00146 * 13 11 10 41 41 H 1.09003 * 109.47283 * 59.99783 * 13 11 10 42 42 H 1.08996 * 109.47413 * 179.97438 * 13 11 10 43 43 H 1.00897 * 110.99649 * 328.95100 * 14 11 10 44 44 H 1.09003 * 109.46944 * 299.99541 * 15 14 11 45 45 H 1.09001 * 109.47059 * 59.99276 * 15 14 11 46 46 H 0.97003 * 119.99421 * 359.97438 * 18 16 15 47 47 H 0.97001 * 119.99644 * 180.02562 * 22 21 19 48 48 H 1.08002 * 125.98920 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1904 -0.1364 2.4068 6 6 2.6573 -1.1239 3.2507 7 6 2.9862 -0.9706 4.6797 8 8 2.8530 0.1098 5.2217 9 7 3.4345 -2.0278 5.3852 10 6 3.7619 -1.8753 6.8050 11 6 4.2431 -3.2156 7.3642 12 1 3.4265 -3.9368 7.3326 13 6 4.7027 -3.0289 8.8116 14 7 5.3647 -3.7098 6.5543 15 6 5.4733 -5.1722 6.6421 16 6 6.6316 -5.6414 5.8001 17 8 7.3005 -4.8367 5.1867 18 7 6.9236 -6.9551 5.7277 19 6 7.9777 -7.3819 4.9620 20 1 8.5738 -6.6654 4.4165 21 6 8.2791 -8.7363 4.8878 22 7 7.5533 -9.6082 5.5512 23 14 9.7149 -9.3179 3.8439 24 1 10.9491 -9.3424 4.6694 25 1 9.4340 -10.6835 3.3327 26 1 9.9029 -8.3900 2.6999 27 6 2.7597 -2.3096 2.4890 28 7 2.3782 -2.0409 1.2709 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.9991 0.8930 2.6715 37 1 3.5404 -2.8897 4.9529 38 1 4.5493 -1.1302 6.9183 39 1 2.8748 -1.5521 7.3498 40 1 5.5193 -2.3076 8.8433 41 1 3.8705 -2.6622 9.4126 42 1 5.0451 -3.9838 9.2102 43 1 5.2770 -3.4107 5.5947 44 1 5.6370 -5.4626 7.6799 45 1 4.5521 -5.6274 6.2784 46 1 6.3883 -7.5986 6.2180 47 1 7.7640 -10.5536 5.4997 48 1 3.0959 -3.2698 2.8516 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731630284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:16 Heat of formation + Delta-G solvation = 0.038415 kcal Electronic energy + Delta-G solvation = -28536.971577 eV Core-core repulsion = 24435.500781 eV Total energy + Delta-G solvation = -4101.470796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.67173 -39.47043 -38.35030 -36.88608 -36.17227 -34.09013 -33.66833 -31.35908 -30.99319 -30.71643 -30.18739 -27.90038 -26.80792 -26.13592 -24.07447 -23.53658 -22.44092 -20.62654 -20.36407 -20.13875 -19.30938 -18.26784 -17.85891 -16.51455 -16.06652 -16.02441 -15.77950 -15.48299 -15.26639 -15.17230 -14.65521 -14.46415 -14.34227 -13.95878 -13.84711 -13.42873 -13.38865 -13.17029 -12.84471 -12.73577 -12.70500 -12.52189 -12.44213 -11.94956 -11.87685 -11.77815 -11.71414 -11.64171 -11.40073 -11.22173 -11.06968 -10.82540 -10.39173 -10.21638 -9.92920 -9.83280 -9.50940 -9.20309 -8.82616 -8.46510 -8.11127 -7.96217 -6.41852 -3.82541 1.34012 1.99872 2.01417 3.16988 3.18367 3.26973 3.32850 3.40913 3.89913 3.95375 4.06791 4.29049 4.29803 4.43041 4.48938 4.52942 4.71088 4.89647 4.92701 4.98177 5.01063 5.10630 5.19328 5.21162 5.25832 5.27732 5.32995 5.48942 5.51228 5.56730 5.59893 5.70910 5.80114 5.81854 5.97536 6.02045 6.18043 6.22380 6.30695 6.42824 6.57517 7.17699 7.30682 7.46215 7.55399 7.60087 8.06202 8.22066 8.61005 9.17961 9.54038 10.05427 10.75826 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.002422 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.087658 B =11557.862135 C =13732.710621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.150 3.850 3 C -0.168 4.168 4 N -0.356 5.356 5 C 0.129 3.871 6 C -0.295 4.295 7 C 0.600 3.400 8 O -0.554 6.554 9 N -0.727 5.727 10 C 0.121 3.879 11 C 0.071 3.929 12 H 0.049 0.951 13 C -0.138 4.138 14 N -0.664 5.664 15 C 0.049 3.951 16 C 0.439 3.561 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.084 3.916 28 N -0.294 5.294 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.185 0.815 37 H 0.398 0.602 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.348 0.652 44 H 0.088 0.912 45 H 0.044 0.956 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.945 17.308 -5.143 24.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.049 3.951 3 C -0.226 4.226 4 N -0.135 5.135 5 C -0.022 4.022 6 C -0.310 4.310 7 C 0.388 3.612 8 O -0.432 6.432 9 N -0.379 5.379 10 C -0.003 4.003 11 C -0.039 4.039 12 H 0.067 0.933 13 C -0.196 4.196 14 N -0.299 5.299 15 C -0.084 4.084 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.104 4.104 28 N -0.112 5.112 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.202 0.798 37 H 0.233 0.767 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.169 0.831 44 H 0.106 0.894 45 H 0.062 0.938 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -16.335 18.114 -5.997 25.118 hybrid contribution -0.131 -1.349 -0.073 1.357 sum -16.466 16.765 -6.071 24.271 Atomic orbital electron populations 1.22256 0.93202 1.03578 1.03354 1.21419 0.95096 0.92954 0.85625 1.22250 1.02715 0.93679 1.04004 1.48809 1.48702 1.07543 1.08474 1.22830 0.95383 0.99472 0.84564 1.20224 1.20262 0.94751 0.95744 1.17169 0.75921 0.83539 0.84616 1.90756 1.54683 1.26278 1.71530 1.45794 1.67946 1.12797 1.11412 1.21583 1.00767 0.97789 0.80116 1.21818 0.92089 0.94640 0.95391 0.93317 1.21735 1.01362 1.02833 0.93691 1.60120 1.43222 1.10263 1.16343 1.21758 0.97277 0.88110 1.01208 1.19804 0.87873 0.83339 0.86523 1.90537 1.53493 1.53549 1.49006 1.41863 1.29240 1.05492 1.43390 1.19697 1.07150 0.92004 1.23962 0.87928 1.25260 0.98996 0.95661 0.98028 1.69613 1.39764 1.02704 1.42229 0.85863 0.80713 0.77867 0.79888 1.20394 1.20949 1.19416 1.24120 0.96996 0.98954 0.90363 1.77221 1.20937 0.92583 1.20491 0.91709 0.90159 0.91398 0.87436 0.91128 0.89614 0.91250 0.79825 0.76717 0.90281 0.90813 0.91504 0.92501 0.92017 0.83090 0.89402 0.93835 0.77474 0.91883 0.79348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 9.52 37.16 0.35 -0.48 16 2 C 0.15 0.95 3.91 -67.93 -0.27 0.68 16 3 C -0.17 -0.73 8.83 37.16 0.33 -0.40 16 4 N -0.36 -3.49 3.50 -54.31 -0.19 -3.68 16 5 C 0.13 1.32 10.39 -16.56 -0.17 1.15 16 6 C -0.29 -3.53 6.13 -105.07 -0.64 -4.17 16 7 C 0.60 8.04 7.81 -12.52 -0.10 7.94 16 8 O -0.55 -8.95 16.90 5.27 0.09 -8.86 16 9 N -0.73 -8.58 4.98 -61.39 -0.31 -8.89 16 10 C 0.12 1.41 5.31 -4.05 -0.02 1.39 16 11 C 0.07 0.83 2.81 -67.71 -0.19 0.64 16 12 H 0.05 0.53 7.80 -51.93 -0.40 0.12 16 13 C -0.14 -1.50 9.41 37.16 0.35 -1.15 16 14 N -0.66 -10.26 5.93 -107.99 -0.64 -10.90 16 15 C 0.05 0.83 5.96 -4.98 -0.03 0.80 16 16 C 0.44 10.15 7.82 -10.99 -0.09 10.07 16 17 O -0.58 -15.62 15.78 5.55 0.09 -15.53 16 18 N -0.56 -14.06 5.29 -10.97 -0.06 -14.12 16 19 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 23 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 C 0.08 0.97 11.50 -16.98 -0.20 0.78 16 28 N -0.29 -3.60 12.50 30.86 0.39 -3.21 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.27 7.13 -51.93 -0.37 -0.10 16 36 H 0.18 1.47 7.23 -52.49 -0.38 1.09 16 37 H 0.40 4.23 6.32 -40.82 -0.26 3.97 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 43 H 0.35 5.55 6.41 -39.29 -0.25 5.30 16 44 H 0.09 1.38 7.44 -51.93 -0.39 1.00 16 45 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 46 H 0.39 9.34 7.90 -40.82 -0.32 9.01 16 47 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.19 1.79 7.50 -52.49 -0.39 1.40 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -35.07 403.50 -7.07 -42.15 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -7.31 Total: 15.29 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -0.91 Total: 9.31 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: -0.08 Total: -64.46 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: 0.18 Total: -24.39 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.07 -7.07 -42.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731630284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.185 kcal (2) G-P(sol) polarization free energy of solvation -35.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds