Wall clock time and date at job start Tue Mar 31 2020 20:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47262 * 2 1 4 4 C 1.53006 * 109.46914 * 239.99864 * 2 1 3 5 5 N 1.46503 * 109.47152 * 185.00121 * 4 2 1 6 6 C 1.34770 * 119.99979 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00207 * 0.02562 * 6 5 4 8 8 C 1.50712 * 119.99716 * 179.97438 * 6 5 4 9 9 C 1.52999 * 109.46513 * 66.00134 * 8 6 5 10 10 C 1.52994 * 109.47162 * 306.00321 * 8 6 5 11 11 C 1.50693 * 109.46861 * 185.99840 * 8 6 5 12 12 C 1.34670 * 126.59386 * 237.57665 * 11 8 6 13 13 N 1.34127 * 108.02285 * 179.81756 * 12 11 8 14 14 C 1.30496 * 109.25721 * 0.36701 * 13 12 11 15 15 N 1.35047 * 108.69723 * 359.63332 * 14 13 12 16 16 H 0.97000 * 126.39505 * 180.25287 * 15 14 13 17 17 N 1.46897 * 109.47068 * 120.00530 * 2 1 3 18 18 C 1.46907 * 110.99290 * 274.99789 * 17 2 1 19 19 C 1.50709 * 109.46622 * 180.02562 * 18 17 2 20 20 O 1.21282 * 120.00162 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99586 * 180.02562 * 19 18 17 22 22 C 1.37098 * 119.99794 * 179.97438 * 21 19 18 23 23 H 1.07997 * 120.00152 * 0.02562 * 22 21 19 24 24 C 1.38947 * 119.99993 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00309 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00074 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46944 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47227 * 120.00620 * 26 24 22 29 29 H 1.48503 * 109.47040 * 240.00465 * 26 24 22 30 30 H 1.08993 * 109.47416 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46936 * 300.00043 * 1 2 3 32 32 H 1.09004 * 109.46788 * 59.99897 * 1 2 3 33 33 H 1.09004 * 109.47144 * 65.00467 * 4 2 1 34 34 H 1.08995 * 109.47512 * 305.00019 * 4 2 1 35 35 H 0.97007 * 119.99412 * 359.97438 * 5 4 2 36 36 H 1.09003 * 109.46784 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.47634 * 299.99469 * 9 8 6 38 38 H 1.08997 * 109.47424 * 59.99925 * 9 8 6 39 39 H 1.09002 * 109.47055 * 299.99534 * 10 8 6 40 40 H 1.08996 * 109.47863 * 59.99940 * 10 8 6 41 41 H 1.09005 * 109.46672 * 180.02562 * 10 8 6 42 42 H 1.07998 * 125.98791 * 359.97438 * 12 11 8 43 43 H 1.07998 * 125.65140 * 179.88972 * 14 13 12 44 44 H 1.00894 * 111.00078 * 151.04759 * 17 2 1 45 45 H 1.09003 * 109.47087 * 299.99714 * 18 17 2 46 46 H 1.08997 * 109.47187 * 60.00102 * 18 17 2 47 47 H 0.96998 * 120.00195 * 359.97438 * 21 19 18 48 48 H 0.96999 * 120.00487 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8265 -1.1907 6 6 4.1730 -1.4284 -2.1912 7 8 3.5700 -1.8826 -3.1404 8 6 5.6750 -1.5361 -2.1311 9 6 6.0747 -2.4504 -0.9713 10 6 6.2777 -0.1464 -1.9161 11 6 6.1895 -2.1121 -3.4251 12 6 6.9323 -3.2262 -3.5688 13 7 7.1777 -3.3955 -4.8765 14 6 6.6219 -2.4243 -5.5480 15 7 5.9923 -1.6030 -4.6804 16 1 5.4932 -0.8021 -4.9048 17 7 2.0196 -0.6926 1.1994 18 6 2.0824 0.2226 2.3468 19 6 2.5885 -0.5216 3.5557 20 8 2.8687 -1.6985 3.4699 21 7 2.7286 0.1205 4.7323 22 6 3.1885 -0.5566 5.8322 23 1 3.4388 -1.6044 5.7556 24 6 3.3334 0.1054 7.0451 25 7 3.0293 1.3805 7.1383 26 14 3.9607 -0.8169 8.5436 27 1 4.2302 -2.2306 8.1776 28 1 5.2141 -0.1833 9.0260 29 1 2.9368 -0.7699 9.6182 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.7516 -0.1583 -2.1370 34 1 1.6054 -1.7198 -1.2952 35 1 3.9824 -0.4622 -0.4319 36 1 7.1610 -2.5279 -0.9275 37 1 5.7026 -2.0338 -0.0353 38 1 5.6452 -3.4404 -1.1244 39 1 5.9930 0.5050 -2.7424 40 1 5.9057 0.2703 -0.9801 41 1 7.3642 -0.2243 -1.8730 42 1 7.2689 -3.8717 -2.7711 43 1 6.6559 -2.3005 -6.6203 44 1 2.9172 -1.1205 1.0286 45 1 2.7589 1.0462 2.1181 46 1 1.0870 0.6163 2.5524 47 1 2.5041 1.0616 4.8010 48 1 3.1302 1.8426 7.9851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731632908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:46 Heat of formation + Delta-G solvation = -46.568789 kcal Electronic energy + Delta-G solvation = -29309.461754 eV Core-core repulsion = 25205.969919 eV Total energy + Delta-G solvation = -4103.491836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.15391 -41.09211 -40.15803 -38.27482 -36.48948 -35.96600 -34.90943 -33.36254 -33.25096 -32.01551 -29.68014 -28.29388 -28.15543 -27.39580 -25.71948 -24.65697 -22.72020 -21.90735 -21.67954 -21.13424 -20.75221 -19.91478 -19.27065 -17.96734 -17.62138 -17.14666 -16.93871 -16.72474 -16.35175 -16.06354 -15.79355 -15.57732 -15.32524 -15.12286 -15.09518 -14.86766 -14.43346 -14.27902 -13.94642 -13.72582 -13.49201 -13.42857 -13.37573 -13.25871 -13.08533 -12.93159 -12.81091 -12.65441 -12.55331 -12.37952 -12.27770 -12.10879 -11.88504 -11.49621 -11.09265 -10.92368 -10.81513 -10.32254 -10.21886 -9.99334 -9.36504 -9.35552 -8.45516 -5.93450 1.05991 1.37410 1.43615 1.47328 1.56881 2.02751 2.07577 2.23191 2.26826 2.30137 2.87674 3.22489 3.40439 3.49210 3.58187 3.71211 3.84984 3.88536 4.02050 4.16454 4.26240 4.39070 4.46815 4.49177 4.59719 4.61533 4.61659 4.62102 4.65945 4.75933 4.81200 4.87937 4.92423 5.04685 5.10782 5.14055 5.24617 5.30725 5.43044 5.44569 5.75236 5.89224 6.10280 6.32289 6.36618 6.53157 6.61937 7.05340 7.12028 7.14995 7.58849 8.14044 8.71872 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014541 B = 0.002362 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.089107 B =11853.646184 C =13201.806747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.079 3.921 3 H 0.072 0.928 4 C 0.123 3.877 5 N -0.717 5.717 6 C 0.522 3.478 7 O -0.571 6.571 8 C 0.002 3.998 9 C -0.142 4.142 10 C -0.140 4.140 11 C 0.002 3.998 12 C -0.042 4.042 13 N -0.535 5.535 14 C 0.188 3.812 15 N -0.548 5.548 16 H 0.427 0.573 17 N -0.681 5.681 18 C 0.064 3.936 19 C 0.437 3.563 20 O -0.622 6.622 21 N -0.573 5.573 22 C -0.329 4.329 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.989 3.011 27 H -0.274 1.274 28 H -0.271 1.271 29 H -0.273 1.273 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.407 0.593 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.172 0.828 43 H 0.242 0.758 44 H 0.343 0.657 45 H 0.075 0.925 46 H 0.104 0.896 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 4.853 -21.244 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 H 0.090 0.910 4 C 0.000 4.000 5 N -0.370 5.370 6 C 0.309 3.691 7 O -0.449 6.449 8 C -0.003 4.003 9 C -0.199 4.199 10 C -0.197 4.197 11 C -0.115 4.115 12 C -0.190 4.190 13 N -0.255 5.255 14 C -0.096 4.096 15 N -0.150 5.150 16 H 0.266 0.734 17 N -0.316 5.316 18 C -0.068 4.068 19 C 0.225 3.775 20 O -0.508 6.508 21 N -0.210 5.210 22 C -0.459 4.459 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.813 3.187 27 H -0.199 1.199 28 H -0.196 1.196 29 H -0.199 1.199 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.244 0.756 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.190 0.810 43 H 0.258 0.742 44 H 0.164 0.836 45 H 0.093 0.907 46 H 0.122 0.878 47 H 0.231 0.769 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.168 2.962 -21.982 22.405 hybrid contribution 0.238 1.465 1.339 1.999 sum 3.406 4.427 -20.643 21.385 Atomic orbital electron populations 1.21753 0.92820 1.02418 1.02639 1.21853 0.97451 0.96533 0.87219 0.91034 1.21564 0.79171 1.01197 0.98108 1.45986 1.08077 1.59285 1.23626 1.20784 0.90047 0.76474 0.81806 1.90698 1.70914 1.48496 1.34835 1.19235 0.89904 0.99166 0.92005 1.21897 1.04096 0.98607 0.95331 1.21952 1.02711 0.91793 1.03252 1.20612 1.05587 0.98945 0.86394 1.22286 1.04300 0.98098 0.94286 1.70250 1.25187 1.25060 1.05011 1.25634 0.96682 0.88408 0.98891 1.43108 1.41374 1.24334 1.06184 0.73368 1.60099 1.34842 1.32967 1.03717 1.21624 1.02607 0.93691 0.88891 1.20891 0.83179 0.87981 0.85445 1.90507 1.56571 1.18175 1.85592 1.41933 1.58290 1.12610 1.08198 1.19659 1.41808 0.95878 0.88565 0.90397 1.25980 0.97363 0.96590 1.01275 1.69664 1.48755 1.09616 1.28027 0.84921 0.78161 0.78103 0.77486 1.19871 1.19578 1.19884 0.92966 0.92237 0.90053 0.89489 0.92313 0.75616 0.88909 0.90490 0.92517 0.91732 0.90003 0.89847 0.81041 0.74182 0.83605 0.90735 0.87826 0.76942 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.41 71.98 0.68 -1.80 16 2 C 0.08 1.48 2.81 44.92 0.13 1.61 16 3 H 0.07 1.08 7.80 -2.39 -0.02 1.06 16 4 C 0.12 2.34 5.31 86.38 0.46 2.80 16 5 N -0.72 -13.06 4.82 -463.04 -2.23 -15.30 16 6 C 0.52 11.18 6.48 87.66 0.57 11.74 16 7 O -0.57 -16.32 15.80 -3.02 -0.05 -16.36 16 8 C 0.00 0.03 0.86 -53.67 -0.05 -0.02 16 9 C -0.14 -2.40 7.36 71.98 0.53 -1.87 16 10 C -0.14 -1.64 8.30 71.98 0.60 -1.05 16 11 C 0.00 0.04 5.04 40.95 0.21 0.25 16 12 C -0.04 -0.99 10.84 83.52 0.91 -0.09 16 13 N -0.54 -13.31 11.25 -200.31 -2.25 -15.56 16 14 C 0.19 3.33 13.04 180.26 2.35 5.68 16 15 N -0.55 -9.30 5.83 -186.50 -1.09 -10.38 16 16 H 0.43 5.31 8.96 -92.71 -0.83 4.48 16 17 N -0.68 -18.47 5.93 -495.54 -2.94 -21.40 16 18 C 0.06 1.90 5.97 85.56 0.51 2.41 16 19 C 0.44 19.31 7.82 87.66 0.69 20.00 16 20 O -0.62 -32.63 15.78 -3.03 -0.05 -32.67 16 21 N -0.57 -27.76 5.29 -306.99 -1.62 -29.38 16 22 C -0.33 -18.03 9.68 84.04 0.81 -17.21 16 23 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 24 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 25 N -0.92 -47.99 13.05 21.66 0.28 -47.70 16 26 Si 0.99 41.84 29.55 68.60 2.03 43.87 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 28 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 29 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.12 7.45 -2.39 -0.02 1.10 16 32 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.41 6.37 6.30 -92.70 -0.58 5.78 16 36 H 0.09 1.29 7.88 -2.39 -0.02 1.27 16 37 H 0.08 1.27 8.00 -2.39 -0.02 1.25 16 38 H 0.06 1.13 8.04 -2.39 -0.02 1.11 16 39 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.08 0.79 7.25 -2.39 -0.02 0.77 16 41 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.17 3.61 7.33 -2.91 -0.02 3.59 16 43 H 0.24 2.04 8.06 -2.91 -0.02 2.01 16 44 H 0.34 9.67 6.41 -89.70 -0.58 9.09 16 45 H 0.07 1.79 8.06 -2.39 -0.02 1.77 16 46 H 0.10 2.82 7.43 -2.39 -0.02 2.80 16 47 H 0.40 18.15 7.90 -92.71 -0.73 17.42 16 48 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 Total: -1.00 -76.26 398.23 -0.77 -77.03 By element: Atomic # 1 Polarization: 47.29 SS G_CDS: -1.70 Total: 45.59 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 8.85 Total: 22.28 kcal Atomic # 7 Polarization: -129.87 SS G_CDS: -9.85 Total: -139.72 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -0.10 Total: -49.04 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -76.26 -0.77 -77.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731632908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.461 kcal (2) G-P(sol) polarization free energy of solvation -76.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds