Wall clock time and date at job start Tue Mar 31 2020 19:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 11 11 C 1.53006 * 109.47180 * 60.00237 * 9 7 6 12 12 N 1.46504 * 109.47396 * 180.02562 * 9 7 6 13 13 C 1.34939 * 126.03730 * 275.00728 * 12 9 7 14 14 C 1.35326 * 107.74828 * 179.97438 * 13 12 9 15 15 C 1.39872 * 107.91608 * 359.97438 * 14 13 12 16 16 N 1.30844 * 108.20105 * 359.73756 * 15 14 13 17 17 N 1.46898 * 109.47061 * 119.99908 * 2 1 3 18 18 C 1.46905 * 110.99865 * 275.00665 * 17 2 1 19 19 C 1.50701 * 109.46951 * 179.97438 * 18 17 2 20 20 O 1.21294 * 120.00148 * 0.02562 * 19 18 17 21 21 N 1.34782 * 120.00062 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99889 * 179.97438 * 21 19 18 23 23 H 1.07994 * 120.00089 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99695 * 180.02562 * 22 21 19 25 25 N 1.31409 * 119.99866 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00048 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.46780 * 59.99707 * 26 24 22 28 28 H 1.48496 * 109.47123 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.46749 * 300.00266 * 26 24 22 30 30 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 32 32 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 33 33 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 34 34 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 37 37 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 38 38 H 1.08998 * 109.46505 * 60.00277 * 11 9 7 39 39 H 1.08996 * 109.46884 * 179.97438 * 11 9 7 40 40 H 1.08996 * 109.47129 * 300.00474 * 11 9 7 41 41 H 1.08000 * 126.13089 * 359.95215 * 13 12 9 42 42 H 1.08000 * 126.04025 * 179.97438 * 14 13 12 43 43 H 1.07997 * 125.89523 * 180.02562 * 15 14 13 44 44 H 1.00893 * 111.00068 * 151.05171 * 17 2 1 45 45 H 1.09003 * 109.46905 * 299.99465 * 18 17 2 46 46 H 1.08999 * 109.47700 * 60.00069 * 18 17 2 47 47 H 0.96999 * 119.99748 * 0.02562 * 21 19 18 48 48 H 0.97003 * 119.99449 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0534 -1.3042 -2.5094 7 6 5.3742 -1.3396 -2.7749 8 8 6.1585 -0.7997 -2.0237 9 6 5.8767 -2.0510 -4.0048 10 1 5.5889 -3.1013 -3.9601 11 6 5.2662 -1.4075 -5.2515 12 7 7.3368 -1.9474 -4.0665 13 6 8.0384 -0.9198 -4.5886 14 6 9.3538 -1.2069 -4.4521 15 6 9.4595 -2.4525 -3.8246 16 7 8.2511 -2.8946 -3.5876 17 7 2.0196 -0.6925 1.1994 18 6 2.0823 0.2227 2.3469 19 6 2.5871 -0.5218 3.5561 20 8 2.8676 -1.6987 3.4703 21 7 2.7279 0.1205 4.7326 22 6 3.1867 -0.5568 5.8327 23 1 3.4357 -1.6049 5.7565 24 6 3.3313 0.1052 7.0458 25 7 3.0279 1.3804 7.1386 26 14 3.9571 -0.8175 8.5447 27 1 5.3132 -1.3542 8.2649 28 1 4.0210 0.1077 9.7044 29 1 3.0352 -1.9393 8.8558 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6055 -0.2617 -2.1369 34 1 1.7517 -1.7714 -1.2056 35 1 3.9995 -1.0726 -0.4258 36 1 3.8532 0.4372 -1.3572 37 1 3.4261 -1.7357 -3.1104 38 1 5.5541 -0.3572 -5.2961 39 1 5.6300 -1.9217 -6.1409 40 1 4.1799 -1.4848 -5.2053 41 1 7.6244 -0.0281 -5.0356 42 1 10.1765 -0.5843 -4.7713 43 1 10.3797 -2.9593 -3.5744 44 1 2.9172 -1.1204 1.0288 45 1 2.7587 1.0463 2.1183 46 1 1.0869 0.6163 2.5526 47 1 2.5039 1.0618 4.8011 48 1 3.1292 1.8427 7.9854 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731723403.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:31 Heat of formation + Delta-G solvation = -23.826238 kcal Electronic energy + Delta-G solvation = -28348.256181 eV Core-core repulsion = 24245.750536 eV Total energy + Delta-G solvation = -4102.505645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.29586 -40.80914 -40.24353 -38.45108 -36.14508 -35.85802 -35.56681 -33.36245 -32.62937 -31.11541 -30.67123 -29.59368 -28.10231 -26.19229 -25.69597 -24.18493 -22.52065 -22.02621 -21.52540 -21.18218 -20.73472 -19.95656 -18.79528 -18.25121 -17.83234 -17.17680 -17.00240 -16.62239 -16.52835 -16.24425 -15.77608 -15.66749 -15.46885 -15.19848 -14.88099 -14.65793 -14.46336 -14.28833 -14.09390 -13.77615 -13.53492 -13.46591 -13.37804 -13.32853 -13.15441 -12.89376 -12.66456 -12.59395 -12.47377 -12.28778 -12.21329 -12.13328 -11.77622 -11.67165 -11.53956 -11.24970 -10.39912 -10.39024 -10.27906 -10.05617 -9.54572 -9.35501 -8.49963 -5.99065 0.84532 1.35553 1.36943 1.38556 1.43028 1.49925 1.94935 2.00996 2.09978 2.26528 2.90554 3.16797 3.37308 3.47710 3.59052 3.76797 3.78066 3.94596 3.95862 4.07898 4.12193 4.26710 4.40905 4.45719 4.51555 4.55873 4.58417 4.61658 4.65722 4.70790 4.85908 4.95442 4.98728 5.02833 5.07932 5.12842 5.17936 5.26111 5.37043 5.47515 5.70641 5.88323 6.03470 6.10538 6.37064 6.38672 6.56341 6.73213 7.05523 7.08679 7.51801 8.07418 8.67286 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011259 B = 0.002127 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.350234 B =13160.403140 C =15118.895034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.081 3.919 3 H 0.052 0.948 4 C -0.116 4.116 5 C 0.117 3.883 6 N -0.701 5.701 7 C 0.494 3.506 8 O -0.579 6.579 9 C 0.142 3.858 10 H 0.139 0.861 11 C -0.151 4.151 12 N -0.366 5.366 13 C 0.061 3.939 14 C -0.286 4.286 15 C 0.036 3.964 16 N -0.341 5.341 17 N -0.681 5.681 18 C 0.065 3.935 19 C 0.434 3.566 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.337 4.337 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.993 3.007 27 H -0.274 1.274 28 H -0.267 1.267 29 H -0.270 1.270 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.035 0.965 36 H 0.062 0.938 37 H 0.423 0.577 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.119 0.881 41 H 0.199 0.801 42 H 0.169 0.831 43 H 0.203 0.797 44 H 0.339 0.661 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.397 0.603 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.109 0.450 -31.527 31.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.070 0.930 4 C -0.154 4.154 5 C -0.008 4.008 6 N -0.355 5.355 7 C 0.279 3.721 8 O -0.457 6.457 9 C 0.036 3.964 10 H 0.157 0.843 11 C -0.209 4.209 12 N -0.149 5.149 13 C -0.084 4.084 14 C -0.315 4.315 15 C -0.150 4.150 16 N -0.162 5.162 17 N -0.315 5.315 18 C -0.067 4.067 19 C 0.222 3.778 20 O -0.512 6.512 21 N -0.210 5.210 22 C -0.466 4.466 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.817 3.183 27 H -0.199 1.199 28 H -0.192 1.192 29 H -0.195 1.195 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.134 0.866 34 H 0.102 0.898 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.261 0.739 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.138 0.862 41 H 0.215 0.785 42 H 0.187 0.813 43 H 0.220 0.780 44 H 0.159 0.841 45 H 0.079 0.921 46 H 0.124 0.876 47 H 0.231 0.769 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.845 -1.010 -30.223 30.252 hybrid contribution 1.494 1.064 0.800 2.001 sum 0.649 0.054 -29.423 29.430 Atomic orbital electron populations 1.21777 0.93004 1.02382 1.02174 1.21661 0.97071 0.96099 0.88013 0.92991 1.21898 0.91610 1.03138 0.98756 1.21368 0.95714 0.96798 0.86894 1.45695 1.06580 1.56381 1.26842 1.21391 0.82989 0.80244 0.87476 1.90790 1.56740 1.47309 1.50906 1.21399 0.75926 1.03884 0.95229 0.84305 1.22224 1.03508 1.01802 0.93400 1.48451 1.05483 1.15229 1.45698 1.22981 0.92757 0.94035 0.98624 1.21871 0.96978 0.99862 1.12774 1.24400 0.96266 0.96437 0.97850 1.77293 1.00152 1.16333 1.22439 1.60263 1.34482 1.32682 1.04117 1.21578 1.02164 0.93678 0.89328 1.20953 0.83274 0.88032 0.85529 1.90486 1.56718 1.18324 1.85630 1.41934 1.58245 1.12556 1.08254 1.19624 1.42437 0.95927 0.88632 0.90500 1.26062 0.97137 0.96674 1.01393 1.69665 1.48418 1.09645 1.28269 0.84988 0.78644 0.77911 0.76782 1.19921 1.19175 1.19547 0.92545 0.93652 0.89613 0.86552 0.89795 0.94653 0.91963 0.73852 0.90676 0.88869 0.86231 0.78463 0.81318 0.78016 0.84062 0.92138 0.87597 0.76949 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.41 71.98 0.68 -1.75 16 2 C 0.08 1.67 2.65 44.91 0.12 1.79 16 3 H 0.05 1.03 7.80 -2.39 -0.02 1.01 16 4 C -0.12 -1.65 4.92 30.59 0.15 -1.50 16 5 C 0.12 2.30 5.50 86.38 0.48 2.78 16 6 N -0.70 -10.34 5.45 -463.06 -2.52 -12.86 16 7 C 0.49 10.66 7.22 87.66 0.63 11.29 16 8 O -0.58 -19.89 16.42 -3.03 -0.05 -19.94 16 9 C 0.14 2.09 3.73 44.25 0.17 2.26 16 10 H 0.14 1.70 8.14 -2.39 -0.02 1.69 16 11 C -0.15 -0.67 8.73 71.98 0.63 -0.04 16 12 N -0.37 -7.94 3.02 -331.04 -1.00 -8.94 16 13 C 0.06 1.12 10.58 83.54 0.88 2.00 16 14 C -0.29 -5.35 10.80 21.99 0.24 -5.11 16 15 C 0.04 0.80 12.03 85.24 1.03 1.82 16 16 N -0.34 -9.25 12.58 -57.02 -0.72 -9.96 16 17 N -0.68 -21.60 5.93 -495.58 -2.94 -24.54 16 18 C 0.06 2.33 5.97 85.56 0.51 2.84 16 19 C 0.43 21.74 7.82 87.66 0.69 22.43 16 20 O -0.62 -36.40 15.78 -3.07 -0.05 -36.44 16 21 N -0.57 -30.70 5.29 -306.98 -1.62 -32.32 16 22 C -0.34 -19.89 9.68 84.04 0.81 -19.07 16 23 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 24 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 25 N -0.92 -50.89 13.05 21.66 0.28 -50.61 16 26 Si 0.99 44.36 29.55 68.60 2.03 46.38 16 27 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 28 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 29 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.04 0.93 7.45 -2.39 -0.02 0.91 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.04 1.00 6.43 -2.39 -0.02 0.98 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.42 2.38 7.89 -92.71 -0.73 1.65 16 38 H 0.07 0.35 7.16 -2.39 -0.02 0.33 16 39 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.12 -0.21 7.56 -2.39 -0.02 -0.22 16 41 H 0.20 2.14 7.26 -2.91 -0.02 2.11 16 42 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 43 H 0.20 3.16 8.06 -2.91 -0.02 3.13 16 44 H 0.34 11.90 6.17 -89.70 -0.55 11.35 16 45 H 0.06 1.97 8.06 -2.39 -0.02 1.95 16 46 H 0.11 3.39 7.44 -2.39 -0.02 3.37 16 47 H 0.40 20.09 7.90 -92.71 -0.73 19.36 16 48 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -88.82 402.61 -0.13 -88.95 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -1.02 Total: 40.80 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 7.47 Total: 19.49 kcal Atomic # 7 Polarization: -130.72 SS G_CDS: -8.52 Total: -139.24 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -0.10 Total: -56.39 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -88.82 -0.13 -88.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731723403.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.126 kcal (2) G-P(sol) polarization free energy of solvation -88.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds