Wall clock time and date at job start Tue Mar 31 2020 20:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47262 * 2 1 4 4 C 1.53006 * 109.46914 * 239.99864 * 2 1 3 5 5 N 1.46503 * 109.47152 * 185.00121 * 4 2 1 6 6 C 1.34770 * 119.99979 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00207 * 0.02562 * 6 5 4 8 8 C 1.50712 * 119.99716 * 179.97438 * 6 5 4 9 9 C 1.52999 * 109.46513 * 66.00134 * 8 6 5 10 10 C 1.52994 * 109.47162 * 306.00321 * 8 6 5 11 11 C 1.50693 * 109.46861 * 185.99840 * 8 6 5 12 12 C 1.34670 * 126.59386 * 237.57665 * 11 8 6 13 13 N 1.34127 * 108.02285 * 179.81756 * 12 11 8 14 14 C 1.30496 * 109.25721 * 0.36701 * 13 12 11 15 15 N 1.35047 * 108.69723 * 359.63332 * 14 13 12 16 16 H 0.97000 * 126.39505 * 180.25287 * 15 14 13 17 17 N 1.46897 * 109.47068 * 120.00530 * 2 1 3 18 18 C 1.46907 * 110.99290 * 274.99789 * 17 2 1 19 19 C 1.50709 * 109.46622 * 180.02562 * 18 17 2 20 20 O 1.21282 * 120.00162 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99586 * 180.02562 * 19 18 17 22 22 C 1.37098 * 119.99794 * 179.97438 * 21 19 18 23 23 H 1.07997 * 120.00152 * 0.02562 * 22 21 19 24 24 C 1.38947 * 119.99993 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00309 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00074 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46944 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47227 * 120.00620 * 26 24 22 29 29 H 1.48503 * 109.47040 * 240.00465 * 26 24 22 30 30 H 1.08993 * 109.47416 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46936 * 300.00043 * 1 2 3 32 32 H 1.09004 * 109.46788 * 59.99897 * 1 2 3 33 33 H 1.09004 * 109.47144 * 65.00467 * 4 2 1 34 34 H 1.08995 * 109.47512 * 305.00019 * 4 2 1 35 35 H 0.97007 * 119.99412 * 359.97438 * 5 4 2 36 36 H 1.09003 * 109.46784 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.47634 * 299.99469 * 9 8 6 38 38 H 1.08997 * 109.47424 * 59.99925 * 9 8 6 39 39 H 1.09002 * 109.47055 * 299.99534 * 10 8 6 40 40 H 1.08996 * 109.47863 * 59.99940 * 10 8 6 41 41 H 1.09005 * 109.46672 * 180.02562 * 10 8 6 42 42 H 1.07998 * 125.98791 * 359.97438 * 12 11 8 43 43 H 1.07998 * 125.65140 * 179.88972 * 14 13 12 44 44 H 1.00894 * 111.00078 * 151.04759 * 17 2 1 45 45 H 1.09003 * 109.47087 * 299.99714 * 18 17 2 46 46 H 1.08997 * 109.47187 * 60.00102 * 18 17 2 47 47 H 0.96998 * 120.00195 * 359.97438 * 21 19 18 48 48 H 0.96999 * 120.00487 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8265 -1.1907 6 6 4.1730 -1.4284 -2.1912 7 8 3.5700 -1.8826 -3.1404 8 6 5.6750 -1.5361 -2.1311 9 6 6.0747 -2.4504 -0.9713 10 6 6.2777 -0.1464 -1.9161 11 6 6.1895 -2.1121 -3.4251 12 6 6.9323 -3.2262 -3.5688 13 7 7.1777 -3.3955 -4.8765 14 6 6.6219 -2.4243 -5.5480 15 7 5.9923 -1.6030 -4.6804 16 1 5.4932 -0.8021 -4.9048 17 7 2.0196 -0.6926 1.1994 18 6 2.0824 0.2226 2.3468 19 6 2.5885 -0.5216 3.5557 20 8 2.8687 -1.6985 3.4699 21 7 2.7286 0.1205 4.7323 22 6 3.1885 -0.5566 5.8322 23 1 3.4388 -1.6044 5.7556 24 6 3.3334 0.1054 7.0451 25 7 3.0293 1.3805 7.1383 26 14 3.9607 -0.8169 8.5436 27 1 4.2302 -2.2306 8.1776 28 1 5.2141 -0.1833 9.0260 29 1 2.9368 -0.7699 9.6182 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.7516 -0.1583 -2.1370 34 1 1.6054 -1.7198 -1.2952 35 1 3.9824 -0.4622 -0.4319 36 1 7.1610 -2.5279 -0.9275 37 1 5.7026 -2.0338 -0.0353 38 1 5.6452 -3.4404 -1.1244 39 1 5.9930 0.5050 -2.7424 40 1 5.9057 0.2703 -0.9801 41 1 7.3642 -0.2243 -1.8730 42 1 7.2689 -3.8717 -2.7711 43 1 6.6559 -2.3005 -6.6203 44 1 2.9172 -1.1205 1.0286 45 1 2.7589 1.0462 2.1181 46 1 1.0870 0.6163 2.5524 47 1 2.5041 1.0616 4.8010 48 1 3.1302 1.8426 7.9851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731632908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:47 Heat of formation + Delta-G solvation = -20.043484 kcal Electronic energy + Delta-G solvation = -29308.311531 eV Core-core repulsion = 25205.969919 eV Total energy + Delta-G solvation = -4102.341612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.39261 -40.20906 -38.52550 -37.12742 -35.69691 -34.20063 -33.76019 -32.58194 -31.37411 -30.88927 -28.94618 -27.64474 -26.91629 -26.21833 -24.15996 -23.80665 -21.94680 -21.10255 -20.76797 -20.01156 -19.39451 -18.47192 -17.94019 -17.00645 -16.48695 -16.19188 -15.73363 -15.40980 -15.20368 -14.75932 -14.60918 -14.45564 -14.39083 -14.18406 -13.94290 -13.67279 -13.53111 -13.18918 -12.89864 -12.69130 -12.63445 -12.55929 -12.39852 -11.98329 -11.95861 -11.82382 -11.72334 -11.60002 -11.48134 -11.14640 -10.95027 -10.38711 -10.28089 -10.25761 -10.13415 -9.94735 -9.58127 -9.34671 -8.57630 -8.55531 -8.21523 -8.02886 -6.47840 -3.88815 1.81699 2.34200 2.83202 2.91760 3.07512 3.12151 3.23549 3.30507 3.82264 3.96370 4.11598 4.21161 4.31677 4.50670 4.53710 4.56855 4.69716 4.89266 5.08943 5.13101 5.17804 5.20357 5.20664 5.22455 5.37369 5.41906 5.43561 5.55505 5.59705 5.63132 5.69126 5.70231 5.83531 5.87663 5.90105 6.05117 6.06879 6.16964 6.27641 6.53694 7.05681 7.12110 7.20028 7.47770 7.49848 7.87894 7.90747 7.99903 8.54108 9.11778 9.47234 9.98073 10.69767 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014541 B = 0.002362 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.089107 B =11853.646184 C =13201.806747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 H 0.049 0.951 4 C 0.118 3.882 5 N -0.726 5.726 6 C 0.523 3.477 7 O -0.534 6.534 8 C -0.005 4.005 9 C -0.141 4.141 10 C -0.143 4.143 11 C 0.007 3.993 12 C -0.017 4.017 13 N -0.495 5.495 14 C 0.183 3.817 15 N -0.553 5.553 16 H 0.417 0.583 17 N -0.663 5.663 18 C 0.049 3.951 19 C 0.439 3.561 20 O -0.582 6.582 21 N -0.562 5.562 22 C -0.299 4.299 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.281 1.281 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.400 0.600 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.170 0.830 43 H 0.206 0.794 44 H 0.347 0.653 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.534 2.990 -20.696 21.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.066 0.934 4 C -0.006 4.006 5 N -0.379 5.379 6 C 0.308 3.692 7 O -0.410 6.410 8 C -0.010 4.010 9 C -0.199 4.199 10 C -0.201 4.201 11 C -0.110 4.110 12 C -0.165 4.165 13 N -0.214 5.214 14 C -0.101 4.101 15 N -0.154 5.154 16 H 0.254 0.746 17 N -0.298 5.298 18 C -0.084 4.084 19 C 0.224 3.776 20 O -0.466 6.466 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.122 0.878 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.207 1.207 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.236 0.764 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.187 0.813 43 H 0.222 0.778 44 H 0.168 0.832 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.148 1.050 -21.445 21.700 hybrid contribution 0.290 2.075 1.250 2.440 sum 3.438 3.125 -20.195 20.722 Atomic orbital electron populations 1.21737 0.93319 1.03030 1.01574 1.21811 0.97215 0.95853 0.88984 0.93358 1.21633 0.79096 1.02158 0.97666 1.46046 1.08163 1.59890 1.23786 1.20443 0.89265 0.77235 0.82280 1.90716 1.70042 1.46880 1.33354 1.19250 0.91346 0.97852 0.92546 1.21884 1.03201 0.99438 0.95406 1.21941 1.02428 0.93292 1.02389 1.20453 1.05955 0.99140 0.85464 1.22074 1.03168 0.97221 0.94070 1.70282 1.23385 1.23291 1.04401 1.24902 0.98210 0.89488 0.97493 1.43091 1.41599 1.24071 1.06648 0.74563 1.60115 1.34775 1.32277 1.02673 1.21769 1.01538 0.93751 0.91309 1.19773 0.85170 0.88224 0.84450 1.90533 1.55322 1.16029 1.84716 1.41874 1.57618 1.12440 1.07969 1.19748 1.39870 0.96473 0.86762 0.87828 1.25270 0.97607 0.95779 0.99278 1.69614 1.48593 1.08884 1.27146 0.85803 0.78248 0.79656 0.80674 1.19172 1.20743 1.20713 0.91466 0.91901 0.92531 0.90884 0.90194 0.76450 0.90324 0.90637 0.90989 0.92484 0.91085 0.90481 0.81324 0.77755 0.83210 0.93890 0.89367 0.77485 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.41 37.16 0.35 -1.05 16 2 C 0.07 0.76 2.81 -67.71 -0.19 0.57 16 3 H 0.05 0.47 7.80 -51.93 -0.40 0.06 16 4 C 0.12 1.22 5.31 -4.04 -0.02 1.20 16 5 N -0.73 -7.15 4.82 -60.29 -0.29 -7.44 16 6 C 0.52 5.82 6.48 -10.98 -0.07 5.75 16 7 O -0.53 -7.75 15.80 5.56 0.09 -7.66 16 8 C -0.01 -0.05 0.86 -156.81 -0.13 -0.18 16 9 C -0.14 -1.22 7.36 37.16 0.27 -0.95 16 10 C -0.14 -0.98 8.30 37.15 0.31 -0.68 16 11 C 0.01 0.07 5.04 -81.60 -0.41 -0.34 16 12 C -0.02 -0.20 10.84 -17.81 -0.19 -0.39 16 13 N -0.49 -6.17 11.25 -14.67 -0.16 -6.34 16 14 C 0.18 1.72 13.04 -90.37 -1.18 0.54 16 15 N -0.55 -5.00 5.83 -10.30 -0.06 -5.06 16 16 H 0.42 2.91 8.96 -40.82 -0.37 2.54 16 17 N -0.66 -9.53 5.93 -107.98 -0.64 -10.17 16 18 C 0.05 0.78 5.97 -4.97 -0.03 0.75 16 19 C 0.44 9.74 7.82 -10.98 -0.09 9.65 16 20 O -0.58 -15.04 15.78 5.56 0.09 -14.95 16 21 N -0.56 -13.60 5.29 -10.96 -0.06 -13.66 16 22 C -0.30 -8.06 9.68 -14.93 -0.14 -8.21 16 23 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -23.81 13.05 55.50 0.72 -23.09 16 26 Si 0.93 20.52 29.55 -169.99 -5.02 15.49 16 27 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 28 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 29 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.40 3.52 6.30 -40.82 -0.26 3.26 16 36 H 0.08 0.57 7.88 -51.93 -0.41 0.16 16 37 H 0.07 0.64 8.00 -51.93 -0.42 0.23 16 38 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.43 7.25 -51.93 -0.38 0.06 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.17 1.69 7.33 -52.49 -0.38 1.31 16 43 H 0.21 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.35 5.08 6.41 -39.30 -0.25 4.82 16 45 H 0.04 0.59 8.06 -51.93 -0.42 0.17 16 46 H 0.09 1.32 7.43 -51.93 -0.39 0.93 16 47 H 0.39 9.05 7.90 -40.82 -0.32 8.72 16 48 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 398.23 15.07 6.00 6.00 Total: -1.00 -34.75 398.23 -8.23 -42.98 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -7.27 Total: 16.73 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -1.62 Total: 7.16 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: -0.49 Total: -65.75 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.18 Total: -22.61 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.75 -8.23 -42.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731632908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.932 kcal (2) G-P(sol) polarization free energy of solvation -34.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds