Wall clock time and date at job start Tue Mar 31 2020 20:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.46812 * 2 1 4 4 C 1.34268 * 125.74950 * 125.30921 * 3 2 1 5 5 C 1.38045 * 107.41324 * 180.10688 * 4 3 2 6 6 C 1.47429 * 126.41316 * 179.86836 * 5 4 3 7 7 O 1.21603 * 120.00033 * 142.52629 * 6 5 4 8 8 N 1.34781 * 120.00208 * 322.80926 * 6 5 4 9 9 C 1.46499 * 119.99761 * 4.51913 * 8 6 5 10 10 C 1.46500 * 120.00205 * 184.51310 * 8 6 5 11 11 C 1.53001 * 109.46510 * 89.99724 * 10 8 6 12 12 N 1.46908 * 109.46839 * 179.97438 * 11 10 8 13 13 C 1.46904 * 110.99686 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46490 * 179.97438 * 13 12 11 15 15 O 1.21293 * 120.00705 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99642 * 180.02562 * 14 13 12 17 17 C 1.37102 * 119.99741 * 180.02562 * 16 14 13 18 18 H 1.07996 * 119.99899 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99615 * 180.02562 * 17 16 14 20 20 N 1.31406 * 120.00213 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99863 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46961 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47090 * 120.00105 * 21 19 17 24 24 H 1.48495 * 109.47078 * 240.00370 * 21 19 17 25 25 C 1.41289 * 107.17367 * 359.61343 * 5 4 3 26 26 C 1.50696 * 125.99076 * 180.27758 * 25 5 4 27 27 N 1.30448 * 108.02263 * 0.23586 * 25 5 4 28 28 H 1.08997 * 109.47412 * 299.99731 * 1 2 3 29 29 H 1.09008 * 109.46852 * 59.99835 * 1 2 3 30 30 H 1.09002 * 109.47409 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47001 * 240.00671 * 2 1 3 32 32 H 1.09000 * 109.47152 * 120.00132 * 2 1 3 33 33 H 1.07990 * 126.29281 * 359.95687 * 4 3 2 34 34 H 1.08996 * 109.47454 * 84.77325 * 9 8 6 35 35 H 1.09004 * 109.46864 * 204.77440 * 9 8 6 36 36 H 1.08999 * 109.47066 * 324.77205 * 9 8 6 37 37 H 1.08996 * 109.47416 * 209.99769 * 10 8 6 38 38 H 1.09007 * 109.47160 * 330.00531 * 10 8 6 39 39 H 1.08999 * 109.47814 * 300.00168 * 11 10 8 40 40 H 1.08999 * 109.46952 * 60.00332 * 11 10 8 41 41 H 1.00900 * 110.99405 * 56.05425 * 12 11 10 42 42 H 1.08990 * 109.47212 * 299.99979 * 13 12 11 43 43 H 1.08998 * 109.46972 * 60.00790 * 13 12 11 44 44 H 0.96998 * 120.00412 * 0.02562 * 16 14 13 45 45 H 0.96998 * 120.00449 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.47584 * 89.99191 * 26 25 5 47 47 H 1.09000 * 109.47309 * 209.99486 * 26 25 5 48 48 H 1.09007 * 109.47215 * 329.99736 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8735 1.9109 0.8892 5 6 3.0717 3.2307 0.5363 6 6 3.9339 4.2029 1.2327 7 8 4.5718 5.0172 0.5934 8 7 4.0194 4.1855 2.5777 9 6 3.3348 3.1396 3.3417 10 6 4.7971 5.2123 3.2756 11 6 3.8924 6.4017 3.6039 12 7 4.6720 7.4312 4.3043 13 6 3.8337 8.5909 4.6368 14 6 4.6659 9.6231 5.3532 15 8 5.8416 9.4136 5.5654 16 7 4.1036 10.7792 5.7581 17 6 4.8607 11.7185 6.4093 18 1 5.9077 11.5322 6.5975 19 6 4.2809 12.9101 6.8272 20 7 3.0071 13.1369 6.5978 21 14 5.3123 14.1897 7.7152 22 1 6.7067 13.6962 7.8480 23 1 5.3074 15.4553 6.9384 24 1 4.7429 14.4348 9.0645 25 6 2.2982 3.4737 -0.6209 26 6 2.2075 4.7797 -1.3672 27 7 1.6771 2.3692 -0.9305 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 3.3219 1.3993 1.7279 34 1 3.9668 2.2529 3.3909 35 1 3.1343 3.4993 4.3510 36 1 2.3941 2.8886 2.8518 37 1 5.2010 4.7973 4.1989 38 1 5.6161 5.5442 2.6374 39 1 3.4883 6.8169 2.6806 40 1 3.0733 6.0699 4.2420 41 1 5.4749 7.7092 3.7602 42 1 3.4294 9.0215 3.7209 43 1 3.0144 8.2739 5.2820 44 1 3.1633 10.9467 5.5887 45 1 2.6022 13.9686 6.8898 46 1 2.9789 4.8130 -2.1365 47 1 1.2258 4.8645 -1.8332 48 1 2.3522 5.6065 -0.6717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731959636.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:31 Heat of formation + Delta-G solvation = -16.981710 kcal Electronic energy + Delta-G solvation = -28281.523405 eV Core-core repulsion = 24179.314561 eV Total energy + Delta-G solvation = -4102.208844 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.52381 -40.49280 -40.11088 -37.45994 -36.24196 -35.72125 -35.70613 -33.28660 -32.55966 -31.76923 -30.29038 -28.76778 -28.07781 -27.30379 -25.78336 -24.39314 -23.46148 -22.52417 -21.39321 -21.00941 -20.00449 -19.85683 -18.19455 -17.89371 -17.62196 -17.01743 -16.96335 -16.70960 -16.46667 -16.03282 -15.87958 -15.44433 -15.31923 -15.09326 -14.93143 -14.73442 -14.24050 -14.16554 -13.95346 -13.79677 -13.65931 -13.52622 -13.39760 -13.26032 -13.10541 -12.94454 -12.90153 -12.81454 -12.71811 -12.40478 -12.29261 -12.10584 -12.06359 -11.71704 -11.51644 -10.95875 -10.39281 -10.34521 -10.02179 -9.76886 -9.55271 -9.42496 -8.46910 -5.95936 0.59688 1.11074 1.37158 1.41164 1.42427 1.57032 1.90199 2.03754 2.26956 2.30953 2.98656 3.20017 3.32716 3.54195 3.69059 3.87824 3.96138 4.06625 4.09687 4.17614 4.24846 4.30244 4.34399 4.38662 4.47340 4.51165 4.51786 4.57986 4.67630 4.69174 4.76954 4.80054 4.85653 4.90736 4.93604 4.99819 5.00425 5.25309 5.41093 5.46505 5.51467 5.84245 5.94322 6.06065 6.29241 6.39662 6.59005 6.59213 7.11951 7.21127 7.54954 8.10047 8.70791 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025194 B = 0.001693 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.125014 B =16534.510692 C =16722.103995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.354 5.354 4 C 0.120 3.880 5 C -0.315 4.315 6 C 0.589 3.411 7 O -0.583 6.583 8 N -0.607 5.607 9 C 0.066 3.934 10 C 0.125 3.875 11 C 0.055 3.945 12 N -0.674 5.674 13 C 0.066 3.934 14 C 0.438 3.562 15 O -0.621 6.621 16 N -0.573 5.573 17 C -0.335 4.335 18 H 0.080 0.920 19 C -0.014 4.014 20 N -0.921 5.921 21 Si 0.995 3.005 22 H -0.273 1.273 23 H -0.271 1.271 24 H -0.269 1.269 25 C 0.107 3.893 26 C -0.070 4.070 27 N -0.323 5.323 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.140 0.860 33 H 0.227 0.773 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.017 0.983 40 H 0.087 0.913 41 H 0.343 0.657 42 H 0.060 0.940 43 H 0.108 0.892 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.582 -31.364 -11.147 34.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.002 4.002 3 N -0.133 5.133 4 C -0.032 4.032 5 C -0.330 4.330 6 C 0.379 3.621 7 O -0.464 6.464 8 N -0.339 5.339 9 C -0.076 4.076 10 C 0.002 3.998 11 C -0.075 4.075 12 N -0.306 5.306 13 C -0.067 4.067 14 C 0.226 3.774 15 O -0.508 6.508 16 N -0.210 5.210 17 C -0.464 4.464 18 H 0.098 0.902 19 C -0.213 4.213 20 N -0.562 5.562 21 Si 0.819 3.181 22 H -0.198 1.198 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.060 4.060 26 C -0.129 4.129 27 N -0.146 5.146 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.158 0.842 33 H 0.243 0.757 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.082 0.918 39 H 0.035 0.965 40 H 0.105 0.895 41 H 0.162 0.838 42 H 0.078 0.922 43 H 0.126 0.874 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.103 0.897 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.562 -31.974 -11.482 35.035 hybrid contribution 0.379 1.952 -0.120 1.993 sum -8.183 -30.021 -11.602 33.209 Atomic orbital electron populations 1.22024 0.93440 1.04193 1.02314 1.22285 0.96464 0.74953 1.06540 1.48926 1.33416 1.11235 1.19689 1.23793 0.91600 0.92622 0.95207 1.20137 1.12743 0.96175 1.03907 1.17689 0.79939 0.82678 0.81799 1.90758 1.46497 1.42210 1.66915 1.47697 1.51535 1.29472 1.05236 1.22321 0.97567 0.90508 0.97190 1.21256 0.93213 0.87737 0.97643 1.22272 0.96929 0.92244 0.96065 1.60056 1.09764 1.11087 1.49740 1.21525 0.95519 0.90069 0.99539 1.20803 0.88613 0.83878 0.84137 1.90489 1.18681 1.79691 1.61930 1.41933 1.12491 1.15167 1.51401 1.19736 0.95181 0.97181 1.34342 0.90221 1.26070 0.97300 0.99732 0.98215 1.69678 1.11896 1.27208 1.47378 0.84841 0.77950 0.77371 0.77977 1.19751 1.19655 1.19463 1.22573 0.93962 0.95583 0.93838 1.20173 1.03418 0.89875 0.99429 1.77078 1.25525 0.97196 1.14770 0.92462 0.93399 0.88055 0.88694 0.84237 0.75672 0.89606 0.89352 0.90200 0.87594 0.91756 0.96453 0.89460 0.83837 0.92240 0.87351 0.76974 0.91271 0.90141 0.89709 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 10.09 71.98 0.73 -0.08 16 2 C 0.12 0.46 7.21 86.38 0.62 1.08 16 3 N -0.35 -4.57 3.65 -346.29 -1.26 -5.83 16 4 C 0.12 1.40 9.16 84.27 0.77 2.17 16 5 C -0.31 -6.47 5.39 -20.15 -0.11 -6.57 16 6 C 0.59 14.71 7.38 86.66 0.64 15.35 16 7 O -0.58 -19.83 15.87 -4.04 -0.06 -19.90 16 8 N -0.61 -11.57 2.87 -850.66 -2.44 -14.02 16 9 C 0.07 0.58 9.02 127.77 1.15 1.73 16 10 C 0.12 2.83 5.68 86.38 0.49 3.32 16 11 C 0.06 1.42 6.01 86.30 0.52 1.94 16 12 N -0.67 -22.42 6.13 -517.92 -3.17 -25.60 16 13 C 0.07 2.39 6.17 85.56 0.53 2.91 16 14 C 0.44 21.54 7.82 87.66 0.69 22.23 16 15 O -0.62 -35.34 15.78 -3.07 -0.05 -35.39 16 16 N -0.57 -30.17 5.29 -306.98 -1.62 -31.79 16 17 C -0.33 -19.41 9.68 84.04 0.81 -18.60 16 18 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 19 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 20 N -0.92 -50.39 13.05 21.66 0.28 -50.11 16 21 Si 1.00 43.53 29.55 68.60 2.03 45.56 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 25 C 0.11 2.45 7.26 43.51 0.32 2.76 16 26 C -0.07 -1.52 9.91 71.23 0.71 -0.81 16 27 N -0.32 -6.74 12.33 -46.68 -0.58 -7.31 16 28 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.14 -0.53 8.06 -2.39 -0.02 -0.55 16 33 H 0.23 0.45 6.25 -2.92 -0.02 0.44 16 34 H 0.09 0.27 7.32 -2.39 -0.02 0.25 16 35 H 0.09 0.66 8.03 -2.38 -0.02 0.64 16 36 H 0.08 0.61 5.89 -2.39 -0.01 0.59 16 37 H 0.11 2.03 8.07 -2.39 -0.02 2.01 16 38 H 0.06 1.77 7.36 -2.38 -0.02 1.75 16 39 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.34 12.38 8.43 -89.69 -0.76 11.62 16 42 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 44 H 0.40 19.82 7.90 -92.71 -0.73 19.08 16 45 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 46 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.07 1.62 7.70 -2.38 -0.02 1.61 16 Total: -1.00 -82.84 404.01 0.95 -81.89 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: -0.50 Total: 35.34 kcal Atomic # 6 Polarization: 18.83 SS G_CDS: 8.33 Total: 27.16 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -8.80 Total: -134.66 kcal Atomic # 8 Polarization: -55.17 SS G_CDS: -0.11 Total: -55.28 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -82.84 0.95 -81.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731959636.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.905 kcal (2) G-P(sol) polarization free energy of solvation -82.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds