Wall clock time and date at job start Tue Mar 31 2020 19:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47714 * 2 1 4 4 C 1.53004 * 109.46946 * 239.99889 * 2 1 3 5 5 C 1.52997 * 109.47177 * 174.99892 * 4 2 1 6 6 N 1.46497 * 109.47360 * 180.02562 * 5 4 2 7 7 C 1.34780 * 120.00413 * 180.02562 * 6 5 4 8 8 O 1.21594 * 119.99871 * 359.97438 * 7 6 5 9 9 C 1.47525 * 120.00185 * 179.97438 * 7 6 5 10 10 C 1.36587 * 125.76837 * 180.02562 * 9 7 6 11 11 N 1.34814 * 106.83982 * 179.97438 * 10 9 7 12 12 C 1.46499 * 126.59789 * 179.97438 * 11 10 9 13 13 C 1.53172 * 109.54232 * 34.82162 * 12 11 10 14 14 C 1.53107 * 109.15888 * 183.24290 * 13 12 11 15 15 O 1.42908 * 109.48547 * 57.47409 * 14 13 12 16 16 C 1.42905 * 114.09754 * 298.88796 * 15 14 13 17 17 C 1.53092 * 109.41397 * 61.15854 * 16 15 14 18 18 N 1.40210 * 106.81108 * 0.02562 * 11 10 9 19 19 N 1.28764 * 108.36678 * 359.97438 * 18 11 10 20 20 N 1.46500 * 109.47277 * 120.00635 * 2 1 3 21 21 C 1.36939 * 119.99755 * 274.99771 * 20 2 1 22 22 H 1.08005 * 119.99953 * 359.97438 * 21 20 2 23 23 C 1.38807 * 120.00073 * 180.02562 * 21 20 2 24 24 N 1.31619 * 120.00567 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99982 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46990 * 90.00209 * 25 23 21 27 27 H 1.48505 * 109.47330 * 209.99866 * 25 23 21 28 28 H 1.48495 * 109.47433 * 329.99986 * 25 23 21 29 29 H 1.09005 * 109.47531 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47067 * 299.99735 * 1 2 3 31 31 H 1.09003 * 109.47380 * 59.99710 * 1 2 3 32 32 H 1.09003 * 109.47095 * 55.00191 * 4 2 1 33 33 H 1.08994 * 109.47302 * 295.00287 * 4 2 1 34 34 H 1.09001 * 109.47218 * 60.00556 * 5 4 2 35 35 H 1.08999 * 109.47685 * 300.00660 * 5 4 2 36 36 H 0.97007 * 119.99679 * 359.97438 * 6 5 4 37 37 H 1.08003 * 126.58310 * 359.97438 * 10 9 7 38 38 H 1.09001 * 109.54621 * 155.00419 * 12 11 10 39 39 H 1.08998 * 109.52885 * 303.05610 * 13 12 11 40 40 H 1.08998 * 109.52309 * 63.25287 * 13 12 11 41 41 H 1.09000 * 109.40701 * 297.49884 * 14 13 12 42 42 H 1.08997 * 109.48984 * 177.50183 * 14 13 12 43 43 H 1.08998 * 109.48104 * 301.17933 * 16 15 14 44 44 H 1.08997 * 109.48077 * 181.14242 * 16 15 14 45 45 H 1.08997 * 109.52618 * 182.48298 * 17 16 15 46 46 H 1.09005 * 109.57230 * 62.32326 * 17 16 15 47 47 H 0.96996 * 120.00443 * 94.99513 * 20 2 1 48 48 H 0.96998 * 120.00910 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 7 4.0530 -1.3034 -2.5102 7 6 5.3739 -1.3396 -2.7755 8 8 6.1604 -0.7990 -2.0220 9 6 5.8656 -2.0350 -3.9801 10 6 7.1727 -2.1445 -4.3612 11 7 7.1870 -2.8514 -5.5090 12 6 8.3684 -3.2208 -6.2926 13 6 9.5431 -3.4969 -5.3493 14 6 10.7929 -3.8027 -6.1792 15 8 11.0647 -2.7055 -7.0536 16 6 10.0201 -2.4329 -7.9899 17 6 8.7400 -2.0700 -7.2328 18 7 5.8536 -3.1642 -5.8092 19 7 5.1031 -2.6681 -4.8880 20 7 2.0183 -0.6907 1.1961 21 6 2.1491 -0.0077 2.3757 22 1 1.8927 1.0404 2.4242 23 6 2.6124 -0.6619 3.5089 24 7 2.9254 -1.9390 3.4498 25 14 2.7915 0.2701 5.1179 26 1 1.5242 0.1788 5.8865 27 1 3.8965 -0.3231 5.9132 28 1 3.0963 1.6952 4.8332 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6053 -0.2618 -2.1370 33 1 1.7515 -1.7715 -1.2056 34 1 3.9994 -1.0729 -0.4261 35 1 3.8532 0.4369 -1.3574 36 1 3.4256 -1.7350 -3.1112 37 1 8.0302 -1.7420 -3.8425 38 1 8.1528 -4.1147 -6.8780 39 1 9.7256 -2.6200 -4.7282 40 1 9.3077 -4.3513 -4.7147 41 1 10.6246 -4.7040 -6.7686 42 1 11.6425 -3.9565 -5.5140 43 1 9.8418 -3.3164 -8.6029 44 1 10.3130 -1.6000 -8.6290 45 1 7.9306 -1.9048 -7.9439 46 1 8.9045 -1.1630 -6.6510 47 1 2.2490 -1.6319 1.1525 48 1 3.2488 -2.3963 4.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731738410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:58 Heat of formation + Delta-G solvation = 15.958227 kcal Electronic energy + Delta-G solvation = -28442.051617 eV Core-core repulsion = 24341.271156 eV Total energy + Delta-G solvation = -4100.780461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.52845 -40.03869 -39.14936 -36.52242 -35.92682 -34.32101 -32.27741 -32.07104 -31.88386 -31.12555 -29.18532 -28.04054 -26.11380 -24.61507 -24.19088 -23.51109 -22.75327 -22.16543 -20.72355 -20.56823 -19.73355 -18.43830 -17.21536 -16.96620 -16.83825 -16.29511 -15.95979 -15.76181 -15.49501 -15.20926 -15.09370 -14.74114 -14.39691 -14.35346 -13.86461 -13.79380 -13.42622 -13.21106 -12.88442 -12.58569 -12.43145 -12.29993 -12.19941 -11.98289 -11.87378 -11.67919 -11.48915 -11.14153 -11.02344 -10.86933 -10.70342 -10.61064 -10.58697 -10.41906 -10.26270 -10.05352 -9.79645 -9.58646 -9.50173 -8.87176 -8.73773 -6.89737 -5.69975 -2.98480 0.88731 1.60577 1.61401 3.14529 3.25916 3.36814 3.48422 3.53652 3.55318 3.61168 3.81161 3.98989 4.08687 4.14248 4.39974 4.45617 4.54344 4.65293 4.68165 4.77689 4.81750 4.91034 4.98242 5.03056 5.20228 5.24341 5.34326 5.39617 5.47318 5.60287 5.62094 5.76614 5.93918 6.05221 6.14651 6.23771 6.40741 6.44277 6.45772 6.52937 6.72515 6.76990 6.92413 7.12270 7.56148 7.76760 7.82203 8.33959 8.48374 9.59663 10.16937 10.51609 11.52660 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018319 B = 0.001931 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.117728 B =14497.466114 C =15516.906314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.133 4.133 5 C 0.122 3.878 6 N -0.711 5.711 7 C 0.598 3.402 8 O -0.535 6.535 9 C -0.094 4.094 10 C 0.093 3.907 11 N -0.358 5.358 12 C 0.152 3.848 13 C -0.173 4.173 14 C 0.067 3.933 15 O -0.378 6.378 16 C 0.066 3.934 17 C -0.169 4.169 18 N -0.068 5.068 19 N -0.204 5.204 20 N -0.724 5.724 21 C -0.236 4.236 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.404 0.596 37 H 0.202 0.798 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.108 0.892 43 H 0.059 0.941 44 H 0.106 0.894 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.056 -3.989 -26.826 30.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.172 4.172 5 C 0.000 4.000 6 N -0.361 5.361 7 C 0.381 3.619 8 O -0.411 6.411 9 C -0.233 4.233 10 C -0.063 4.063 11 N -0.143 5.143 12 C 0.050 3.950 13 C -0.212 4.212 14 C -0.010 4.010 15 O -0.296 6.296 16 C -0.012 4.012 17 C -0.208 4.208 18 N -0.047 5.047 19 N -0.077 5.077 20 N -0.366 5.366 21 C -0.367 4.367 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.219 1.219 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.239 0.761 37 H 0.219 0.781 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.077 0.923 42 H 0.126 0.874 43 H 0.077 0.923 44 H 0.124 0.876 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.867 -4.064 -27.110 30.721 hybrid contribution 0.205 0.168 1.311 1.337 sum 14.072 -3.895 -25.799 29.644 Atomic orbital electron populations 1.22421 0.99128 1.00858 0.99934 1.20155 0.91878 0.95574 0.86002 0.93247 1.22067 0.93775 1.01970 0.99368 1.21521 0.94582 0.97170 0.86741 1.45913 1.06683 1.56077 1.27425 1.16742 0.82984 0.79478 0.82731 1.90845 1.55571 1.46302 1.48420 1.21605 0.90579 1.10237 1.00881 1.23294 1.00155 0.94599 0.88287 1.50622 1.08712 1.37368 1.17635 1.21631 0.81078 0.99830 0.92483 1.22736 0.94423 1.04907 0.99087 1.22576 0.96857 0.89273 0.92334 1.88017 1.41674 1.51524 1.48380 1.22589 0.85981 1.01708 0.90882 1.22716 0.99914 0.98442 0.99713 1.81976 0.82887 1.21180 1.18665 1.74627 1.26638 1.06560 0.99911 1.42461 1.78070 1.10676 1.05343 1.19225 1.36298 0.93838 0.87347 0.91208 1.24726 1.02277 0.95979 0.98034 1.69655 1.51028 1.08665 1.28773 0.86217 0.77180 0.78863 0.84102 1.21888 1.21862 1.20785 0.93505 0.92762 0.94549 0.91797 0.91473 0.89462 0.91562 0.76131 0.78086 0.86701 0.89252 0.89007 0.92294 0.87411 0.92299 0.87633 0.89277 0.89689 0.78269 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.49 37.15 0.35 -2.56 16 2 C 0.17 3.40 2.89 -67.93 -0.20 3.20 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.57 16 4 C -0.13 -2.12 4.87 -26.73 -0.13 -2.25 16 5 C 0.12 2.10 5.56 -4.05 -0.02 2.08 16 6 N -0.71 -10.75 5.55 -61.35 -0.34 -11.09 16 7 C 0.60 9.61 7.82 -12.47 -0.10 9.51 16 8 O -0.54 -10.29 16.86 5.28 0.09 -10.20 16 9 C -0.09 -1.26 6.99 -83.55 -0.58 -1.84 16 10 C 0.09 0.97 10.40 -16.84 -0.18 0.79 16 11 N -0.36 -3.26 3.55 -54.39 -0.19 -3.45 16 12 C 0.15 0.83 3.32 -67.75 -0.22 0.60 16 13 C -0.17 -0.74 5.15 -26.59 -0.14 -0.88 16 14 C 0.07 0.24 6.84 37.21 0.25 0.50 16 15 O -0.38 -2.13 10.77 -35.23 -0.38 -2.51 16 16 C 0.07 0.24 6.84 37.20 0.25 0.50 16 17 C -0.17 -0.78 5.75 -26.59 -0.15 -0.93 16 18 N -0.07 -0.82 13.78 60.35 0.83 0.02 16 19 N -0.20 -2.75 12.04 32.85 0.40 -2.35 16 20 N -0.72 -17.91 4.57 -53.43 -0.24 -18.15 16 21 C -0.24 -6.56 9.93 -15.06 -0.15 -6.70 16 22 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 25 Si 0.90 22.80 29.55 -169.99 -5.02 17.77 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.83 7.75 -51.93 -0.40 1.43 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.40 5.30 8.16 -40.82 -0.33 4.96 16 37 H 0.20 1.62 7.27 -52.48 -0.38 1.24 16 38 H 0.12 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.41 7.08 -51.93 -0.37 0.04 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 44 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 48 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 398.66 15.07 6.01 6.01 Total: -1.00 -34.80 398.66 -6.92 -41.72 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -7.69 Total: 8.53 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.10 Total: 1.50 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: 1.17 Total: -62.82 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.29 Total: -12.71 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.80 -6.92 -41.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731738410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.677 kcal (2) G-P(sol) polarization free energy of solvation -34.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds