Wall clock time and date at job start Tue Mar 31 2020 19:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47059 * 2 1 4 4 C 1.50700 * 109.47334 * 240.00749 * 2 1 3 5 5 O 1.21287 * 119.99668 * 240.00038 * 4 2 1 6 6 N 1.34769 * 120.00457 * 59.99546 * 4 2 1 7 7 C 1.46505 * 120.00521 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.47329 * 180.02562 * 7 6 4 9 9 C 1.53002 * 109.46837 * 180.02562 * 8 7 6 10 10 H 1.08994 * 109.47127 * 304.99861 * 9 8 7 11 11 C 1.53000 * 109.46965 * 185.00004 * 9 8 7 12 12 N 1.46898 * 109.46954 * 65.00181 * 9 8 7 13 13 C 1.46906 * 110.99888 * 204.99693 * 12 9 8 14 14 C 1.50699 * 109.47140 * 180.02562 * 13 12 9 15 15 O 1.21297 * 119.99980 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00037 * 180.02562 * 14 13 12 17 17 C 1.37097 * 119.99944 * 180.02562 * 16 14 13 18 18 H 1.08003 * 120.00055 * 359.97438 * 17 16 14 19 19 C 1.38948 * 119.99682 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00492 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99897 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46948 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47378 * 120.00054 * 21 19 17 24 24 H 1.48501 * 109.47174 * 239.99969 * 21 19 17 25 25 N 1.46492 * 109.47293 * 120.00126 * 2 1 3 26 26 C 1.34948 * 126.03483 * 35.00148 * 25 2 1 27 27 C 1.35322 * 107.74489 * 179.97438 * 26 25 2 28 28 C 1.39868 * 107.92175 * 359.97438 * 27 26 25 29 29 N 1.30842 * 108.20010 * 359.74298 * 28 27 26 30 30 H 1.09001 * 109.46962 * 59.99676 * 1 2 3 31 31 H 1.09003 * 109.46947 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47288 * 299.99595 * 1 2 3 33 33 H 0.96998 * 119.99981 * 0.02562 * 6 4 2 34 34 H 1.08999 * 109.46574 * 59.99918 * 7 6 4 35 35 H 1.09002 * 109.46656 * 300.00548 * 7 6 4 36 36 H 1.08999 * 109.46904 * 60.00384 * 8 7 6 37 37 H 1.08997 * 109.47183 * 299.99978 * 8 7 6 38 38 H 1.08994 * 109.46950 * 180.02562 * 11 9 8 39 39 H 1.09006 * 109.46704 * 300.00008 * 11 9 8 40 40 H 1.08997 * 109.47119 * 59.99592 * 11 9 8 41 41 H 1.00902 * 111.00533 * 81.04100 * 12 9 8 42 42 H 1.09000 * 109.47033 * 300.00113 * 13 12 9 43 43 H 1.09001 * 109.46544 * 60.00058 * 13 12 9 44 44 H 0.96996 * 119.99844 * 359.97438 * 16 14 13 45 45 H 0.97001 * 120.00876 * 179.97438 * 20 19 17 46 46 H 1.08001 * 126.12970 * 359.95805 * 26 25 2 47 47 H 1.08008 * 126.03659 * 180.02562 * 27 26 25 48 48 H 1.07998 * 125.89856 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2305 5 8 2.7297 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1947 -0.9406 -3.6509 8 6 1.6853 -0.2188 -4.9000 9 6 2.1944 -0.9407 -6.1493 10 1 3.2806 -1.0200 -6.1058 11 6 1.7903 -0.1501 -7.3954 12 7 1.6072 -2.2858 -6.2110 13 6 2.4585 -3.1967 -6.9879 14 6 1.8249 -4.5634 -7.0296 15 8 0.7684 -4.7595 -6.4671 16 7 2.4328 -5.5681 -7.6912 17 6 1.8561 -6.8113 -7.7295 18 1 0.9149 -6.9856 -7.2293 19 6 2.4825 -7.8469 -8.4120 20 7 3.6274 -7.6346 -9.0211 21 14 1.6965 -9.5406 -8.4649 22 1 0.4195 -9.5175 -7.7073 23 1 1.4287 -9.9183 -9.8759 24 1 2.6166 -10.5327 -7.8531 25 7 2.0183 -0.6906 1.1961 26 6 1.4402 -1.7559 1.7893 27 6 2.1968 -2.0930 2.8594 28 6 3.2745 -1.2036 2.9219 29 7 3.1717 -0.3662 1.9219 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.1494 0.5390 -2.5436 34 1 1.8310 -1.9681 -3.6507 35 1 3.2848 -0.9410 -3.6509 36 1 2.0494 0.8086 -4.8999 37 1 0.5954 -0.2181 -4.9001 38 1 2.1526 -0.6646 -8.2853 39 1 0.7040 -0.0708 -7.4388 40 1 2.2260 0.8479 -7.3495 41 1 0.6718 -2.2551 -6.5882 42 1 2.5666 -2.8156 -8.0034 43 1 3.4402 -3.2650 -6.5191 44 1 3.2779 -5.4114 -8.1407 45 1 4.0650 -8.3577 -9.4972 46 1 0.5356 -2.2507 1.4679 47 1 2.0032 -2.9059 3.5438 48 1 4.0583 -1.2097 3.6649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731723401.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:26 Heat of formation + Delta-G solvation = -25.238593 kcal Electronic energy + Delta-G solvation = -28358.063880 eV Core-core repulsion = 24255.496991 eV Total energy + Delta-G solvation = -4102.566889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.27091 -40.71738 -40.21835 -38.34788 -36.14025 -35.83928 -35.56751 -33.33810 -32.60565 -31.08800 -30.62307 -29.50047 -27.97120 -26.12490 -25.68699 -24.14141 -22.44845 -22.01410 -21.77820 -21.15564 -20.73357 -19.93610 -18.77194 -18.16715 -17.71877 -16.98141 -16.81075 -16.69055 -16.36350 -16.19811 -15.74368 -15.65193 -15.36080 -15.21871 -14.86834 -14.50639 -14.40620 -14.31756 -14.07704 -13.75087 -13.57334 -13.51948 -13.44706 -13.29970 -13.11048 -12.86342 -12.70110 -12.63282 -12.43403 -12.27430 -12.18595 -12.10986 -11.74400 -11.68118 -11.53153 -11.21836 -10.38583 -10.35067 -10.17608 -10.03517 -9.53536 -9.25659 -8.48809 -5.97651 0.85555 1.34750 1.39767 1.40249 1.46764 1.54216 1.95985 2.03378 2.17874 2.27469 2.93752 3.18454 3.41937 3.54233 3.61942 3.79141 3.86469 3.96203 4.11454 4.13179 4.21719 4.32278 4.43875 4.47709 4.52763 4.57468 4.59879 4.61776 4.70652 4.74296 4.86268 4.90305 5.01658 5.07941 5.14231 5.18702 5.21256 5.31553 5.38910 5.40321 5.73188 5.90417 6.03057 6.12851 6.45464 6.47812 6.57947 6.73827 7.10579 7.13828 7.54231 8.09433 8.68920 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011032 B = 0.002142 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.471035 B =13067.240515 C =14878.645615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.144 3.856 3 H 0.147 0.853 4 C 0.492 3.508 5 O -0.581 6.581 6 N -0.704 5.704 7 C 0.128 3.872 8 C -0.101 4.101 9 C 0.082 3.918 10 H 0.079 0.921 11 C -0.175 4.175 12 N -0.677 5.677 13 C 0.066 3.934 14 C 0.437 3.563 15 O -0.623 6.623 16 N -0.575 5.575 17 C -0.333 4.333 18 H 0.078 0.922 19 C -0.015 4.015 20 N -0.921 5.921 21 Si 0.993 3.007 22 H -0.273 1.273 23 H -0.268 1.268 24 H -0.272 1.272 25 N -0.365 5.365 26 C 0.058 3.942 27 C -0.286 4.286 28 C 0.039 3.961 29 N -0.335 5.335 30 H 0.118 0.882 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.420 0.580 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.346 0.654 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.190 0.810 47 H 0.167 0.833 48 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.155 23.196 14.654 27.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.038 3.962 3 H 0.164 0.836 4 C 0.277 3.723 5 O -0.460 6.460 6 N -0.357 5.357 7 C 0.005 3.995 8 C -0.139 4.139 9 C -0.028 4.028 10 H 0.097 0.903 11 C -0.234 4.234 12 N -0.310 5.310 13 C -0.066 4.066 14 C 0.224 3.776 15 O -0.509 6.509 16 N -0.212 5.212 17 C -0.462 4.462 18 H 0.096 0.904 19 C -0.214 4.214 20 N -0.562 5.562 21 Si 0.817 3.183 22 H -0.198 1.198 23 H -0.193 1.193 24 H -0.197 1.197 25 N -0.148 5.148 26 C -0.088 4.088 27 C -0.315 4.315 28 C -0.147 4.147 29 N -0.156 5.156 30 H 0.136 0.864 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.259 0.741 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.165 0.835 42 H 0.086 0.914 43 H 0.114 0.886 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.207 0.793 47 H 0.185 0.815 48 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.509 23.126 14.864 27.858 hybrid contribution -0.199 -1.433 -0.991 1.753 sum -4.708 21.693 13.873 26.177 Atomic orbital electron populations 1.22221 0.87481 1.04750 1.06763 1.21376 0.98251 0.97538 0.79026 0.83573 1.21384 0.80200 0.84551 0.86189 1.90789 1.39518 1.28415 1.87275 1.45792 1.53205 1.32233 1.04447 1.21213 0.97989 0.96549 0.83797 1.21692 1.02231 0.99223 0.90790 1.21648 0.99456 0.86765 0.94960 0.90279 1.22425 1.02333 1.01524 0.97125 1.60209 1.05486 1.08632 1.56652 1.21522 0.97389 0.89547 0.98152 1.20950 0.86692 0.87672 0.82239 1.90485 1.25816 1.84653 1.49963 1.41962 1.22722 1.09056 1.47504 1.19692 1.06532 0.87301 1.32709 0.90399 1.26062 0.96369 1.03358 0.95637 1.69675 1.16819 1.35162 1.34553 0.84867 0.78098 0.76958 0.78389 1.19788 1.19327 1.19725 1.48441 1.19173 1.25207 1.21969 1.22929 1.00708 0.90407 0.94763 1.21856 0.99123 1.06640 1.03884 1.24400 0.99751 0.93632 0.96904 1.77238 1.03216 1.26455 1.08647 0.86396 0.91499 0.88649 0.74135 0.93464 0.93567 0.87877 0.90023 0.93360 0.91856 0.89770 0.83510 0.91449 0.88644 0.77039 0.91290 0.79278 0.81534 0.77618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.73 71.98 0.63 -0.56 16 2 C 0.14 2.31 3.73 44.25 0.17 2.48 16 3 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 4 C 0.49 11.57 7.22 87.66 0.63 12.21 16 5 O -0.58 -21.34 16.42 -3.05 -0.05 -21.39 16 6 N -0.70 -11.82 5.45 -463.05 -2.52 -14.34 16 7 C 0.13 2.88 5.56 86.38 0.48 3.36 16 8 C -0.10 -1.51 5.01 30.59 0.15 -1.36 16 9 C 0.08 1.61 2.59 44.92 0.12 1.72 16 10 H 0.08 1.59 7.80 -2.39 -0.02 1.57 16 11 C -0.18 -2.71 9.16 71.98 0.66 -2.05 16 12 N -0.68 -20.08 5.33 -495.57 -2.64 -22.72 16 13 C 0.07 2.28 5.97 85.56 0.51 2.79 16 14 C 0.44 21.20 7.82 87.66 0.69 21.88 16 15 O -0.62 -35.03 15.78 -3.08 -0.05 -35.08 16 16 N -0.58 -30.27 5.29 -306.98 -1.62 -31.89 16 17 C -0.33 -19.34 9.68 84.04 0.81 -18.53 16 18 H 0.08 4.84 7.16 -2.91 -0.02 4.81 16 19 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 20 N -0.92 -50.68 13.05 21.66 0.28 -50.40 16 21 Si 0.99 43.83 29.55 68.60 2.03 45.86 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 25 N -0.37 -8.35 3.02 -331.07 -1.00 -9.35 16 26 C 0.06 1.20 10.58 83.54 0.88 2.09 16 27 C -0.29 -5.82 10.80 21.99 0.24 -5.58 16 28 C 0.04 0.85 12.03 85.23 1.02 1.88 16 29 N -0.33 -8.84 12.58 -57.02 -0.72 -9.56 16 30 H 0.12 0.21 7.56 -2.39 -0.02 0.19 16 31 H 0.07 0.67 7.16 -2.39 -0.02 0.65 16 32 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.42 3.05 7.89 -92.71 -0.73 2.32 16 34 H 0.05 1.50 7.75 -2.39 -0.02 1.48 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.05 0.86 7.45 -2.39 -0.02 0.85 16 39 H 0.06 0.94 8.13 -2.38 -0.02 0.92 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.35 10.66 8.17 -89.69 -0.73 9.93 16 42 H 0.07 2.01 7.44 -2.39 -0.02 1.99 16 43 H 0.10 3.11 8.06 -2.39 -0.02 3.09 16 44 H 0.40 19.81 7.90 -92.71 -0.73 19.07 16 45 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 46 H 0.19 2.93 7.26 -2.91 -0.02 2.90 16 47 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 48 H 0.21 3.03 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -86.71 405.15 -0.03 -86.74 By element: Atomic # 1 Polarization: 43.36 SS G_CDS: -1.20 Total: 42.16 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 7.46 Total: 19.98 kcal Atomic # 7 Polarization: -130.05 SS G_CDS: -8.22 Total: -138.27 kcal Atomic # 8 Polarization: -56.37 SS G_CDS: -0.10 Total: -56.47 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -86.71 -0.03 -86.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731723401.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.503 kcal (2) G-P(sol) polarization free energy of solvation -86.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds