Wall clock time and date at job start Tue Mar 31 2020 19:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47266 * 2 1 4 4 N 1.46498 * 109.47582 * 119.99732 * 2 1 3 5 5 C 1.36943 * 119.99933 * 275.00344 * 4 2 1 6 6 H 1.07993 * 120.00369 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99599 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00558 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99666 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47317 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46928 * 120.00633 * 9 7 5 12 12 H 1.48497 * 109.47477 * 240.00416 * 9 7 5 13 13 C 1.52997 * 109.47096 * 240.00091 * 2 1 3 14 14 H 1.09000 * 109.52507 * 300.07302 * 13 2 1 15 15 C 1.53042 * 109.50035 * 60.16190 * 13 2 1 16 16 C 1.53040 * 109.53871 * 181.31758 * 15 13 2 17 17 C 1.53627 * 109.24108 * 298.50936 * 16 15 13 18 18 N 1.46927 * 108.54183 * 54.85576 * 17 16 15 19 19 C 1.34777 * 120.62638 * 126.37295 * 18 17 16 20 20 O 1.21278 * 119.99854 * 179.72148 * 19 18 17 21 21 C 1.50703 * 120.00161 * 359.71455 * 19 18 17 22 22 N 1.46505 * 109.47064 * 180.02562 * 21 19 18 23 23 N 1.40163 * 126.35035 * 269.69143 * 22 21 19 24 24 C 1.29400 * 108.14000 * 179.81423 * 23 22 21 25 25 N 1.37354 * 108.82715 * 0.44707 * 24 23 22 26 26 C 1.46507 * 125.83262 * 179.67500 * 25 24 23 27 27 C 1.34816 * 108.33805 * 359.71263 * 25 24 23 28 28 O 1.21809 * 126.30472 * 179.97438 * 27 25 24 29 29 C 1.46920 * 118.74032 * 306.09058 * 18 17 16 30 30 H 1.09007 * 109.47499 * 300.00079 * 1 2 3 31 31 H 1.08999 * 109.47621 * 60.00445 * 1 2 3 32 32 H 1.09000 * 109.47266 * 179.97438 * 1 2 3 33 33 H 0.96995 * 120.00076 * 94.99936 * 4 2 1 34 34 H 0.96992 * 120.00263 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.45388 * 301.33540 * 15 13 2 36 36 H 1.08998 * 109.46111 * 61.30652 * 15 13 2 37 37 H 1.08999 * 109.49509 * 58.58265 * 16 15 13 38 38 H 1.09002 * 109.49899 * 178.67947 * 16 15 13 39 39 H 1.09005 * 109.73796 * 295.11763 * 17 16 15 40 40 H 1.08995 * 109.66320 * 174.54985 * 17 16 15 41 41 H 1.09002 * 109.47152 * 60.00245 * 21 19 18 42 42 H 1.09001 * 109.46980 * 300.00345 * 21 19 18 43 43 H 1.07997 * 125.58708 * 180.13088 * 24 23 22 44 44 H 1.08999 * 109.47363 * 270.04252 * 26 25 24 45 45 H 1.09001 * 109.47137 * 30.04248 * 26 25 24 46 46 H 1.09003 * 109.47154 * 150.03654 * 26 25 24 47 47 H 1.09001 * 109.58920 * 173.64838 * 29 18 17 48 48 H 1.09001 * 109.58884 * 293.93521 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 2.1491 -0.0073 2.3758 6 1 1.8926 1.0406 2.4242 7 6 2.6114 -0.6618 3.5092 8 7 2.9246 -1.9388 3.4502 9 14 2.7905 0.2703 5.1181 10 1 2.3764 1.6826 4.9207 11 1 1.9295 -0.3576 6.1524 12 1 4.2074 0.2267 5.5605 13 6 2.0399 -0.7212 -1.2492 14 1 1.6760 -1.7487 -1.2508 15 6 1.5334 0.0021 -2.4992 16 6 2.0158 -0.7375 -3.7492 17 6 3.5518 -0.7343 -3.7782 18 7 4.0441 -1.3004 -2.5149 19 6 4.9167 -2.3276 -2.5167 20 8 5.3196 -2.7828 -1.4673 21 6 5.3918 -2.9105 -3.8228 22 7 6.3266 -4.0068 -3.5569 23 7 7.7178 -3.8988 -3.4252 24 6 8.1932 -5.0794 -3.1915 25 7 7.1557 -5.9793 -3.1729 26 6 7.2755 -7.4219 -2.9467 27 6 6.0083 -5.3086 -3.3993 28 8 4.8903 -5.7893 -3.4522 29 6 3.5719 -0.7215 -1.2499 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2491 -1.6316 1.1526 34 1 3.2480 -2.3960 4.2421 35 1 0.4438 0.0252 -2.4888 36 1 1.9182 1.0218 -2.5097 37 1 1.6520 -1.7647 -3.7272 38 1 1.6353 -0.2353 -4.6387 39 1 3.9158 0.2873 -3.8873 40 1 3.9041 -1.3410 -4.6124 41 1 5.8939 -2.1374 -4.4045 42 1 4.5374 -3.2898 -4.3834 43 1 9.2355 -5.3188 -3.0411 44 1 7.4174 -7.9288 -3.9011 45 1 8.1308 -7.6184 -2.3002 46 1 6.3675 -7.7916 -2.4702 47 1 3.9375 -1.3197 -0.4152 48 1 3.9396 0.3003 -1.1558 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732526629.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:21 Heat of formation + Delta-G solvation = 30.564076 kcal Electronic energy + Delta-G solvation = -30231.957166 eV Core-core repulsion = 26131.810063 eV Total energy + Delta-G solvation = -4100.147104 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.51093 -40.06623 -37.80552 -37.30003 -35.43148 -35.32718 -32.99132 -31.99895 -31.71719 -29.98442 -28.69826 -28.00155 -26.96278 -25.21699 -23.89204 -23.09438 -22.65010 -21.57893 -20.96476 -19.55436 -19.05090 -17.80016 -17.50679 -16.99596 -16.46296 -16.27040 -15.89455 -15.46511 -15.11269 -14.85633 -14.59511 -14.37880 -14.14186 -13.78155 -13.69811 -13.30189 -13.13377 -12.99559 -12.96890 -12.73694 -12.57788 -12.33009 -12.18253 -11.99245 -11.97883 -11.31699 -11.08684 -10.96824 -10.82695 -10.67334 -10.58103 -10.56041 -10.35745 -10.21585 -10.09627 -9.80112 -9.56626 -9.47806 -8.85063 -8.63350 -8.42745 -6.87024 -5.66653 -2.96161 1.53745 1.84003 2.59048 2.70498 2.92161 3.20697 3.48612 3.53349 3.56273 4.24191 4.41475 4.55566 4.64017 4.72220 4.74959 4.89351 4.92081 4.96171 5.03793 5.19646 5.26084 5.27657 5.37700 5.42761 5.64768 5.67369 5.73003 5.82017 5.83067 5.93646 5.96056 6.05400 6.16438 6.24015 6.26252 6.36200 6.47860 6.53153 6.56050 6.76458 6.78846 6.96904 7.15448 7.47763 7.51975 7.77992 7.94733 8.30115 8.50607 9.61671 10.20112 10.54256 11.55582 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010716 B = 0.003301 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.308776 B = 8480.598226 C =10263.137969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.047 0.953 4 N -0.725 5.725 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 C -0.103 4.103 14 H 0.070 0.930 15 C -0.114 4.114 16 C -0.135 4.135 17 C 0.105 3.895 18 N -0.609 5.609 19 C 0.493 3.507 20 O -0.514 6.514 21 C 0.146 3.854 22 N -0.437 5.437 23 N -0.274 5.274 24 C 0.255 3.745 25 N -0.562 5.562 26 C 0.100 3.900 27 C 0.653 3.347 28 O -0.551 6.551 29 C 0.124 3.876 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.384 0.616 34 H 0.254 0.746 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.231 0.769 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.106 0.894 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.542 -4.192 -22.569 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.366 5.366 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.124 4.124 14 H 0.088 0.912 15 C -0.152 4.152 16 C -0.173 4.173 17 C -0.019 4.019 18 N -0.344 5.344 19 C 0.278 3.722 20 O -0.388 6.388 21 C 0.020 3.980 22 N -0.258 5.258 23 N -0.095 5.095 24 C -0.044 4.044 25 N -0.291 5.291 26 C -0.042 4.042 27 C 0.352 3.648 28 O -0.423 6.423 29 C 0.003 3.997 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.247 0.753 44 H 0.091 0.909 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.124 0.876 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.150 -3.644 -22.022 23.763 hybrid contribution -0.005 -0.565 1.145 1.277 sum 8.145 -4.209 -20.877 22.801 Atomic orbital electron populations 1.22480 0.99322 1.00805 0.99849 1.20167 0.91821 0.95212 0.85805 0.93535 1.42474 1.78045 1.10781 1.05314 1.19237 1.36565 0.93766 0.87328 0.91238 1.24742 1.02259 0.95916 0.97987 1.69686 1.50717 1.08636 1.28648 0.86170 0.77259 0.78752 0.84322 1.20624 1.21997 1.21963 1.21769 0.94676 1.00542 0.95363 0.91188 1.21621 1.01105 0.99009 0.93505 1.22005 0.94628 1.01773 0.98883 1.21871 0.95155 0.99293 0.85537 1.48177 1.44454 1.33671 1.08121 1.20798 0.79707 0.80305 0.91400 1.90803 1.55753 1.59381 1.32888 1.21273 0.92174 0.88370 0.96155 1.48198 1.03953 1.06460 1.67141 1.76957 0.90254 1.19999 1.22254 1.25892 0.96210 0.84377 0.97927 1.45846 1.07392 1.10111 1.65744 1.21820 1.04761 0.75079 1.02555 1.16640 0.84702 0.82245 0.81206 1.91090 1.19664 1.72539 1.59048 1.21700 0.93848 0.98872 0.85272 0.92898 0.94281 0.93624 0.78192 0.93619 0.91158 0.91823 0.91411 0.90876 0.90931 0.90482 0.86004 0.86048 0.75276 0.90940 0.89279 0.89332 0.87619 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.14 37.15 0.34 -2.66 16 2 C 0.18 3.59 2.47 -67.94 -0.17 3.42 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 N -0.72 -18.61 4.52 -53.43 -0.24 -18.86 16 5 C -0.24 -6.74 9.93 -15.06 -0.15 -6.89 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -29.41 13.06 55.49 0.72 -28.68 16 9 Si 0.90 23.13 29.55 -169.99 -5.02 18.11 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 12 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 13 C -0.10 -1.73 1.97 -90.50 -0.18 -1.91 16 14 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 15 C -0.11 -1.41 4.85 -26.69 -0.13 -1.54 16 16 C -0.13 -1.33 6.10 -26.39 -0.16 -1.49 16 17 C 0.10 1.02 6.37 -3.48 -0.02 1.00 16 18 N -0.61 -8.98 2.97 -172.50 -0.51 -9.49 16 19 C 0.49 8.26 7.77 -10.98 -0.09 8.17 16 20 O -0.51 -11.53 15.84 5.56 0.09 -11.44 16 21 C 0.15 1.81 5.21 -5.19 -0.03 1.78 16 22 N -0.44 -6.33 3.11 -66.31 -0.21 -6.53 16 23 N -0.27 -3.44 12.53 29.87 0.37 -3.07 16 24 C 0.26 2.28 12.66 -89.12 -1.13 1.15 16 25 N -0.56 -6.16 3.14 -130.10 -0.41 -6.57 16 26 C 0.10 0.67 11.05 59.85 0.66 1.33 16 27 C 0.65 10.17 8.60 -86.73 -0.75 9.43 16 28 O -0.55 -10.39 17.71 5.09 0.09 -10.30 16 29 C 0.12 2.23 5.47 -3.71 -0.02 2.21 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.04 0.58 6.41 -51.93 -0.33 0.24 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.38 10.84 7.61 -40.82 -0.31 10.53 16 34 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 35 H 0.07 0.84 6.36 -51.93 -0.33 0.51 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.53 5.93 -51.93 -0.31 0.22 16 41 H 0.12 1.07 7.93 -51.93 -0.41 0.66 16 42 H 0.12 1.28 7.67 -51.93 -0.40 0.89 16 43 H 0.23 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 47 H 0.11 2.44 6.51 -51.93 -0.34 2.10 16 48 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 391.05 15.07 5.89 5.89 Total: -1.00 -41.02 391.05 -8.60 -49.62 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -7.47 Total: 7.80 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: -1.91 Total: 13.52 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -0.27 Total: -73.20 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: 0.18 Total: -21.74 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -41.02 -8.60 -49.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732526629.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.183 kcal (2) G-P(sol) polarization free energy of solvation -41.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds