Wall clock time and date at job start Tue Mar 31 2020 19:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46862 * 2 1 4 4 N 1.46507 * 109.46872 * 240.00023 * 2 1 3 5 5 C 1.36938 * 119.99798 * 85.00367 * 4 2 1 6 6 H 1.08000 * 120.00207 * 359.97438 * 5 4 2 7 7 C 1.38807 * 119.99534 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00297 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00084 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46720 * 90.00007 * 9 7 5 11 11 H 1.48499 * 109.47526 * 210.00139 * 9 7 5 12 12 H 1.48503 * 109.46823 * 330.00833 * 9 7 5 13 13 C 1.52993 * 109.46840 * 119.99983 * 2 1 3 14 14 H 1.08999 * 109.49935 * 60.07055 * 13 2 1 15 15 C 1.53042 * 109.49861 * 299.99758 * 13 2 1 16 16 C 1.53049 * 109.53524 * 178.68678 * 15 13 2 17 17 C 1.53183 * 109.31192 * 61.36890 * 16 15 13 18 18 N 1.46930 * 108.77725 * 305.35889 * 17 16 15 19 19 C 1.34770 * 120.63276 * 233.59007 * 18 17 16 20 20 O 1.21281 * 119.99933 * 180.02562 * 19 18 17 21 21 C 1.50702 * 120.00346 * 359.97438 * 19 18 17 22 22 N 1.46495 * 109.47335 * 179.97438 * 21 19 18 23 23 N 1.40170 * 126.35384 * 270.24842 * 22 21 19 24 24 C 1.29394 * 108.14285 * 180.15024 * 23 22 21 25 25 N 1.37359 * 108.82993 * 359.64426 * 24 23 22 26 26 C 1.46503 * 125.83425 * 180.23206 * 25 24 23 27 27 C 1.34821 * 108.33437 * 0.22862 * 25 24 23 28 28 O 1.21813 * 126.30222 * 179.97438 * 27 25 24 29 29 C 1.46931 * 118.73581 * 53.86351 * 18 17 16 30 30 H 1.09004 * 109.47343 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47212 * 300.00171 * 1 2 3 32 32 H 1.09001 * 109.47085 * 60.00163 * 1 2 3 33 33 H 0.96998 * 119.99946 * 264.99767 * 4 2 1 34 34 H 0.97001 * 119.99881 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.45819 * 58.67040 * 15 13 2 36 36 H 1.09001 * 109.44922 * 298.69819 * 15 13 2 37 37 H 1.08997 * 109.49756 * 301.41162 * 16 15 13 38 38 H 1.09001 * 109.51568 * 181.33666 * 16 15 13 39 39 H 1.09005 * 109.58748 * 185.57657 * 17 16 15 40 40 H 1.08997 * 109.71145 * 65.22138 * 17 16 15 41 41 H 1.09003 * 109.46520 * 60.00231 * 21 19 18 42 42 H 1.09002 * 109.46927 * 300.00709 * 21 19 18 43 43 H 1.08002 * 125.58866 * 179.91590 * 24 23 22 44 44 H 1.08997 * 109.47116 * 359.97231 * 26 25 24 45 45 H 1.08995 * 109.47075 * 119.97547 * 26 25 24 46 46 H 1.08997 * 109.47017 * 239.97352 * 26 25 24 47 47 H 1.09003 * 109.58212 * 65.92423 * 29 18 17 48 48 H 1.08995 * 109.58361 * 186.35135 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8920 1.0404 -2.4244 7 6 2.6123 -0.6617 -3.5090 8 7 2.9262 -1.9385 -3.4497 9 14 2.7901 0.2699 -5.1183 10 1 4.1520 0.8559 -5.2031 11 1 2.5803 -0.6617 -6.2555 12 1 1.7794 1.3565 -5.1755 13 6 2.0399 -0.7212 1.2492 14 1 1.6779 -1.7493 1.2490 15 6 1.5302 -0.0002 2.4992 16 6 2.0126 -0.7399 3.7492 17 6 3.5441 -0.7368 3.7802 18 7 4.0438 -1.2971 2.5171 19 6 4.9187 -2.3222 2.5191 20 8 5.3241 -2.7754 1.4697 21 6 5.3942 -2.9045 3.8252 22 7 6.3316 -3.9986 3.5596 23 7 6.0038 -5.3509 3.3902 24 6 7.0984 -6.0072 3.1772 25 7 8.1529 -5.1271 3.1915 26 6 9.5615 -5.4728 2.9849 27 6 7.6702 -3.8906 3.4280 28 8 8.3225 -2.8650 3.5086 29 6 3.5762 -0.7144 1.2519 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 -1.1527 34 1 3.2495 -2.3958 -4.2417 35 1 0.4405 0.0204 2.4874 36 1 1.9127 1.0204 2.5109 37 1 1.6512 -1.7679 3.7258 38 1 1.6297 -0.2398 4.6388 39 1 3.8940 -1.3459 4.6137 40 1 3.9075 0.2842 3.8961 41 1 4.5404 -3.2860 4.3851 42 1 5.8941 -2.1305 4.4075 43 1 7.1707 -7.0718 3.0108 44 1 9.6513 -6.5460 2.8164 45 1 9.9440 -4.9355 2.1172 46 1 10.1372 -5.1943 3.8676 47 1 3.9399 0.3094 1.1647 48 1 3.9472 -1.3086 0.4169 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732526631.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:23 Heat of formation + Delta-G solvation = 30.637423 kcal Electronic energy + Delta-G solvation = -30166.926102 eV Core-core repulsion = 26066.782179 eV Total energy + Delta-G solvation = -4100.143923 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.51653 -40.06815 -37.80742 -37.31054 -35.44076 -35.33633 -32.99419 -32.00604 -31.73415 -29.98514 -28.70526 -28.00681 -26.96992 -25.21947 -23.89902 -23.09226 -22.67331 -21.55937 -20.99392 -19.56033 -19.05494 -17.80087 -17.50690 -17.00027 -16.47782 -16.24152 -15.94722 -15.46676 -15.13369 -14.84461 -14.54095 -14.40543 -14.17315 -13.76472 -13.70912 -13.29603 -13.14908 -13.05356 -12.97111 -12.74215 -12.59284 -12.33523 -12.17646 -12.01519 -11.98542 -11.32706 -11.08965 -10.97410 -10.80996 -10.68121 -10.58785 -10.56427 -10.35415 -10.23237 -10.11656 -9.81627 -9.56767 -9.48096 -8.84747 -8.64167 -8.42727 -6.87377 -5.66981 -2.96308 1.53423 1.84585 2.57765 2.70627 2.91269 3.20599 3.49051 3.53548 3.55536 4.20772 4.41166 4.55228 4.63835 4.70257 4.73358 4.89442 4.91975 4.97317 5.02939 5.19023 5.23685 5.26869 5.38262 5.41773 5.64516 5.65658 5.71967 5.81416 5.81898 5.92496 5.95271 6.04641 6.15137 6.22973 6.25721 6.35755 6.47125 6.52106 6.55369 6.75541 6.78076 6.96110 7.14564 7.47596 7.51880 7.77410 7.93183 8.30043 8.50451 9.61547 10.19705 10.53928 11.55213 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.003264 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.845177 B = 8577.563633 C =10495.162467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.046 0.954 4 N -0.724 5.724 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.102 4.102 14 H 0.070 0.930 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.104 3.896 18 N -0.609 5.609 19 C 0.493 3.507 20 O -0.514 6.514 21 C 0.145 3.855 22 N -0.437 5.437 23 N -0.272 5.272 24 C 0.254 3.746 25 N -0.562 5.562 26 C 0.102 3.898 27 C 0.652 3.348 28 O -0.553 6.553 29 C 0.124 3.876 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.384 0.616 34 H 0.254 0.746 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.232 0.768 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.931 -6.496 22.582 24.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.069 3.931 3 H 0.064 0.936 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.122 4.122 14 H 0.088 0.912 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.019 4.019 18 N -0.344 5.344 19 C 0.278 3.722 20 O -0.388 6.388 21 C 0.020 3.980 22 N -0.257 5.257 23 N -0.092 5.092 24 C -0.045 4.045 25 N -0.291 5.291 26 C -0.040 4.040 27 C 0.352 3.648 28 O -0.426 6.426 29 C 0.003 3.997 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.248 0.752 44 H 0.112 0.888 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.610 -5.892 22.021 23.476 hybrid contribution 0.807 0.147 -1.136 1.401 sum 6.417 -5.746 20.885 22.592 Atomic orbital electron populations 1.22480 0.99321 1.00776 0.99855 1.20176 0.91819 0.95249 0.85831 0.93555 1.42455 1.78074 1.10744 1.05293 1.19189 1.36658 0.93761 0.87357 0.91306 1.24733 1.02215 0.95920 0.97983 1.69673 1.50650 1.08623 1.28771 0.86244 0.77735 0.78578 0.83944 1.21801 1.21874 1.20853 1.21837 0.94579 1.00491 0.95317 0.91163 1.21630 1.01079 0.99077 0.93515 1.21920 0.94629 1.01714 0.98916 1.21779 0.95084 0.99474 0.85548 1.48177 1.44342 1.33766 1.08129 1.20797 0.79702 0.80312 0.91403 1.90804 1.55678 1.59454 1.32899 1.21277 0.93364 0.87199 0.96155 1.48217 1.05538 1.05006 1.66920 1.76983 1.21630 0.88646 1.21971 1.25935 0.81918 0.98510 0.98113 1.45856 1.09457 1.08066 1.65738 1.21793 0.76634 1.02227 1.03316 1.16631 0.82918 0.84003 0.81246 1.91079 1.62883 1.29588 1.59036 1.21803 0.93831 0.98825 0.85272 0.93631 0.94290 0.92905 0.78200 0.93579 0.91146 0.91828 0.91455 0.90857 0.90489 0.90998 0.85949 0.86063 0.75239 0.88842 0.90407 0.90556 0.91690 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.14 37.16 0.34 -2.61 16 2 C 0.18 3.54 2.47 -67.93 -0.17 3.37 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 N -0.72 -18.45 4.53 -53.42 -0.24 -18.70 16 5 C -0.24 -6.74 9.93 -15.06 -0.15 -6.89 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -29.24 13.06 55.49 0.72 -28.52 16 9 Si 0.90 23.13 29.55 -169.99 -5.02 18.11 16 10 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 13 C -0.10 -1.68 1.99 -90.28 -0.18 -1.86 16 14 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 15 C -0.12 -1.39 4.85 -26.68 -0.13 -1.52 16 16 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 17 C 0.10 1.02 6.34 -3.71 -0.02 0.99 16 18 N -0.61 -8.99 2.97 -172.50 -0.51 -9.50 16 19 C 0.49 8.27 7.77 -10.99 -0.09 8.18 16 20 O -0.51 -11.54 15.84 5.56 0.09 -11.46 16 21 C 0.15 1.81 5.21 -5.20 -0.03 1.78 16 22 N -0.44 -6.32 3.11 -66.31 -0.21 -6.52 16 23 N -0.27 -3.48 12.53 29.87 0.37 -3.10 16 24 C 0.25 2.29 12.61 -89.12 -1.12 1.17 16 25 N -0.56 -6.09 3.14 -130.11 -0.41 -6.50 16 26 C 0.10 0.66 11.08 59.85 0.66 1.32 16 27 C 0.65 10.04 8.61 -86.73 -0.75 9.30 16 28 O -0.55 -10.22 17.76 5.09 0.09 -10.13 16 29 C 0.12 2.23 5.50 -3.48 -0.02 2.21 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.57 6.40 -51.93 -0.33 0.23 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.38 10.70 7.64 -40.82 -0.31 10.39 16 34 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 35 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.53 5.93 -51.93 -0.31 0.22 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.12 1.11 7.69 -51.93 -0.40 0.71 16 42 H 0.12 1.25 7.91 -51.93 -0.41 0.84 16 43 H 0.23 0.71 8.06 -52.49 -0.42 0.28 16 44 H 0.09 0.23 8.07 -51.93 -0.42 -0.19 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.11 2.44 6.54 -51.93 -0.34 2.10 16 LS Contribution 391.13 15.07 5.89 5.89 Total: -1.00 -40.91 391.13 -8.59 -49.51 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -7.47 Total: 7.35 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: -1.91 Total: 13.57 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -0.27 Total: -72.85 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: 0.18 Total: -21.58 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -40.91 -8.59 -49.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732526631.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.146 kcal (2) G-P(sol) polarization free energy of solvation -40.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds