Wall clock time and date at job start Tue Mar 31 2020 20:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47137 * 2 1 4 4 C 1.35031 * 124.88780 * 124.97758 * 3 2 1 5 5 C 1.35364 * 107.22966 * 179.76194 * 4 3 2 6 6 C 1.41502 * 105.50655 * 0.36065 * 5 4 3 7 7 C 1.47707 * 126.52252 * 179.90375 * 6 5 4 8 8 O 1.21574 * 119.99902 * 5.81191 * 7 6 5 9 9 N 1.34773 * 120.00270 * 185.82061 * 7 6 5 10 10 C 1.46511 * 119.99854 * 356.02928 * 9 7 6 11 11 C 1.46496 * 120.00306 * 176.03238 * 9 7 6 12 12 H 1.09000 * 109.47018 * 359.97438 * 11 9 7 13 13 C 1.53004 * 109.47008 * 119.99596 * 11 9 7 14 14 C 1.52993 * 109.47351 * 239.99522 * 11 9 7 15 15 N 1.46900 * 109.47024 * 54.99970 * 14 11 9 16 16 C 1.46906 * 111.00071 * 179.97438 * 15 14 11 17 17 C 1.50697 * 109.47031 * 179.97438 * 16 15 14 18 18 O 1.21291 * 120.00157 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00260 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00682 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99598 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00262 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00340 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99821 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47113 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47050 * 119.99715 * 24 22 20 27 27 H 1.48497 * 109.47271 * 239.99547 * 24 22 20 28 28 N 1.28471 * 124.88488 * 304.97801 * 3 2 1 29 29 H 1.09007 * 109.46997 * 299.99815 * 1 2 3 30 30 H 1.08995 * 109.47592 * 60.00000 * 1 2 3 31 31 H 1.09005 * 109.46838 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46997 * 240.00185 * 2 1 3 33 33 H 1.08995 * 109.47592 * 120.00000 * 2 1 3 34 34 H 1.08000 * 126.38701 * 0.03295 * 4 3 2 35 35 H 1.08001 * 127.25175 * 180.23552 * 5 4 3 36 36 H 1.08996 * 109.46996 * 275.66748 * 10 9 7 37 37 H 1.09001 * 109.46803 * 35.66269 * 10 9 7 38 38 H 1.08998 * 109.47021 * 155.66858 * 10 9 7 39 39 H 1.09002 * 109.47335 * 180.02562 * 13 11 9 40 40 H 1.09000 * 109.47472 * 299.99753 * 13 11 9 41 41 H 1.09000 * 109.47094 * 60.00215 * 13 11 9 42 42 H 1.08994 * 109.47314 * 295.00019 * 14 11 9 43 43 H 1.08998 * 109.47228 * 174.99895 * 14 11 9 44 44 H 1.00898 * 110.99824 * 303.95479 * 15 14 11 45 45 H 1.08992 * 109.47506 * 300.00320 * 16 15 14 46 46 H 1.09000 * 109.46884 * 60.00379 * 16 15 14 47 47 H 0.97004 * 119.99639 * 0.02562 * 19 17 16 48 48 H 0.96993 * 120.00530 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8744 1.8977 0.9076 5 6 3.0866 3.1908 0.5680 6 6 2.3005 3.4124 -0.5875 7 6 2.1866 4.6758 -1.3442 8 8 2.8861 5.6256 -1.0501 9 7 1.3072 4.7757 -2.3606 10 6 0.5266 3.6059 -2.7714 11 6 1.1319 6.0538 -3.0547 12 1 1.7914 6.8007 -2.6127 13 6 1.4759 5.8814 -4.5355 14 6 -0.3212 6.5128 -2.9188 15 7 -0.6879 6.5632 -1.4972 16 6 -2.0797 7.0017 -1.3277 17 6 -2.4189 7.0403 0.1401 18 8 -1.5834 6.7333 0.9640 19 7 -3.6507 7.4160 0.5374 20 6 -3.9593 7.4517 1.8728 21 1 -3.2151 7.1792 2.6064 22 6 -5.2295 7.8386 2.2823 23 7 -6.1349 8.1707 1.3897 24 14 -5.6495 7.8879 4.1018 25 1 -4.4650 7.4716 4.8947 26 1 -6.0400 9.2692 4.4824 27 1 -6.7777 6.9616 4.3746 28 7 1.6936 2.2753 -0.8635 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.3120 1.3752 1.7454 35 1 3.7206 3.9039 1.0739 36 1 1.1138 3.0019 -3.4631 37 1 0.2743 3.0109 -1.8936 38 1 -0.3890 3.9345 -3.2631 39 1 1.3459 6.8324 -5.0519 40 1 2.5112 5.5544 -4.6324 41 1 0.8161 5.1346 -4.9772 42 1 -0.9740 5.8111 -3.4377 43 1 -0.4316 7.5044 -3.3578 44 1 -0.5327 5.6711 -1.0519 45 1 -2.2019 7.9966 -1.7555 46 1 -2.7450 6.3035 -1.8356 47 1 -4.3191 7.6612 -0.1215 48 1 -7.0214 8.4411 1.6755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732443282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:59 Heat of formation + Delta-G solvation = -2.176000 kcal Electronic energy + Delta-G solvation = -29745.750085 eV Core-core repulsion = 25644.183265 eV Total energy + Delta-G solvation = -4101.566820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.61762 -40.91489 -40.12394 -38.00548 -36.17137 -35.63401 -35.35316 -33.32560 -32.94701 -31.53214 -30.68631 -28.99475 -27.88109 -26.73444 -25.94958 -24.60254 -23.50947 -22.33371 -21.56631 -21.08929 -20.17558 -19.90968 -18.45641 -18.02197 -17.89867 -17.34556 -17.00180 -16.79843 -16.41648 -16.20093 -15.90790 -15.45427 -15.31179 -15.08363 -14.97073 -14.57152 -14.38051 -14.18381 -14.02030 -13.98705 -13.55899 -13.39684 -13.27431 -13.18793 -13.08261 -12.97863 -12.95420 -12.80151 -12.49633 -12.40984 -12.25762 -12.13423 -11.92614 -11.55913 -11.54092 -11.10083 -10.40702 -10.18891 -10.05391 -10.03905 -9.65693 -9.28807 -8.48956 -5.97894 0.56536 1.21054 1.34484 1.39574 1.54219 1.55727 2.02018 2.03561 2.27567 2.39602 2.89081 3.17782 3.29300 3.47219 3.78365 3.94925 3.97859 4.06368 4.16996 4.21726 4.25427 4.25687 4.33066 4.37553 4.45845 4.54698 4.66987 4.68625 4.72729 4.74112 4.78500 4.79992 4.83256 4.88077 4.98484 5.12108 5.24896 5.26881 5.36379 5.38605 5.64775 5.87217 5.95187 6.09763 6.27654 6.34800 6.58262 6.87864 7.10504 7.17556 7.53035 8.09741 8.68737 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009695 B = 0.003101 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.415656 B = 9026.608972 C =10719.375893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.110 3.890 3 N -0.281 5.281 4 C 0.001 3.999 5 C -0.214 4.214 6 C -0.047 4.047 7 C 0.595 3.405 8 O -0.575 6.575 9 N -0.595 5.595 10 C 0.075 3.925 11 C 0.135 3.865 12 H 0.077 0.923 13 C -0.145 4.145 14 C 0.053 3.947 15 N -0.687 5.687 16 C 0.066 3.934 17 C 0.434 3.566 18 O -0.627 6.627 19 N -0.570 5.570 20 C -0.335 4.335 21 H 0.074 0.926 22 C -0.011 4.011 23 N -0.918 5.918 24 Si 0.993 3.007 25 H -0.276 1.276 26 H -0.269 1.269 27 H -0.267 1.267 28 N -0.257 5.257 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.138 0.862 34 H 0.225 0.775 35 H 0.153 0.847 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.100 0.900 44 H 0.336 0.664 45 H 0.108 0.892 46 H 0.069 0.931 47 H 0.397 0.603 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.617 -19.018 -11.676 25.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.008 4.008 3 N -0.070 5.070 4 C -0.142 4.142 5 C -0.242 4.242 6 C -0.205 4.205 7 C 0.383 3.617 8 O -0.454 6.454 9 N -0.326 5.326 10 C -0.067 4.067 11 C 0.032 3.968 12 H 0.096 0.904 13 C -0.203 4.203 14 C -0.076 4.076 15 N -0.320 5.320 16 C -0.066 4.066 17 C 0.222 3.778 18 O -0.513 6.513 19 N -0.208 5.208 20 C -0.465 4.465 21 H 0.092 0.908 22 C -0.210 4.210 23 N -0.559 5.559 24 Si 0.816 3.184 25 H -0.201 1.201 26 H -0.194 1.194 27 H -0.192 1.192 28 N -0.095 5.095 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.156 0.844 34 H 0.241 0.759 35 H 0.170 0.830 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.118 0.882 44 H 0.155 0.845 45 H 0.126 0.874 46 H 0.087 0.913 47 H 0.231 0.769 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.791 -18.662 -11.651 25.449 hybrid contribution -0.558 0.166 1.081 1.228 sum 12.234 -18.496 -10.569 24.565 Atomic orbital electron populations 1.22084 0.93622 1.04545 1.02295 1.22457 0.96230 0.74772 1.07355 1.46283 1.31349 1.11311 1.18040 1.23406 0.97710 0.94386 0.98677 1.21973 1.05496 0.97867 0.98846 1.21870 1.04280 0.93361 1.00956 1.17337 0.79726 0.85334 0.79324 1.90732 1.46194 1.39686 1.68749 1.47760 1.39860 1.12337 1.32692 1.22172 0.95601 0.86823 1.02129 1.21264 0.96607 0.84765 0.94189 0.90426 1.22004 1.01989 1.04041 0.92300 1.22461 0.95027 1.02588 0.87569 1.59982 1.21098 1.36380 1.14499 1.21552 0.90137 1.03081 0.91815 1.20944 0.82403 0.82483 0.91976 1.90513 1.49524 1.55019 1.56254 1.41900 1.11527 1.59517 1.07833 1.19675 0.97926 1.44819 0.84082 0.90768 1.26026 0.94707 0.95925 1.04390 1.69668 1.05428 1.45293 1.35548 0.84882 0.78106 0.78491 0.76901 1.20112 1.19431 1.19202 1.73534 1.21145 0.97994 1.16821 0.93638 0.92581 0.87543 0.87036 0.84391 0.75858 0.82958 0.91257 0.89700 0.90109 0.89333 0.92663 0.90542 0.92729 0.88206 0.84522 0.87404 0.91308 0.76864 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 10.02 71.98 0.72 -1.14 16 2 C 0.11 0.94 7.12 86.38 0.61 1.55 16 3 N -0.28 -5.22 3.41 -347.96 -1.19 -6.40 16 4 C 0.00 0.02 11.40 83.54 0.95 0.97 16 5 C -0.21 -5.93 10.81 22.41 0.24 -5.69 16 6 C -0.05 -1.47 6.83 42.46 0.29 -1.18 16 7 C 0.59 21.18 7.68 86.75 0.67 21.85 16 8 O -0.58 -24.81 16.27 -3.95 -0.06 -24.87 16 9 N -0.59 -16.85 1.83 -826.15 -1.51 -18.37 16 10 C 0.08 1.64 8.67 127.77 1.11 2.75 16 11 C 0.13 3.51 2.94 44.99 0.13 3.64 16 12 H 0.08 2.56 6.90 -2.39 -0.02 2.55 16 13 C -0.15 -2.53 9.19 71.98 0.66 -1.86 16 14 C 0.05 1.34 5.00 86.30 0.43 1.77 16 15 N -0.69 -25.09 6.12 -517.96 -3.17 -28.26 16 16 C 0.07 2.46 6.17 85.55 0.53 2.99 16 17 C 0.43 22.22 7.82 87.66 0.69 22.90 16 18 O -0.63 -37.98 15.78 -3.06 -0.05 -38.03 16 19 N -0.57 -30.57 5.29 -307.00 -1.62 -32.20 16 20 C -0.34 -19.82 9.68 84.04 0.81 -19.01 16 21 H 0.07 4.73 7.16 -2.91 -0.02 4.71 16 22 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 23 N -0.92 -50.29 13.05 21.66 0.28 -50.00 16 24 Si 0.99 43.97 29.55 68.60 2.03 45.99 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 N -0.26 -6.47 8.17 -48.18 -0.39 -6.87 16 29 H 0.04 0.70 8.14 -2.38 -0.02 0.69 16 30 H 0.06 0.83 8.08 -2.39 -0.02 0.81 16 31 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.14 0.23 8.04 -2.39 -0.02 0.21 16 34 H 0.22 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.15 4.28 8.06 -2.91 -0.02 4.25 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 2.11 5.29 -2.39 -0.01 2.10 16 38 H 0.08 1.47 6.54 -2.39 -0.02 1.45 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 1.06 7.67 -2.39 -0.02 1.04 16 42 H 0.05 1.13 6.86 -2.39 -0.02 1.11 16 43 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.34 13.67 7.56 -89.70 -0.68 12.99 16 45 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 46 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.40 19.97 7.90 -92.71 -0.73 19.24 16 48 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -85.78 399.31 2.21 -83.57 By element: Atomic # 1 Polarization: 46.42 SS G_CDS: -0.42 Total: 46.00 kcal Atomic # 6 Polarization: 21.12 SS G_CDS: 8.31 Total: 29.43 kcal Atomic # 7 Polarization: -134.49 SS G_CDS: -7.60 Total: -142.10 kcal Atomic # 8 Polarization: -62.79 SS G_CDS: -0.11 Total: -62.90 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -85.78 2.21 -83.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732443282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.398 kcal (2) G-P(sol) polarization free energy of solvation -85.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds