Wall clock time and date at job start Tue Mar 31 2020 20:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.46812 * 2 1 4 4 C 1.34268 * 125.74950 * 125.30921 * 3 2 1 5 5 C 1.38045 * 107.41324 * 180.10688 * 4 3 2 6 6 C 1.47429 * 126.41316 * 179.86836 * 5 4 3 7 7 O 1.21603 * 120.00033 * 142.52629 * 6 5 4 8 8 N 1.34781 * 120.00208 * 322.80926 * 6 5 4 9 9 C 1.46499 * 119.99761 * 4.51913 * 8 6 5 10 10 C 1.46500 * 120.00205 * 184.51310 * 8 6 5 11 11 C 1.53001 * 109.46510 * 89.99724 * 10 8 6 12 12 N 1.46908 * 109.46839 * 179.97438 * 11 10 8 13 13 C 1.46904 * 110.99686 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46490 * 179.97438 * 13 12 11 15 15 O 1.21293 * 120.00705 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99642 * 180.02562 * 14 13 12 17 17 C 1.37102 * 119.99741 * 180.02562 * 16 14 13 18 18 H 1.07996 * 119.99899 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99615 * 180.02562 * 17 16 14 20 20 N 1.31406 * 120.00213 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99863 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46961 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47090 * 120.00105 * 21 19 17 24 24 H 1.48495 * 109.47078 * 240.00370 * 21 19 17 25 25 C 1.41289 * 107.17367 * 359.61343 * 5 4 3 26 26 C 1.50696 * 125.99076 * 180.27758 * 25 5 4 27 27 N 1.30448 * 108.02263 * 0.23586 * 25 5 4 28 28 H 1.08997 * 109.47412 * 299.99731 * 1 2 3 29 29 H 1.09008 * 109.46852 * 59.99835 * 1 2 3 30 30 H 1.09002 * 109.47409 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47001 * 240.00671 * 2 1 3 32 32 H 1.09000 * 109.47152 * 120.00132 * 2 1 3 33 33 H 1.07990 * 126.29281 * 359.95687 * 4 3 2 34 34 H 1.08996 * 109.47454 * 84.77325 * 9 8 6 35 35 H 1.09004 * 109.46864 * 204.77440 * 9 8 6 36 36 H 1.08999 * 109.47066 * 324.77205 * 9 8 6 37 37 H 1.08996 * 109.47416 * 209.99769 * 10 8 6 38 38 H 1.09007 * 109.47160 * 330.00531 * 10 8 6 39 39 H 1.08999 * 109.47814 * 300.00168 * 11 10 8 40 40 H 1.08999 * 109.46952 * 60.00332 * 11 10 8 41 41 H 1.00900 * 110.99405 * 56.05425 * 12 11 10 42 42 H 1.08990 * 109.47212 * 299.99979 * 13 12 11 43 43 H 1.08998 * 109.46972 * 60.00790 * 13 12 11 44 44 H 0.96998 * 120.00412 * 0.02562 * 16 14 13 45 45 H 0.96998 * 120.00449 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.47584 * 89.99191 * 26 25 5 47 47 H 1.09000 * 109.47309 * 209.99486 * 26 25 5 48 48 H 1.09007 * 109.47215 * 329.99736 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8735 1.9109 0.8892 5 6 3.0717 3.2307 0.5363 6 6 3.9339 4.2029 1.2327 7 8 4.5718 5.0172 0.5934 8 7 4.0194 4.1855 2.5777 9 6 3.3348 3.1396 3.3417 10 6 4.7971 5.2123 3.2756 11 6 3.8924 6.4017 3.6039 12 7 4.6720 7.4312 4.3043 13 6 3.8337 8.5909 4.6368 14 6 4.6659 9.6231 5.3532 15 8 5.8416 9.4136 5.5654 16 7 4.1036 10.7792 5.7581 17 6 4.8607 11.7185 6.4093 18 1 5.9077 11.5322 6.5975 19 6 4.2809 12.9101 6.8272 20 7 3.0071 13.1369 6.5978 21 14 5.3123 14.1897 7.7152 22 1 6.7067 13.6962 7.8480 23 1 5.3074 15.4553 6.9384 24 1 4.7429 14.4348 9.0645 25 6 2.2982 3.4737 -0.6209 26 6 2.2075 4.7797 -1.3672 27 7 1.6771 2.3692 -0.9305 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 3.3219 1.3993 1.7279 34 1 3.9668 2.2529 3.3909 35 1 3.1343 3.4993 4.3510 36 1 2.3941 2.8886 2.8518 37 1 5.2010 4.7973 4.1989 38 1 5.6161 5.5442 2.6374 39 1 3.4883 6.8169 2.6806 40 1 3.0733 6.0699 4.2420 41 1 5.4749 7.7092 3.7602 42 1 3.4294 9.0215 3.7209 43 1 3.0144 8.2739 5.2820 44 1 3.1633 10.9467 5.5887 45 1 2.6022 13.9686 6.8898 46 1 2.9789 4.8130 -2.1365 47 1 1.2258 4.8645 -1.8332 48 1 2.3522 5.6065 -0.6717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731959636.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:32 Heat of formation + Delta-G solvation = 11.143827 kcal Electronic energy + Delta-G solvation = -28280.303790 eV Core-core repulsion = 24179.314561 eV Total energy + Delta-G solvation = -4100.989229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.85234 -39.58600 -38.23021 -36.33024 -35.21696 -34.95986 -33.78630 -31.92365 -31.23472 -30.92436 -29.27504 -28.09023 -27.12729 -25.97070 -24.29372 -23.63841 -22.54884 -21.76118 -20.54906 -19.34586 -19.07858 -17.85206 -17.48800 -16.87990 -16.29977 -16.19227 -15.95809 -15.47783 -15.25853 -14.77073 -14.59039 -14.51305 -14.23814 -13.84016 -13.65037 -13.59203 -13.36315 -13.23395 -13.09455 -12.88211 -12.81814 -12.55872 -12.52391 -12.26868 -12.15355 -12.00115 -11.90344 -11.48629 -11.46064 -11.13542 -11.04923 -10.92486 -10.31447 -10.19316 -10.01955 -9.68452 -9.48579 -8.98721 -8.84258 -8.41000 -8.03372 -7.92316 -6.38385 -3.79051 1.21217 1.90915 1.92620 2.74015 3.09114 3.19153 3.29433 3.37075 3.85799 3.95102 4.15582 4.17507 4.31927 4.39875 4.47024 4.56750 4.63999 4.84129 4.84589 4.98525 5.03395 5.08382 5.16580 5.18532 5.24252 5.26059 5.32251 5.35496 5.47715 5.51592 5.56492 5.65066 5.69243 5.81423 5.91300 5.96206 6.03906 6.21227 6.27635 6.36573 6.44102 7.17149 7.22882 7.29769 7.58793 7.69226 8.08593 8.10282 8.65035 9.21472 9.58177 10.09689 10.79527 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025194 B = 0.001693 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.125014 B =16534.510692 C =16722.103995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.126 3.874 3 N -0.360 5.360 4 C 0.093 3.907 5 C -0.283 4.283 6 C 0.593 3.407 7 O -0.532 6.532 8 N -0.612 5.612 9 C 0.074 3.926 10 C 0.118 3.882 11 C 0.046 3.954 12 N -0.667 5.667 13 C 0.052 3.948 14 C 0.442 3.558 15 O -0.582 6.582 16 N -0.565 5.565 17 C -0.298 4.298 18 H 0.104 0.896 19 C 0.021 3.979 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.128 3.872 26 C -0.073 4.073 27 N -0.298 5.298 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.184 0.816 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.031 0.969 40 H 0.070 0.930 41 H 0.351 0.649 42 H 0.044 0.956 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.642 -28.946 -12.380 32.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.006 3.994 3 N -0.139 5.139 4 C -0.057 4.057 5 C -0.298 4.298 6 C 0.381 3.619 7 O -0.409 6.409 8 N -0.346 5.346 9 C -0.069 4.069 10 C -0.004 4.004 11 C -0.085 4.085 12 N -0.300 5.300 13 C -0.080 4.080 14 C 0.227 3.773 15 O -0.467 6.467 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.122 0.878 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.039 4.039 26 C -0.132 4.132 27 N -0.120 5.120 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.201 0.799 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.049 0.951 40 H 0.088 0.912 41 H 0.171 0.829 42 H 0.062 0.938 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.102 0.898 47 H 0.092 0.908 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.555 -29.505 -12.719 33.006 hybrid contribution 0.142 1.340 0.270 1.374 sum -7.413 -28.165 -12.449 31.674 Atomic orbital electron populations 1.22056 0.93297 1.03125 1.03882 1.21821 0.96534 0.76882 1.04171 1.48536 1.34114 1.10513 1.20719 1.23274 0.93284 0.93979 0.95209 1.20188 1.11578 0.94832 1.03222 1.17355 0.80363 0.82959 0.81234 1.90793 1.44352 1.40024 1.65687 1.47648 1.51997 1.29258 1.05685 1.22000 0.96929 0.90658 0.97325 1.21420 0.93944 0.87669 0.97393 1.22266 0.96644 0.92796 0.96763 1.60025 1.09710 1.11218 1.49028 1.21652 0.96093 0.91033 0.99258 1.19806 0.88604 0.83646 0.85210 1.90521 1.16641 1.78885 1.60608 1.41870 1.12438 1.14769 1.51068 1.19768 0.95604 0.95419 1.32001 0.87836 1.25264 0.96102 0.98484 0.98165 1.69619 1.10942 1.26452 1.47369 0.85795 0.79885 0.79934 0.78696 1.19204 1.20795 1.20779 1.22423 0.93176 0.95176 0.93153 1.20243 1.02939 0.90170 0.99852 1.77143 1.24857 0.96670 1.13307 0.91882 0.90892 0.90446 0.89371 0.88294 0.79896 0.92704 0.90330 0.91043 0.89325 0.89489 0.95127 0.91203 0.82941 0.93792 0.89665 0.77463 0.91958 0.89789 0.90806 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.60 10.09 37.16 0.37 -0.23 16 2 C 0.13 0.46 7.21 -4.04 -0.03 0.43 16 3 N -0.36 -2.75 3.65 -60.81 -0.22 -2.97 16 4 C 0.09 0.68 9.16 -16.56 -0.15 0.53 16 5 C -0.28 -3.02 5.39 -105.07 -0.57 -3.59 16 6 C 0.59 7.42 7.38 -12.52 -0.09 7.32 16 7 O -0.53 -8.60 15.87 5.27 0.08 -8.51 16 8 N -0.61 -6.29 2.87 -182.85 -0.53 -6.82 16 9 C 0.07 0.46 9.02 59.85 0.54 1.00 16 10 C 0.12 1.39 5.68 -4.04 -0.02 1.36 16 11 C 0.05 0.62 6.01 -3.82 -0.02 0.59 16 12 N -0.67 -11.23 6.13 -115.05 -0.70 -11.93 16 13 C 0.05 0.97 6.17 -4.97 -0.03 0.94 16 14 C 0.44 10.72 7.82 -10.98 -0.09 10.63 16 15 O -0.58 -16.15 15.78 5.55 0.09 -16.07 16 16 N -0.56 -14.64 5.29 -10.96 -0.06 -14.69 16 17 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 18 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.90 13.05 55.50 0.72 -24.18 16 21 Si 0.93 21.33 29.55 -169.99 -5.02 16.30 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 C 0.13 1.44 7.26 -82.02 -0.60 0.85 16 26 C -0.07 -0.73 9.91 36.00 0.36 -0.38 16 27 N -0.30 -3.18 12.33 33.89 0.42 -2.76 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.10 0.07 8.06 -51.93 -0.42 -0.34 16 33 H 0.18 0.67 6.25 -52.49 -0.33 0.34 16 34 H 0.05 0.22 7.32 -51.93 -0.38 -0.16 16 35 H 0.08 0.45 8.03 -51.93 -0.42 0.03 16 36 H 0.07 0.41 5.89 -51.93 -0.31 0.10 16 37 H 0.09 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.09 1.16 7.36 -51.92 -0.38 0.78 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.35 6.21 8.43 -39.29 -0.33 5.88 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 44 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 45 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.08 0.90 7.70 -51.92 -0.40 0.50 16 LS Contribution 404.01 15.07 6.09 6.09 Total: -1.00 -36.51 404.01 -7.14 -43.65 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -7.44 Total: 10.56 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: -0.57 Total: 11.33 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -0.37 Total: -63.35 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: 0.17 Total: -24.58 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.51 -7.14 -43.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731959636.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.791 kcal (2) G-P(sol) polarization free energy of solvation -36.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds