Wall clock time and date at job start Tue Mar 31 2020 19:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47503 * 2 1 4 4 C 1.52997 * 109.47160 * 120.00310 * 2 1 3 5 5 C 1.53000 * 109.47060 * 184.99748 * 4 2 1 6 6 N 1.46512 * 109.46797 * 180.02562 * 5 4 2 7 7 C 1.34770 * 119.99646 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00244 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00019 * 179.97438 * 7 6 5 10 10 H 1.09001 * 109.47122 * 60.00417 * 9 7 6 11 11 C 1.53006 * 109.47184 * 300.00531 * 9 7 6 12 12 N 1.46500 * 109.47583 * 180.02562 * 9 7 6 13 13 C 1.34949 * 126.03339 * 84.99775 * 12 9 7 14 14 C 1.35319 * 107.74151 * 179.97438 * 13 12 9 15 15 C 1.39863 * 107.92335 * 0.02562 * 14 13 12 16 16 N 1.30842 * 108.20032 * 359.73867 * 15 14 13 17 17 N 1.46905 * 109.47235 * 240.00147 * 2 1 3 18 18 C 1.46904 * 110.99890 * 85.00232 * 17 2 1 19 19 C 1.50695 * 109.47181 * 180.02562 * 18 17 2 20 20 O 1.21295 * 119.99860 * 359.97438 * 19 18 17 21 21 N 1.34783 * 120.00175 * 179.97438 * 19 18 17 22 22 C 1.37095 * 120.00008 * 179.97438 * 21 19 18 23 23 H 1.07996 * 120.00078 * 359.97438 * 22 21 19 24 24 C 1.38942 * 119.99745 * 180.02562 * 22 21 19 25 25 N 1.31418 * 120.00281 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99869 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47012 * 60.00034 * 26 24 22 28 28 H 1.48506 * 109.46946 * 180.02562 * 26 24 22 29 29 H 1.48493 * 109.46907 * 299.99892 * 26 24 22 30 30 H 1.09004 * 109.46800 * 59.99966 * 1 2 3 31 31 H 1.08998 * 109.47230 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47396 * 299.99800 * 1 2 3 33 33 H 1.09001 * 109.46832 * 64.99876 * 4 2 1 34 34 H 1.09002 * 109.47153 * 305.00067 * 4 2 1 35 35 H 1.09001 * 109.47194 * 60.00350 * 5 4 2 36 36 H 1.08992 * 109.47132 * 299.99697 * 5 4 2 37 37 H 0.96992 * 119.99836 * 0.02562 * 6 5 4 38 38 H 1.09001 * 109.47002 * 299.99404 * 11 9 7 39 39 H 1.08993 * 109.46955 * 59.99842 * 11 9 7 40 40 H 1.09000 * 109.47050 * 179.97438 * 11 9 7 41 41 H 1.07996 * 126.13035 * 0.02562 * 13 12 9 42 42 H 1.08008 * 126.03344 * 180.02562 * 14 13 12 43 43 H 1.07998 * 125.89851 * 179.97438 * 15 14 13 44 44 H 1.00895 * 111.00540 * 208.95205 * 17 2 1 45 45 H 1.09005 * 109.47041 * 300.00207 * 18 17 2 46 46 H 1.08994 * 109.47422 * 59.99802 * 18 17 2 47 47 H 0.96998 * 119.99195 * 359.97438 * 21 19 18 48 48 H 0.96993 * 119.99994 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3136 6 7 4.0532 -1.3046 2.5095 7 6 5.3740 -1.3401 2.7751 8 8 6.1582 -0.7995 2.0244 9 6 5.8763 -2.0506 4.0054 10 1 5.5883 -3.1010 3.9615 11 6 5.2658 -1.4061 5.2516 12 7 7.3363 -1.9464 4.0678 13 6 8.0372 -0.9181 4.5897 14 6 9.3527 -1.2051 4.4549 15 6 9.4594 -2.4512 3.8287 16 7 8.2512 -2.8989 3.6009 17 7 2.0197 -0.6925 -1.1995 18 6 2.0825 0.2227 -2.3469 19 6 2.5874 -0.5216 -3.5560 20 8 2.8678 -1.6986 -3.4703 21 7 2.7274 0.1205 -4.7328 22 6 3.1872 -0.5566 -5.8327 23 1 3.4376 -1.6043 -5.7561 24 6 3.3320 0.1055 -7.0456 25 7 3.0277 1.3806 -7.1386 26 14 3.9592 -0.8168 -8.5441 27 1 3.0382 -1.9392 -8.8558 28 1 4.0231 0.1085 -9.7039 29 1 5.3154 -1.3526 -8.2637 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.7516 -1.7716 1.2054 34 1 1.6053 -0.2618 2.1369 35 1 3.8532 0.4369 1.3573 36 1 3.9994 -1.0729 0.4259 37 1 3.4259 -1.7367 3.1100 38 1 5.5539 -0.3558 5.2956 39 1 4.1796 -1.4834 5.2055 40 1 5.6289 -1.9203 6.1415 41 1 7.6225 -0.0263 5.0359 42 1 10.1750 -0.5820 4.7745 43 1 10.3799 -2.9582 3.5799 44 1 2.9173 -1.1205 -1.0289 45 1 1.0871 0.6165 -2.5525 46 1 2.7588 1.0463 -2.1182 47 1 2.5028 1.0616 -4.8014 48 1 3.1285 1.8427 -7.9855 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731723402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:28 Heat of formation + Delta-G solvation = -23.764767 kcal Electronic energy + Delta-G solvation = -28347.283390 eV Core-core repulsion = 24244.780411 eV Total energy + Delta-G solvation = -4102.502979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.29660 -40.80970 -40.24354 -38.45033 -36.14471 -35.85769 -35.56754 -33.36162 -32.62899 -31.11531 -30.67127 -29.59312 -28.10246 -26.19326 -25.69689 -24.18470 -22.51980 -22.02764 -21.52566 -21.18201 -20.73471 -19.95650 -18.79532 -18.24958 -17.83187 -17.17634 -17.00253 -16.62185 -16.52807 -16.24454 -15.77485 -15.66922 -15.46873 -15.19828 -14.88436 -14.65820 -14.46211 -14.28887 -14.09369 -13.77393 -13.53435 -13.46646 -13.37740 -13.32876 -13.15405 -12.89371 -12.66532 -12.59467 -12.47380 -12.28760 -12.21290 -12.13315 -11.77557 -11.67378 -11.53961 -11.24762 -10.39855 -10.38988 -10.27908 -10.05548 -9.54632 -9.35486 -8.49895 -5.99079 0.84644 1.35547 1.36969 1.38577 1.42724 1.49923 1.94829 2.00996 2.10209 2.26530 2.90574 3.16820 3.37274 3.47746 3.59067 3.76815 3.77983 3.94626 3.95913 4.07948 4.12181 4.26753 4.40949 4.45761 4.51591 4.55788 4.58421 4.61614 4.65750 4.70693 4.85916 4.95513 4.98717 5.02884 5.07866 5.12841 5.17936 5.26113 5.37065 5.47555 5.70647 5.88351 6.03449 6.10547 6.37090 6.38677 6.56369 6.73188 7.05522 7.08700 7.51808 8.07417 8.67359 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011261 B = 0.002126 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.897554 B =13164.875560 C =15122.483033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.081 3.919 3 H 0.052 0.948 4 C -0.116 4.116 5 C 0.117 3.883 6 N -0.701 5.701 7 C 0.494 3.506 8 O -0.579 6.579 9 C 0.142 3.858 10 H 0.139 0.861 11 C -0.152 4.152 12 N -0.366 5.366 13 C 0.062 3.938 14 C -0.286 4.286 15 C 0.036 3.964 16 N -0.341 5.341 17 N -0.681 5.681 18 C 0.065 3.935 19 C 0.435 3.565 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.337 4.337 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.993 3.007 27 H -0.270 1.270 28 H -0.267 1.267 29 H -0.274 1.274 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.423 0.577 38 H 0.074 0.926 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.199 0.801 42 H 0.169 0.831 43 H 0.203 0.797 44 H 0.339 0.661 45 H 0.106 0.894 46 H 0.061 0.939 47 H 0.397 0.603 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.112 0.456 31.510 31.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.070 0.930 4 C -0.154 4.154 5 C -0.008 4.008 6 N -0.355 5.355 7 C 0.279 3.721 8 O -0.457 6.457 9 C 0.036 3.964 10 H 0.157 0.843 11 C -0.210 4.210 12 N -0.149 5.149 13 C -0.084 4.084 14 C -0.315 4.315 15 C -0.150 4.150 16 N -0.162 5.162 17 N -0.315 5.315 18 C -0.068 4.068 19 C 0.222 3.778 20 O -0.512 6.512 21 N -0.210 5.210 22 C -0.466 4.466 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.817 3.183 27 H -0.195 1.195 28 H -0.192 1.192 29 H -0.199 1.199 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.134 0.866 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.261 0.739 38 H 0.093 0.907 39 H 0.138 0.862 40 H 0.111 0.889 41 H 0.215 0.785 42 H 0.187 0.813 43 H 0.220 0.780 44 H 0.159 0.841 45 H 0.124 0.876 46 H 0.079 0.921 47 H 0.231 0.769 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.847 -1.008 30.215 30.244 hybrid contribution 1.495 1.063 -0.802 2.002 sum 0.648 0.056 29.413 29.421 Atomic orbital electron populations 1.21778 0.93005 1.02381 1.02175 1.21662 0.97070 0.96100 0.88011 0.92987 1.21900 0.91611 1.03136 0.98755 1.21369 0.95714 0.96800 0.86889 1.45695 1.06576 1.56355 1.26870 1.21382 0.82990 0.80247 0.87465 1.90790 1.56739 1.47270 1.50940 1.21392 0.75927 1.03899 0.95215 0.84299 1.22227 1.03517 1.01792 0.93417 1.48441 1.05492 1.14914 1.46028 1.22981 0.92767 0.94109 0.98533 1.21868 0.96972 0.99973 1.12678 1.24397 0.96277 0.96394 0.97888 1.77290 1.00122 1.15993 1.22805 1.60266 1.34485 1.32674 1.04120 1.21576 1.02164 0.93680 0.89331 1.20952 0.83271 0.88034 0.85526 1.90487 1.56719 1.18315 1.85636 1.41934 1.58226 1.12583 1.08248 1.19622 1.42373 0.95957 0.88652 0.90498 1.26060 0.97143 0.96668 1.01393 1.69664 1.48437 1.09652 1.28259 0.84988 0.78643 0.77911 0.76785 1.19547 1.19180 1.19921 0.93660 0.92544 0.89606 0.89795 0.86552 0.91956 0.94649 0.73855 0.90669 0.86243 0.88881 0.78465 0.81318 0.78013 0.84061 0.87599 0.92136 0.76949 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.41 71.98 0.68 -1.75 16 2 C 0.08 1.67 2.65 44.91 0.12 1.79 16 3 H 0.05 1.03 7.80 -2.39 -0.02 1.01 16 4 C -0.12 -1.65 4.92 30.59 0.15 -1.50 16 5 C 0.12 2.30 5.50 86.38 0.48 2.78 16 6 N -0.70 -10.33 5.45 -463.05 -2.52 -12.85 16 7 C 0.49 10.66 7.22 87.66 0.63 11.29 16 8 O -0.58 -19.88 16.42 -3.03 -0.05 -19.93 16 9 C 0.14 2.09 3.73 44.25 0.17 2.26 16 10 H 0.14 1.70 8.14 -2.39 -0.02 1.69 16 11 C -0.15 -0.67 8.73 71.98 0.63 -0.04 16 12 N -0.37 -7.95 3.02 -331.05 -1.00 -8.95 16 13 C 0.06 1.12 10.57 83.54 0.88 2.01 16 14 C -0.29 -5.35 10.80 21.99 0.24 -5.11 16 15 C 0.04 0.80 12.03 85.23 1.02 1.82 16 16 N -0.34 -9.23 12.58 -57.03 -0.72 -9.94 16 17 N -0.68 -21.59 5.93 -495.58 -2.94 -24.53 16 18 C 0.06 2.32 5.96 85.55 0.51 2.83 16 19 C 0.43 21.74 7.82 87.65 0.69 22.42 16 20 O -0.62 -36.38 15.78 -3.08 -0.05 -36.43 16 21 N -0.57 -30.70 5.29 -306.99 -1.62 -32.32 16 22 C -0.34 -19.87 9.68 84.04 0.81 -19.06 16 23 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 24 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 25 N -0.92 -50.90 13.05 21.66 0.28 -50.62 16 26 Si 0.99 44.35 29.55 68.60 2.03 46.38 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 28 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 29 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 30 H 0.04 0.93 7.45 -2.39 -0.02 0.91 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.04 1.00 6.42 -2.39 -0.02 0.98 16 37 H 0.42 2.38 7.89 -92.71 -0.73 1.65 16 38 H 0.07 0.35 7.15 -2.39 -0.02 0.33 16 39 H 0.12 -0.20 7.56 -2.39 -0.02 -0.22 16 40 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.20 2.14 7.26 -2.91 -0.02 2.12 16 42 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 43 H 0.20 3.16 8.06 -2.91 -0.02 3.13 16 44 H 0.34 11.90 6.17 -89.70 -0.55 11.34 16 45 H 0.11 3.39 7.44 -2.38 -0.02 3.37 16 46 H 0.06 1.97 8.05 -2.39 -0.02 1.95 16 47 H 0.40 20.09 7.90 -92.71 -0.73 19.35 16 48 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -88.77 402.60 -0.14 -88.90 By element: Atomic # 1 Polarization: 41.81 SS G_CDS: -1.02 Total: 40.79 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: 7.47 Total: 19.49 kcal Atomic # 7 Polarization: -130.69 SS G_CDS: -8.52 Total: -139.21 kcal Atomic # 8 Polarization: -56.26 SS G_CDS: -0.10 Total: -56.36 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -88.77 -0.14 -88.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731723402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.139 kcal (2) G-P(sol) polarization free energy of solvation -88.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds