Wall clock time and date at job start Tue Mar 31 2020 20:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46930 * 2 1 4 4 N 1.46498 * 109.47429 * 120.00698 * 2 1 3 5 5 C 1.34264 * 125.75124 * 274.99885 * 4 2 1 6 6 C 1.38036 * 107.41655 * 179.73823 * 5 4 2 7 7 C 1.47430 * 126.41617 * 180.02562 * 6 5 4 8 8 O 1.21606 * 119.99827 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00234 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00101 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47083 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47328 * 294.99399 * 11 10 9 13 13 C 1.53003 * 109.47200 * 174.99903 * 11 10 9 14 14 N 1.46904 * 109.47210 * 55.00102 * 11 10 9 15 15 C 1.46900 * 110.99942 * 205.00011 * 14 11 10 16 16 C 1.50695 * 109.47203 * 179.97438 * 15 14 11 17 17 O 1.21293 * 119.99809 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00353 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00432 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99745 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00378 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99726 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00200 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47137 * 90.00106 * 23 21 19 25 25 H 1.48500 * 109.46802 * 210.00303 * 23 21 19 26 26 H 1.48497 * 109.46864 * 329.99915 * 23 21 19 27 27 C 1.41294 * 107.17120 * 359.97438 * 6 5 4 28 28 N 1.30440 * 108.02337 * 0.02562 * 27 6 5 29 29 H 1.09002 * 109.46714 * 299.99284 * 1 2 3 30 30 H 1.08998 * 109.47470 * 59.99587 * 1 2 3 31 31 H 1.09005 * 109.47040 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46714 * 240.00716 * 2 1 3 33 33 H 1.09004 * 109.47214 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47381 * 300.00467 * 3 2 1 35 35 H 1.09002 * 109.46838 * 60.00791 * 3 2 1 36 36 H 1.07998 * 126.29078 * 359.71108 * 5 4 2 37 37 H 0.97006 * 119.99655 * 359.97438 * 9 7 6 38 38 H 1.08997 * 109.47324 * 299.99528 * 10 9 7 39 39 H 1.08999 * 109.47560 * 59.99618 * 10 9 7 40 40 H 1.09001 * 109.47016 * 300.00146 * 13 11 10 41 41 H 1.09003 * 109.47283 * 59.99783 * 13 11 10 42 42 H 1.08996 * 109.47413 * 179.97438 * 13 11 10 43 43 H 1.00897 * 110.99649 * 328.95100 * 14 11 10 44 44 H 1.09003 * 109.46944 * 299.99541 * 15 14 11 45 45 H 1.09001 * 109.47059 * 59.99276 * 15 14 11 46 46 H 0.97003 * 119.99421 * 359.97438 * 18 16 15 47 47 H 0.97001 * 119.99644 * 180.02562 * 22 21 19 48 48 H 1.08002 * 125.98920 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1904 -0.1364 2.4068 6 6 2.6573 -1.1239 3.2507 7 6 2.9862 -0.9706 4.6797 8 8 2.8530 0.1098 5.2217 9 7 3.4345 -2.0278 5.3852 10 6 3.7619 -1.8753 6.8050 11 6 4.2431 -3.2156 7.3642 12 1 3.4265 -3.9368 7.3326 13 6 4.7027 -3.0289 8.8116 14 7 5.3647 -3.7098 6.5543 15 6 5.4733 -5.1722 6.6421 16 6 6.6316 -5.6414 5.8001 17 8 7.3005 -4.8367 5.1867 18 7 6.9236 -6.9551 5.7277 19 6 7.9777 -7.3819 4.9620 20 1 8.5738 -6.6654 4.4165 21 6 8.2791 -8.7363 4.8878 22 7 7.5533 -9.6082 5.5512 23 14 9.7149 -9.3179 3.8439 24 1 10.9491 -9.3424 4.6694 25 1 9.4340 -10.6835 3.3327 26 1 9.9029 -8.3900 2.6999 27 6 2.7597 -2.3096 2.4890 28 7 2.3782 -2.0409 1.2709 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.9991 0.8930 2.6715 37 1 3.5404 -2.8897 4.9529 38 1 4.5493 -1.1302 6.9183 39 1 2.8748 -1.5521 7.3498 40 1 5.5193 -2.3076 8.8433 41 1 3.8705 -2.6622 9.4126 42 1 5.0451 -3.9838 9.2102 43 1 5.2770 -3.4107 5.5947 44 1 5.6370 -5.4626 7.6799 45 1 4.5521 -5.6274 6.2784 46 1 6.3883 -7.5986 6.2180 47 1 7.7640 -10.5536 5.4997 48 1 3.0959 -3.2698 2.8516 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731630284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:15 Heat of formation + Delta-G solvation = -26.938501 kcal Electronic energy + Delta-G solvation = -28538.141384 eV Core-core repulsion = 24435.500781 eV Total energy + Delta-G solvation = -4102.640603 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.49458 -40.55344 -40.03469 -38.11164 -36.75723 -35.95890 -34.90361 -33.26169 -32.20567 -31.51164 -31.03811 -28.28316 -28.13106 -27.36998 -25.71770 -24.35805 -23.30219 -21.61686 -21.24108 -21.06319 -20.91873 -19.91065 -19.10956 -17.83063 -17.10497 -17.05248 -16.86727 -16.53348 -16.48115 -16.27066 -16.02311 -15.75026 -15.38527 -15.24944 -15.00997 -14.77479 -14.26475 -13.97289 -13.87699 -13.68440 -13.50601 -13.45289 -13.26261 -13.21671 -13.11347 -12.91577 -12.77517 -12.54890 -12.42001 -12.39440 -12.34623 -12.11615 -11.97980 -11.82645 -11.49196 -10.97548 -10.63941 -10.31929 -10.20771 -9.99483 -9.68676 -9.33880 -8.45397 -5.93490 0.50042 1.10328 1.31302 1.38501 1.42461 1.54765 2.07446 2.22909 2.30252 2.43378 2.90574 3.22409 3.36878 3.51739 3.70219 3.73477 3.82687 3.88513 4.02357 4.08208 4.21499 4.29705 4.31250 4.42931 4.48746 4.59409 4.61263 4.63732 4.68503 4.69988 4.76924 4.85359 4.89609 4.97259 5.09100 5.12491 5.17802 5.31960 5.38060 5.42675 5.50769 5.87237 5.90852 6.11848 6.38276 6.42026 6.54953 6.62167 7.14745 7.21778 7.58763 8.14350 8.71880 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.002422 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.087658 B =11557.862135 C =13732.710621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 C -0.163 4.163 4 N -0.350 5.350 5 C 0.136 3.864 6 C -0.317 4.317 7 C 0.599 3.401 8 O -0.586 6.586 9 N -0.721 5.721 10 C 0.125 3.875 11 C 0.078 3.922 12 H 0.070 0.930 13 C -0.137 4.137 14 N -0.681 5.681 15 C 0.064 3.936 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.331 4.331 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.274 1.274 27 C 0.080 3.920 28 N -0.324 5.324 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.050 0.950 32 H 0.107 0.893 33 H 0.058 0.942 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.205 0.795 37 H 0.404 0.596 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.343 0.657 44 H 0.105 0.895 45 H 0.073 0.927 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.194 17.580 -5.225 25.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.040 3.960 3 C -0.221 4.221 4 N -0.129 5.129 5 C -0.017 4.017 6 C -0.332 4.332 7 C 0.388 3.612 8 O -0.468 6.468 9 N -0.373 5.373 10 C 0.002 3.998 11 C -0.032 4.032 12 H 0.087 0.913 13 C -0.195 4.195 14 N -0.316 5.316 15 C -0.068 4.068 16 C 0.225 3.775 17 O -0.510 6.510 18 N -0.210 5.210 19 C -0.461 4.461 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.199 1.199 27 C -0.108 4.108 28 N -0.143 5.143 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.069 0.931 32 H 0.125 0.875 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.222 0.778 37 H 0.240 0.760 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.163 0.837 44 H 0.123 0.877 45 H 0.091 0.909 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -17.608 18.354 -6.071 26.149 hybrid contribution 0.216 -1.356 -0.078 1.375 sum -17.392 16.998 -6.149 25.084 Atomic orbital electron populations 1.22226 0.91950 1.02862 1.04691 1.21807 0.96074 0.93792 0.84314 1.22257 1.01930 0.92370 1.05569 1.49150 1.47637 1.06820 1.09283 1.23171 0.94082 1.00054 0.84399 1.20247 1.21994 0.95596 0.95378 1.17366 0.75452 0.83257 0.85120 1.90728 1.56413 1.27423 1.72259 1.45761 1.67198 1.12789 1.11537 1.21557 1.00749 0.97371 0.80138 1.21872 0.91425 0.94769 0.95101 0.91252 1.21748 1.01969 1.02461 0.93331 1.60125 1.45613 1.09339 1.16536 1.21621 0.95381 0.89160 1.00646 1.20911 0.88553 0.82286 0.85779 1.90508 1.55330 1.54447 1.50687 1.41921 1.29050 1.06429 1.43590 1.19630 1.08627 0.92313 1.25536 0.90472 1.25997 1.01163 0.95264 0.98803 1.69667 1.40640 1.03076 1.42653 0.84968 0.77817 0.77620 0.78194 1.19771 1.19532 1.19854 1.24342 0.96725 0.99482 0.90211 1.77158 1.21959 0.94241 1.20931 0.91583 0.87581 0.93091 0.87524 0.92307 0.87144 0.90600 0.77784 0.76011 0.91938 0.89485 0.92767 0.89949 0.92265 0.83681 0.87672 0.90880 0.76920 0.91341 0.78220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.52 71.98 0.69 -0.67 16 2 C 0.14 1.60 3.91 44.99 0.18 1.78 16 3 C -0.16 -1.12 8.83 71.98 0.64 -0.49 16 4 N -0.35 -6.68 3.50 -325.75 -1.14 -7.82 16 5 C 0.14 2.70 10.39 84.27 0.88 3.57 16 6 C -0.32 -7.56 6.13 -20.15 -0.12 -7.68 16 7 C 0.60 15.98 7.81 86.66 0.68 16.66 16 8 O -0.59 -18.93 16.90 -4.05 -0.07 -19.00 16 9 N -0.72 -16.59 4.98 -466.38 -2.32 -18.91 16 10 C 0.13 2.77 5.31 86.38 0.46 3.23 16 11 C 0.08 1.66 2.81 44.92 0.13 1.79 16 12 H 0.07 1.26 7.80 -2.39 -0.02 1.24 16 13 C -0.14 -2.69 9.41 71.98 0.68 -2.01 16 14 N -0.68 -20.28 5.93 -495.57 -2.94 -23.21 16 15 C 0.06 2.06 5.96 85.56 0.51 2.57 16 16 C 0.44 20.28 7.82 87.66 0.69 20.97 16 17 O -0.62 -34.20 15.78 -3.07 -0.05 -34.24 16 18 N -0.57 -28.85 5.29 -306.99 -1.62 -30.47 16 19 C -0.33 -18.71 9.68 84.04 0.81 -17.90 16 20 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 22 N -0.92 -49.23 13.05 21.66 0.28 -48.95 16 23 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 C 0.08 1.86 11.50 85.65 0.99 2.84 16 28 N -0.32 -7.96 12.50 -56.27 -0.70 -8.66 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.08 0.44 7.13 -2.39 -0.02 0.42 16 36 H 0.21 3.04 7.23 -2.91 -0.02 3.01 16 37 H 0.40 8.31 6.32 -92.70 -0.59 7.73 16 38 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.06 1.20 7.45 -2.39 -0.02 1.18 16 43 H 0.34 10.78 6.41 -89.70 -0.57 10.21 16 44 H 0.11 3.07 7.44 -2.39 -0.02 3.05 16 45 H 0.07 1.95 8.06 -2.39 -0.02 1.94 16 46 H 0.40 18.88 7.90 -92.71 -0.73 18.15 16 47 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 48 H 0.20 3.84 7.50 -2.91 -0.02 3.82 16 Total: -1.00 -76.80 403.50 0.23 -76.58 By element: Atomic # 1 Polarization: 46.10 SS G_CDS: -0.89 Total: 45.21 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: 7.65 Total: 24.47 kcal Atomic # 7 Polarization: -129.58 SS G_CDS: -8.44 Total: -138.02 kcal Atomic # 8 Polarization: -53.13 SS G_CDS: -0.12 Total: -53.24 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -76.80 0.23 -76.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731630284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.639 kcal (2) G-P(sol) polarization free energy of solvation -76.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds