Wall clock time and date at job start Tue Mar 31 2020 19:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47059 * 2 1 4 4 C 1.50700 * 109.47334 * 240.00749 * 2 1 3 5 5 O 1.21287 * 119.99668 * 240.00038 * 4 2 1 6 6 N 1.34769 * 120.00457 * 59.99546 * 4 2 1 7 7 C 1.46505 * 120.00521 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.47329 * 180.02562 * 7 6 4 9 9 C 1.53002 * 109.46837 * 180.02562 * 8 7 6 10 10 H 1.08994 * 109.47127 * 304.99861 * 9 8 7 11 11 C 1.53000 * 109.46965 * 185.00004 * 9 8 7 12 12 N 1.46898 * 109.46954 * 65.00181 * 9 8 7 13 13 C 1.46906 * 110.99888 * 204.99693 * 12 9 8 14 14 C 1.50699 * 109.47140 * 180.02562 * 13 12 9 15 15 O 1.21297 * 119.99980 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00037 * 180.02562 * 14 13 12 17 17 C 1.37097 * 119.99944 * 180.02562 * 16 14 13 18 18 H 1.08003 * 120.00055 * 359.97438 * 17 16 14 19 19 C 1.38948 * 119.99682 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00492 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99897 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46948 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47378 * 120.00054 * 21 19 17 24 24 H 1.48501 * 109.47174 * 239.99969 * 21 19 17 25 25 N 1.46492 * 109.47293 * 120.00126 * 2 1 3 26 26 C 1.34948 * 126.03483 * 35.00148 * 25 2 1 27 27 C 1.35322 * 107.74489 * 179.97438 * 26 25 2 28 28 C 1.39868 * 107.92175 * 359.97438 * 27 26 25 29 29 N 1.30842 * 108.20010 * 359.74298 * 28 27 26 30 30 H 1.09001 * 109.46962 * 59.99676 * 1 2 3 31 31 H 1.09003 * 109.46947 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47288 * 299.99595 * 1 2 3 33 33 H 0.96998 * 119.99981 * 0.02562 * 6 4 2 34 34 H 1.08999 * 109.46574 * 59.99918 * 7 6 4 35 35 H 1.09002 * 109.46656 * 300.00548 * 7 6 4 36 36 H 1.08999 * 109.46904 * 60.00384 * 8 7 6 37 37 H 1.08997 * 109.47183 * 299.99978 * 8 7 6 38 38 H 1.08994 * 109.46950 * 180.02562 * 11 9 8 39 39 H 1.09006 * 109.46704 * 300.00008 * 11 9 8 40 40 H 1.08997 * 109.47119 * 59.99592 * 11 9 8 41 41 H 1.00902 * 111.00533 * 81.04100 * 12 9 8 42 42 H 1.09000 * 109.47033 * 300.00113 * 13 12 9 43 43 H 1.09001 * 109.46544 * 60.00058 * 13 12 9 44 44 H 0.96996 * 119.99844 * 359.97438 * 16 14 13 45 45 H 0.97001 * 120.00876 * 179.97438 * 20 19 17 46 46 H 1.08001 * 126.12970 * 359.95805 * 26 25 2 47 47 H 1.08008 * 126.03659 * 180.02562 * 27 26 25 48 48 H 1.07998 * 125.89856 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2305 5 8 2.7297 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1947 -0.9406 -3.6509 8 6 1.6853 -0.2188 -4.9000 9 6 2.1944 -0.9407 -6.1493 10 1 3.2806 -1.0200 -6.1058 11 6 1.7903 -0.1501 -7.3954 12 7 1.6072 -2.2858 -6.2110 13 6 2.4585 -3.1967 -6.9879 14 6 1.8249 -4.5634 -7.0296 15 8 0.7684 -4.7595 -6.4671 16 7 2.4328 -5.5681 -7.6912 17 6 1.8561 -6.8113 -7.7295 18 1 0.9149 -6.9856 -7.2293 19 6 2.4825 -7.8469 -8.4120 20 7 3.6274 -7.6346 -9.0211 21 14 1.6965 -9.5406 -8.4649 22 1 0.4195 -9.5175 -7.7073 23 1 1.4287 -9.9183 -9.8759 24 1 2.6166 -10.5327 -7.8531 25 7 2.0183 -0.6906 1.1961 26 6 1.4402 -1.7559 1.7893 27 6 2.1968 -2.0930 2.8594 28 6 3.2745 -1.2036 2.9219 29 7 3.1717 -0.3662 1.9219 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.1494 0.5390 -2.5436 34 1 1.8310 -1.9681 -3.6507 35 1 3.2848 -0.9410 -3.6509 36 1 2.0494 0.8086 -4.8999 37 1 0.5954 -0.2181 -4.9001 38 1 2.1526 -0.6646 -8.2853 39 1 0.7040 -0.0708 -7.4388 40 1 2.2260 0.8479 -7.3495 41 1 0.6718 -2.2551 -6.5882 42 1 2.5666 -2.8156 -8.0034 43 1 3.4402 -3.2650 -6.5191 44 1 3.2779 -5.4114 -8.1407 45 1 4.0650 -8.3577 -9.4972 46 1 0.5356 -2.2507 1.4679 47 1 2.0032 -2.9059 3.5438 48 1 4.0583 -1.2097 3.6649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731723401.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:27 Heat of formation + Delta-G solvation = 5.124855 kcal Electronic energy + Delta-G solvation = -28356.747222 eV Core-core repulsion = 24255.496991 eV Total energy + Delta-G solvation = -4101.250231 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.47812 -39.78067 -38.48970 -37.15180 -34.98925 -34.85554 -33.88899 -31.64143 -31.11423 -30.27244 -29.85585 -28.72328 -26.34143 -25.37021 -24.07679 -23.21707 -21.55722 -21.22342 -20.88888 -19.96448 -19.23901 -17.98997 -17.84842 -17.36080 -16.11842 -15.96639 -15.81011 -15.39451 -15.09824 -14.74510 -14.60981 -14.53831 -14.05477 -13.92605 -13.79130 -13.71967 -13.42794 -13.12165 -13.07374 -12.90284 -12.78508 -12.65701 -12.19120 -12.10378 -11.94340 -11.58725 -11.54326 -11.39266 -11.26152 -11.04945 -10.91882 -10.85437 -10.33554 -10.26057 -10.21437 -9.52257 -9.51044 -9.22877 -8.73085 -8.46764 -8.05551 -7.94868 -6.40787 -3.81519 1.66787 2.13469 2.33648 2.75279 2.98393 3.17202 3.27697 3.34982 3.91720 4.05665 4.08547 4.26810 4.31734 4.38705 4.62040 4.65598 4.77884 4.93013 4.95133 5.06311 5.08732 5.16715 5.26608 5.27244 5.34877 5.36494 5.45254 5.49729 5.64516 5.64854 5.73658 5.80224 5.88363 5.95634 6.04150 6.06511 6.16717 6.26658 6.28657 6.49051 6.76708 7.18966 7.23246 7.54722 7.56345 7.64429 7.95334 8.07470 8.62120 9.18966 9.55406 10.06664 10.77060 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011032 B = 0.002142 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.471035 B =13067.240515 C =14878.645615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.126 0.874 4 C 0.496 3.504 5 O -0.514 6.514 6 N -0.725 5.725 7 C 0.122 3.878 8 C -0.114 4.114 9 C 0.084 3.916 10 H 0.080 0.920 11 C -0.182 4.182 12 N -0.663 5.663 13 C 0.050 3.950 14 C 0.441 3.559 15 O -0.584 6.584 16 N -0.564 5.564 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.281 1.281 25 N -0.356 5.356 26 C 0.069 3.931 27 C -0.275 4.275 28 C 0.047 3.953 29 N -0.294 5.294 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.397 0.603 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.350 0.650 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.170 0.830 47 H 0.148 0.852 48 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.387 21.280 14.842 26.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.144 0.856 4 C 0.279 3.721 5 O -0.388 6.388 6 N -0.377 5.377 7 C 0.000 4.000 8 C -0.153 4.153 9 C -0.027 4.027 10 H 0.098 0.902 11 C -0.242 4.242 12 N -0.295 5.295 13 C -0.082 4.082 14 C 0.226 3.774 15 O -0.468 6.468 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.207 1.207 25 N -0.138 5.138 26 C -0.076 4.076 27 C -0.304 4.304 28 C -0.139 4.139 29 N -0.114 5.114 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.231 0.769 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.170 0.830 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.188 0.812 47 H 0.165 0.835 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.733 21.130 15.078 26.225 hybrid contribution -0.444 -0.881 -1.071 1.456 sum -4.176 20.249 14.007 24.973 Atomic orbital electron populations 1.22163 0.90508 1.04636 1.04623 1.21082 0.96125 0.97588 0.81504 0.85614 1.20689 0.81361 0.85370 0.84720 1.90820 1.36375 1.25329 1.86272 1.45991 1.53900 1.32114 1.05737 1.21441 0.98999 0.97945 0.81641 1.21746 1.01671 0.98281 0.93590 1.21503 0.99579 0.88620 0.93000 0.90205 1.22511 1.01925 1.00804 0.98916 1.60204 1.05815 1.06469 1.57014 1.21702 0.97475 0.92864 0.96189 1.19819 0.87387 0.85886 0.84281 1.90521 1.23962 1.83499 1.48803 1.41875 1.22424 1.09097 1.46694 1.19746 1.06502 0.85383 1.31124 0.87892 1.25265 0.95984 1.00170 0.96593 1.69616 1.16224 1.33873 1.34622 0.85803 0.79205 0.81464 0.77893 1.19221 1.20787 1.20718 1.48165 1.19490 1.24737 1.21456 1.22445 0.99965 0.90495 0.94700 1.21481 0.99298 1.06172 1.03428 1.23868 0.99063 0.94068 0.96932 1.77329 1.01841 1.24861 1.07411 0.89261 0.90622 0.90116 0.76878 0.89112 0.91893 0.91446 0.91056 0.92302 0.92295 0.92210 0.83031 0.93840 0.89628 0.77480 0.91930 0.81232 0.83474 0.80033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 8.73 37.16 0.32 -0.48 16 2 C 0.14 1.24 3.73 -69.09 -0.26 0.98 16 3 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.50 5.87 7.22 -10.99 -0.08 5.79 16 5 O -0.51 -9.03 16.42 5.55 0.09 -8.94 16 6 N -0.72 -6.57 5.45 -60.29 -0.33 -6.90 16 7 C 0.12 1.40 5.56 -4.04 -0.02 1.38 16 8 C -0.11 -1.00 5.01 -26.73 -0.13 -1.14 16 9 C 0.08 0.91 2.59 -67.71 -0.18 0.73 16 10 H 0.08 0.88 7.80 -51.93 -0.40 0.47 16 11 C -0.18 -1.69 9.16 37.16 0.34 -1.35 16 12 N -0.66 -9.97 5.33 -107.99 -0.58 -10.55 16 13 C 0.05 0.87 5.97 -4.97 -0.03 0.84 16 14 C 0.44 10.43 7.82 -10.99 -0.09 10.35 16 15 O -0.58 -15.87 15.78 5.54 0.09 -15.78 16 16 N -0.56 -14.46 5.29 -10.96 -0.06 -14.52 16 17 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 18 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 21 Si 0.93 21.32 29.55 -169.99 -5.02 16.29 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 N -0.36 -4.11 3.02 -56.00 -0.17 -4.28 16 26 C 0.07 0.74 10.58 -17.22 -0.18 0.55 16 27 C -0.27 -2.83 10.80 -40.01 -0.43 -3.27 16 28 C 0.05 0.52 12.03 -17.36 -0.21 0.31 16 29 N -0.29 -3.86 12.58 30.62 0.39 -3.48 16 30 H 0.09 0.24 7.56 -51.93 -0.39 -0.15 16 31 H 0.07 0.44 7.16 -51.93 -0.37 0.06 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.40 2.05 7.89 -40.82 -0.32 1.73 16 34 H 0.09 1.39 7.75 -51.93 -0.40 0.98 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 39 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.35 5.46 8.17 -39.29 -0.32 5.14 16 42 H 0.04 0.68 7.44 -51.93 -0.39 0.29 16 43 H 0.09 1.41 8.06 -51.93 -0.42 0.99 16 44 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 45 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.17 1.35 7.26 -52.49 -0.38 0.97 16 47 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 48 H 0.18 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 405.15 15.07 6.11 6.11 Total: -1.00 -37.68 405.15 -7.37 -45.05 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -7.43 Total: 14.47 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -1.18 Total: 6.63 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: -0.02 Total: -63.82 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: 0.18 Total: -24.72 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.68 -7.37 -45.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731723401.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.171 kcal (2) G-P(sol) polarization free energy of solvation -37.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds