Wall clock time and date at job start Tue Mar 31 2020 19:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47714 * 2 1 4 4 C 1.53004 * 109.46946 * 239.99889 * 2 1 3 5 5 C 1.52997 * 109.47177 * 174.99892 * 4 2 1 6 6 N 1.46497 * 109.47360 * 180.02562 * 5 4 2 7 7 C 1.34780 * 120.00413 * 180.02562 * 6 5 4 8 8 O 1.21594 * 119.99871 * 359.97438 * 7 6 5 9 9 C 1.47525 * 120.00185 * 179.97438 * 7 6 5 10 10 C 1.36587 * 125.76837 * 180.02562 * 9 7 6 11 11 N 1.34814 * 106.83982 * 179.97438 * 10 9 7 12 12 C 1.46499 * 126.59789 * 179.97438 * 11 10 9 13 13 C 1.53172 * 109.54232 * 34.82162 * 12 11 10 14 14 C 1.53107 * 109.15888 * 183.24290 * 13 12 11 15 15 O 1.42908 * 109.48547 * 57.47409 * 14 13 12 16 16 C 1.42905 * 114.09754 * 298.88796 * 15 14 13 17 17 C 1.53092 * 109.41397 * 61.15854 * 16 15 14 18 18 N 1.40210 * 106.81108 * 0.02562 * 11 10 9 19 19 N 1.28764 * 108.36678 * 359.97438 * 18 11 10 20 20 N 1.46500 * 109.47277 * 120.00635 * 2 1 3 21 21 C 1.36939 * 119.99755 * 274.99771 * 20 2 1 22 22 H 1.08005 * 119.99953 * 359.97438 * 21 20 2 23 23 C 1.38807 * 120.00073 * 180.02562 * 21 20 2 24 24 N 1.31619 * 120.00567 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99982 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46990 * 90.00209 * 25 23 21 27 27 H 1.48505 * 109.47330 * 209.99866 * 25 23 21 28 28 H 1.48495 * 109.47433 * 329.99986 * 25 23 21 29 29 H 1.09005 * 109.47531 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47067 * 299.99735 * 1 2 3 31 31 H 1.09003 * 109.47380 * 59.99710 * 1 2 3 32 32 H 1.09003 * 109.47095 * 55.00191 * 4 2 1 33 33 H 1.08994 * 109.47302 * 295.00287 * 4 2 1 34 34 H 1.09001 * 109.47218 * 60.00556 * 5 4 2 35 35 H 1.08999 * 109.47685 * 300.00660 * 5 4 2 36 36 H 0.97007 * 119.99679 * 359.97438 * 6 5 4 37 37 H 1.08003 * 126.58310 * 359.97438 * 10 9 7 38 38 H 1.09001 * 109.54621 * 155.00419 * 12 11 10 39 39 H 1.08998 * 109.52885 * 303.05610 * 13 12 11 40 40 H 1.08998 * 109.52309 * 63.25287 * 13 12 11 41 41 H 1.09000 * 109.40701 * 297.49884 * 14 13 12 42 42 H 1.08997 * 109.48984 * 177.50183 * 14 13 12 43 43 H 1.08998 * 109.48104 * 301.17933 * 16 15 14 44 44 H 1.08997 * 109.48077 * 181.14242 * 16 15 14 45 45 H 1.08997 * 109.52618 * 182.48298 * 17 16 15 46 46 H 1.09005 * 109.57230 * 62.32326 * 17 16 15 47 47 H 0.96996 * 120.00443 * 94.99513 * 20 2 1 48 48 H 0.96998 * 120.00910 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 7 4.0530 -1.3034 -2.5102 7 6 5.3739 -1.3396 -2.7755 8 8 6.1604 -0.7990 -2.0220 9 6 5.8656 -2.0350 -3.9801 10 6 7.1727 -2.1445 -4.3612 11 7 7.1870 -2.8514 -5.5090 12 6 8.3684 -3.2208 -6.2926 13 6 9.5431 -3.4969 -5.3493 14 6 10.7929 -3.8027 -6.1792 15 8 11.0647 -2.7055 -7.0536 16 6 10.0201 -2.4329 -7.9899 17 6 8.7400 -2.0700 -7.2328 18 7 5.8536 -3.1642 -5.8092 19 7 5.1031 -2.6681 -4.8880 20 7 2.0183 -0.6907 1.1961 21 6 2.1491 -0.0077 2.3757 22 1 1.8927 1.0404 2.4242 23 6 2.6124 -0.6619 3.5089 24 7 2.9254 -1.9390 3.4498 25 14 2.7915 0.2701 5.1179 26 1 1.5242 0.1788 5.8865 27 1 3.8965 -0.3231 5.9132 28 1 3.0963 1.6952 4.8332 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6053 -0.2618 -2.1370 33 1 1.7515 -1.7715 -1.2056 34 1 3.9994 -1.0729 -0.4261 35 1 3.8532 0.4369 -1.3574 36 1 3.4256 -1.7350 -3.1112 37 1 8.0302 -1.7420 -3.8425 38 1 8.1528 -4.1147 -6.8780 39 1 9.7256 -2.6200 -4.7282 40 1 9.3077 -4.3513 -4.7147 41 1 10.6246 -4.7040 -6.7686 42 1 11.6425 -3.9565 -5.5140 43 1 9.8418 -3.3164 -8.6029 44 1 10.3130 -1.6000 -8.6290 45 1 7.9306 -1.9048 -7.9439 46 1 8.9045 -1.1630 -6.6510 47 1 2.2490 -1.6319 1.1525 48 1 3.2488 -2.3963 4.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731738410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:57 Heat of formation + Delta-G solvation = -10.378984 kcal Electronic energy + Delta-G solvation = -28443.193684 eV Core-core repulsion = 24341.271156 eV Total energy + Delta-G solvation = -4101.922528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.41017 -40.64153 -40.23336 -38.12227 -36.52972 -35.84614 -34.13288 -32.71958 -32.33101 -32.10700 -30.91053 -29.53764 -26.71921 -25.91183 -25.22520 -24.66534 -23.50590 -23.38645 -21.84254 -21.23019 -21.15598 -19.48629 -19.10956 -17.69142 -17.36900 -17.17119 -16.94355 -16.84125 -16.54303 -16.20792 -15.91146 -15.77355 -15.59589 -15.32931 -15.07055 -14.92846 -14.89285 -14.40358 -14.10742 -13.55769 -13.50759 -13.44180 -13.22707 -12.80527 -12.79306 -12.65964 -12.61051 -12.46960 -12.29660 -12.26786 -12.20770 -12.11125 -11.67471 -11.58225 -11.51137 -11.28926 -11.23238 -10.91615 -10.75092 -10.50227 -10.06841 -8.95470 -7.89882 -5.16787 0.03220 0.53769 0.89780 1.47593 1.49232 1.57263 2.07418 2.17888 2.59152 2.87517 3.06486 3.11638 3.42212 3.43987 3.60427 3.73413 3.78866 3.84079 3.93254 4.00879 4.05989 4.14577 4.19953 4.24495 4.38366 4.44454 4.51886 4.57979 4.65836 4.69286 4.76288 4.78269 4.87843 4.90683 4.94775 5.03380 5.03796 5.11888 5.22592 5.34269 5.39824 5.41588 5.56686 5.63374 6.17119 6.32796 6.39398 6.82345 7.10778 7.38677 8.16541 8.38232 9.33690 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018319 B = 0.001931 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.117728 B =14497.466114 C =15516.906314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 H 0.046 0.954 4 C -0.118 4.118 5 C 0.134 3.866 6 N -0.702 5.702 7 C 0.597 3.403 8 O -0.574 6.574 9 C -0.117 4.117 10 C 0.108 3.892 11 N -0.342 5.342 12 C 0.143 3.857 13 C -0.169 4.169 14 C 0.067 3.933 15 O -0.399 6.399 16 C 0.067 3.933 17 C -0.163 4.163 18 N -0.079 5.079 19 N -0.218 5.218 20 N -0.735 5.735 21 C -0.231 4.231 22 H 0.075 0.925 23 C -0.080 4.080 24 N -0.970 5.970 25 Si 0.968 3.032 26 H -0.288 1.288 27 H -0.299 1.299 28 H -0.271 1.271 29 H 0.043 0.957 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.416 0.584 37 H 0.223 0.777 38 H 0.130 0.870 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.116 0.884 43 H 0.075 0.925 44 H 0.114 0.886 45 H 0.089 0.911 46 H 0.075 0.925 47 H 0.371 0.629 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.331 -3.711 -28.945 32.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.057 3.943 3 H 0.064 0.936 4 C -0.156 4.156 5 C 0.010 3.990 6 N -0.352 5.352 7 C 0.382 3.618 8 O -0.453 6.453 9 C -0.256 4.256 10 C -0.050 4.050 11 N -0.126 5.126 12 C 0.043 3.957 13 C -0.208 4.208 14 C -0.010 4.010 15 O -0.317 6.317 16 C -0.011 4.011 17 C -0.202 4.202 18 N -0.059 5.059 19 N -0.092 5.092 20 N -0.375 5.375 21 C -0.363 4.363 22 H 0.093 0.907 23 C -0.272 4.272 24 N -0.622 5.622 25 Si 0.797 3.203 26 H -0.215 1.215 27 H -0.226 1.226 28 H -0.195 1.195 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.253 0.747 37 H 0.240 0.760 38 H 0.148 0.852 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.134 0.866 43 H 0.093 0.907 44 H 0.132 0.868 45 H 0.108 0.892 46 H 0.093 0.907 47 H 0.203 0.797 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.105 -3.770 -29.308 32.743 hybrid contribution 0.176 0.090 1.812 1.822 sum 14.281 -3.680 -27.496 31.201 Atomic orbital electron populations 1.22264 0.97170 1.00995 1.00894 1.20446 0.93124 0.95288 0.85482 0.93565 1.21929 0.92551 1.02060 0.99071 1.21208 0.95395 0.96418 0.85949 1.45762 1.06900 1.55759 1.26802 1.17078 0.82771 0.78892 0.83081 1.90816 1.56432 1.48100 1.49975 1.21317 0.91806 1.11832 1.00669 1.23576 0.99725 0.93495 0.88221 1.50883 1.08756 1.35862 1.17126 1.22066 0.80050 1.00798 0.92747 1.22741 0.94177 1.04907 0.98955 1.22691 0.96627 0.89330 0.92393 1.87995 1.42497 1.52297 1.48945 1.22691 0.84916 1.02837 0.90608 1.22681 1.00535 0.97576 0.99408 1.81893 0.84102 1.21376 1.18484 1.74594 1.27376 1.07026 1.00194 1.42659 1.78347 1.10243 1.06290 1.19611 1.34172 0.94119 0.88382 0.90690 1.25506 1.03435 0.96910 1.01382 1.69813 1.53026 1.10191 1.29150 0.85215 0.76737 0.78085 0.80224 1.21520 1.22605 1.19547 0.93770 0.94691 0.90662 0.87879 0.91235 0.93843 0.92174 0.74731 0.76010 0.85214 0.89644 0.88652 0.90726 0.86598 0.90664 0.86799 0.89232 0.90655 0.79676 0.94329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 9.49 71.98 0.68 -4.48 16 2 C 0.17 6.28 2.89 44.99 0.13 6.41 16 3 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 4 C -0.12 -3.58 4.87 30.59 0.15 -3.43 16 5 C 0.13 4.65 5.56 86.38 0.48 5.13 16 6 N -0.70 -21.17 5.55 -466.28 -2.59 -23.76 16 7 C 0.60 19.42 7.82 86.69 0.68 20.10 16 8 O -0.57 -22.67 16.86 -4.01 -0.07 -22.74 16 9 C -0.12 -3.09 6.99 40.81 0.29 -2.81 16 10 C 0.11 2.13 10.40 83.85 0.87 3.00 16 11 N -0.34 -5.72 3.55 -325.98 -1.16 -6.88 16 12 C 0.14 1.28 3.32 45.11 0.15 1.43 16 13 C -0.17 -1.12 5.15 30.69 0.16 -0.97 16 14 C 0.07 0.34 6.84 72.02 0.49 0.83 16 15 O -0.40 -3.71 10.77 -148.98 -1.60 -5.32 16 16 C 0.07 0.35 6.84 72.01 0.49 0.84 16 17 C -0.16 -1.21 5.75 30.69 0.18 -1.04 16 18 N -0.08 -1.81 13.78 37.02 0.51 -1.30 16 19 N -0.22 -5.74 12.04 -50.00 -0.60 -6.34 16 20 N -0.73 -36.84 4.57 -322.95 -1.48 -38.32 16 21 C -0.23 -12.94 9.93 84.03 0.83 -12.10 16 22 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 23 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 24 N -0.97 -60.94 13.06 21.65 0.28 -60.65 16 25 Si 0.97 47.55 29.55 68.60 2.03 49.58 16 26 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 27 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 28 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 29 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.04 1.90 7.75 -2.39 -0.02 1.89 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.42 10.54 8.16 -92.70 -0.76 9.79 16 37 H 0.22 3.33 7.27 -2.91 -0.02 3.30 16 38 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 0.65 7.08 -2.39 -0.02 0.64 16 40 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 47 H 0.37 20.22 7.80 -92.71 -0.72 19.50 16 48 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -76.84 398.66 0.87 -75.96 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: -0.50 Total: 31.14 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 6.05 Total: 8.64 kcal Atomic # 7 Polarization: -132.23 SS G_CDS: -5.03 Total: -137.26 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -1.67 Total: -28.06 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -76.84 0.87 -75.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731738410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.586 kcal (2) G-P(sol) polarization free energy of solvation -76.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds