Wall clock time and date at job start Tue Mar 31 2020 20:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47137 * 2 1 4 4 C 1.35031 * 124.88780 * 124.97758 * 3 2 1 5 5 C 1.35364 * 107.22966 * 179.76194 * 4 3 2 6 6 C 1.41502 * 105.50655 * 0.36065 * 5 4 3 7 7 C 1.47707 * 126.52252 * 179.90375 * 6 5 4 8 8 O 1.21574 * 119.99902 * 5.81191 * 7 6 5 9 9 N 1.34773 * 120.00270 * 185.82061 * 7 6 5 10 10 C 1.46511 * 119.99854 * 356.02928 * 9 7 6 11 11 C 1.46496 * 120.00306 * 176.03238 * 9 7 6 12 12 H 1.09000 * 109.47018 * 359.97438 * 11 9 7 13 13 C 1.53004 * 109.47008 * 119.99596 * 11 9 7 14 14 C 1.52993 * 109.47351 * 239.99522 * 11 9 7 15 15 N 1.46900 * 109.47024 * 54.99970 * 14 11 9 16 16 C 1.46906 * 111.00071 * 179.97438 * 15 14 11 17 17 C 1.50697 * 109.47031 * 179.97438 * 16 15 14 18 18 O 1.21291 * 120.00157 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00260 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00682 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99598 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00262 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00340 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99821 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47113 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47050 * 119.99715 * 24 22 20 27 27 H 1.48497 * 109.47271 * 239.99547 * 24 22 20 28 28 N 1.28471 * 124.88488 * 304.97801 * 3 2 1 29 29 H 1.09007 * 109.46997 * 299.99815 * 1 2 3 30 30 H 1.08995 * 109.47592 * 60.00000 * 1 2 3 31 31 H 1.09005 * 109.46838 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46997 * 240.00185 * 2 1 3 33 33 H 1.08995 * 109.47592 * 120.00000 * 2 1 3 34 34 H 1.08000 * 126.38701 * 0.03295 * 4 3 2 35 35 H 1.08001 * 127.25175 * 180.23552 * 5 4 3 36 36 H 1.08996 * 109.46996 * 275.66748 * 10 9 7 37 37 H 1.09001 * 109.46803 * 35.66269 * 10 9 7 38 38 H 1.08998 * 109.47021 * 155.66858 * 10 9 7 39 39 H 1.09002 * 109.47335 * 180.02562 * 13 11 9 40 40 H 1.09000 * 109.47472 * 299.99753 * 13 11 9 41 41 H 1.09000 * 109.47094 * 60.00215 * 13 11 9 42 42 H 1.08994 * 109.47314 * 295.00019 * 14 11 9 43 43 H 1.08998 * 109.47228 * 174.99895 * 14 11 9 44 44 H 1.00898 * 110.99824 * 303.95479 * 15 14 11 45 45 H 1.08992 * 109.47506 * 300.00320 * 16 15 14 46 46 H 1.09000 * 109.46884 * 60.00379 * 16 15 14 47 47 H 0.97004 * 119.99639 * 0.02562 * 19 17 16 48 48 H 0.96993 * 120.00530 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8744 1.8977 0.9076 5 6 3.0866 3.1908 0.5680 6 6 2.3005 3.4124 -0.5875 7 6 2.1866 4.6758 -1.3442 8 8 2.8861 5.6256 -1.0501 9 7 1.3072 4.7757 -2.3606 10 6 0.5266 3.6059 -2.7714 11 6 1.1319 6.0538 -3.0547 12 1 1.7914 6.8007 -2.6127 13 6 1.4759 5.8814 -4.5355 14 6 -0.3212 6.5128 -2.9188 15 7 -0.6879 6.5632 -1.4972 16 6 -2.0797 7.0017 -1.3277 17 6 -2.4189 7.0403 0.1401 18 8 -1.5834 6.7333 0.9640 19 7 -3.6507 7.4160 0.5374 20 6 -3.9593 7.4517 1.8728 21 1 -3.2151 7.1792 2.6064 22 6 -5.2295 7.8386 2.2823 23 7 -6.1349 8.1707 1.3897 24 14 -5.6495 7.8879 4.1018 25 1 -4.4650 7.4716 4.8947 26 1 -6.0400 9.2692 4.4824 27 1 -6.7777 6.9616 4.3746 28 7 1.6936 2.2753 -0.8635 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.3120 1.3752 1.7454 35 1 3.7206 3.9039 1.0739 36 1 1.1138 3.0019 -3.4631 37 1 0.2743 3.0109 -1.8936 38 1 -0.3890 3.9345 -3.2631 39 1 1.3459 6.8324 -5.0519 40 1 2.5112 5.5544 -4.6324 41 1 0.8161 5.1346 -4.9772 42 1 -0.9740 5.8111 -3.4377 43 1 -0.4316 7.5044 -3.3578 44 1 -0.5327 5.6711 -1.0519 45 1 -2.2019 7.9966 -1.7555 46 1 -2.7450 6.3035 -1.8356 47 1 -4.3191 7.6612 -0.1215 48 1 -7.0214 8.4411 1.6755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732443282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:59 Heat of formation + Delta-G solvation = 25.453516 kcal Electronic energy + Delta-G solvation = -29744.551979 eV Core-core repulsion = 25644.183265 eV Total energy + Delta-G solvation = -4100.368714 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.74184 -39.75335 -38.18600 -36.72957 -34.83253 -34.47770 -33.70383 -31.96930 -31.14187 -30.63499 -29.90696 -27.50402 -26.88165 -25.25859 -24.80003 -23.21660 -22.62348 -21.49043 -20.58691 -19.29692 -18.99786 -17.82977 -17.55721 -16.99285 -16.38360 -16.25933 -15.78991 -15.47581 -14.98428 -14.69022 -14.46135 -14.28201 -13.98322 -13.80045 -13.71917 -13.48444 -13.28904 -13.07233 -12.90563 -12.66041 -12.51386 -12.49832 -12.34600 -12.22083 -11.80095 -11.73904 -11.54163 -11.53818 -11.33485 -11.04829 -10.87564 -10.59370 -10.31055 -10.17889 -9.89321 -9.47026 -9.31083 -9.11488 -8.63593 -8.32365 -7.94618 -7.88598 -6.37172 -3.77495 1.58531 2.11334 2.28011 3.03679 3.19196 3.29230 3.37214 3.54016 3.97599 4.07964 4.14532 4.35985 4.51412 4.57466 4.65318 4.75018 4.95825 5.06011 5.10421 5.17654 5.22921 5.25594 5.26908 5.31995 5.41699 5.52409 5.55973 5.61716 5.64502 5.68596 5.76468 5.77137 5.85857 5.91990 5.98181 6.05464 6.17312 6.32749 6.35073 6.61179 6.74705 7.32241 7.42076 7.59968 7.76813 7.81907 8.12218 8.32720 8.67428 9.23422 9.60159 10.12619 10.80911 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009695 B = 0.003101 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.415656 B = 9026.608972 C =10719.375893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.118 3.882 3 N -0.287 5.287 4 C -0.020 4.020 5 C -0.176 4.176 6 C -0.009 4.009 7 C 0.608 3.392 8 O -0.525 6.525 9 N -0.599 5.599 10 C 0.073 3.927 11 C 0.138 3.862 12 H 0.111 0.889 13 C -0.157 4.157 14 C 0.050 3.950 15 N -0.664 5.664 16 C 0.051 3.949 17 C 0.442 3.558 18 O -0.579 6.579 19 N -0.566 5.566 20 C -0.296 4.296 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 N -0.258 5.258 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.180 0.820 35 H 0.162 0.838 36 H 0.052 0.948 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.028 0.972 43 H 0.083 0.917 44 H 0.349 0.651 45 H 0.086 0.914 46 H 0.040 0.960 47 H 0.392 0.608 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.742 -17.012 -10.680 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.002 4.002 3 N -0.075 5.075 4 C -0.162 4.162 5 C -0.204 4.204 6 C -0.169 4.169 7 C 0.394 3.606 8 O -0.399 6.399 9 N -0.333 5.333 10 C -0.071 4.071 11 C 0.034 3.966 12 H 0.129 0.871 13 C -0.215 4.215 14 C -0.081 4.081 15 N -0.297 5.297 16 C -0.082 4.082 17 C 0.227 3.773 18 O -0.462 6.462 19 N -0.203 5.203 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 N -0.094 5.094 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.197 0.803 35 H 0.179 0.821 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.046 0.954 43 H 0.101 0.899 44 H 0.169 0.831 45 H 0.104 0.896 46 H 0.058 0.942 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.972 -16.645 -10.576 24.169 hybrid contribution -0.877 -0.367 0.777 1.228 sum 13.095 -17.012 -9.799 23.599 Atomic orbital electron populations 1.22094 0.92965 1.03374 1.04297 1.21976 0.96802 0.76893 1.04504 1.45744 1.32374 1.10357 1.19054 1.22845 0.99228 0.95607 0.98545 1.21776 1.04331 0.95993 0.98267 1.21913 1.02225 0.93041 0.99727 1.16904 0.79747 0.85081 0.78866 1.90786 1.44027 1.37927 1.67146 1.47641 1.40693 1.11385 1.33569 1.22088 0.95087 0.87623 1.02255 1.21199 0.97385 0.85702 0.92264 0.87084 1.22087 1.01962 1.02420 0.95074 1.22343 0.94726 1.00856 0.90166 1.59989 1.21541 1.36812 1.11369 1.21677 0.89024 1.01047 0.96426 1.19842 0.83542 0.84410 0.89500 1.90544 1.48306 1.53330 1.54061 1.41861 1.10807 1.59214 1.08436 1.19755 0.97480 1.42188 0.83180 0.87947 1.25242 0.95501 0.97238 1.00028 1.69618 1.05048 1.46014 1.33836 0.85814 0.78490 0.77786 0.82347 1.19242 1.20730 1.20839 1.73589 1.21488 0.98270 1.16056 0.91494 0.90773 0.90298 0.89062 0.88017 0.80300 0.82083 0.92895 0.88540 0.91753 0.91180 0.92115 0.92420 0.95366 0.89860 0.83104 0.89556 0.94169 0.77520 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.02 37.16 0.37 -0.71 16 2 C 0.12 0.67 7.12 -4.04 -0.03 0.65 16 3 N -0.29 -2.86 3.41 -61.33 -0.21 -3.07 16 4 C -0.02 -0.20 11.40 -17.17 -0.20 -0.39 16 5 C -0.18 -2.31 10.81 -39.36 -0.43 -2.74 16 6 C -0.01 -0.14 6.83 -82.77 -0.57 -0.71 16 7 C 0.61 10.08 7.68 -12.39 -0.10 9.98 16 8 O -0.53 -10.33 16.27 5.30 0.09 -10.24 16 9 N -0.60 -8.29 1.83 -175.10 -0.32 -8.62 16 10 C 0.07 0.82 8.67 59.85 0.52 1.34 16 11 C 0.14 1.79 2.94 -67.93 -0.20 1.59 16 12 H 0.11 1.73 6.90 -51.93 -0.36 1.37 16 13 C -0.16 -1.50 9.19 37.16 0.34 -1.16 16 14 C 0.05 0.67 5.00 -3.83 -0.02 0.65 16 15 N -0.66 -12.11 6.12 -115.07 -0.70 -12.81 16 16 C 0.05 0.97 6.17 -4.97 -0.03 0.94 16 17 C 0.44 11.06 7.82 -10.99 -0.09 10.97 16 18 O -0.58 -16.79 15.78 5.55 0.09 -16.71 16 19 N -0.57 -14.90 5.29 -10.97 -0.06 -14.96 16 20 C -0.30 -8.54 9.68 -14.93 -0.14 -8.68 16 21 H 0.10 3.11 7.16 -52.49 -0.38 2.74 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -25.08 13.05 55.50 0.72 -24.35 16 24 Si 0.93 21.54 29.55 -169.99 -5.02 16.52 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 N -0.26 -3.23 8.17 33.42 0.27 -2.96 16 29 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.10 0.31 8.04 -51.93 -0.42 -0.11 16 34 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.16 2.03 8.06 -52.49 -0.42 1.60 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.10 1.20 5.29 -51.93 -0.27 0.92 16 38 H 0.06 0.65 6.54 -51.93 -0.34 0.31 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 42 H 0.03 0.34 6.86 -51.93 -0.36 -0.02 16 43 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.35 6.89 7.56 -39.29 -0.30 6.60 16 45 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.39 9.81 7.90 -40.82 -0.32 9.49 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 399.31 15.07 6.02 6.02 Total: -1.00 -36.83 399.31 -7.13 -43.96 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -7.35 Total: 15.01 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: -0.65 Total: 12.21 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -0.29 Total: -66.77 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: 0.17 Total: -26.95 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.83 -7.13 -43.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732443282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.414 kcal (2) G-P(sol) polarization free energy of solvation -36.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds