Wall clock time and date at job start Tue Mar 31 2020 19:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46862 * 2 1 4 4 N 1.46507 * 109.46872 * 240.00023 * 2 1 3 5 5 C 1.36938 * 119.99798 * 85.00367 * 4 2 1 6 6 H 1.08000 * 120.00207 * 359.97438 * 5 4 2 7 7 C 1.38807 * 119.99534 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00297 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00084 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46720 * 90.00007 * 9 7 5 11 11 H 1.48499 * 109.47526 * 210.00139 * 9 7 5 12 12 H 1.48503 * 109.46823 * 330.00833 * 9 7 5 13 13 C 1.52993 * 109.46840 * 119.99983 * 2 1 3 14 14 H 1.08999 * 109.49935 * 60.07055 * 13 2 1 15 15 C 1.53042 * 109.49861 * 299.99758 * 13 2 1 16 16 C 1.53049 * 109.53524 * 178.68678 * 15 13 2 17 17 C 1.53183 * 109.31192 * 61.36890 * 16 15 13 18 18 N 1.46930 * 108.77725 * 305.35889 * 17 16 15 19 19 C 1.34770 * 120.63276 * 233.59007 * 18 17 16 20 20 O 1.21281 * 119.99933 * 180.02562 * 19 18 17 21 21 C 1.50702 * 120.00346 * 359.97438 * 19 18 17 22 22 N 1.46495 * 109.47335 * 179.97438 * 21 19 18 23 23 N 1.40170 * 126.35384 * 270.24842 * 22 21 19 24 24 C 1.29394 * 108.14285 * 180.15024 * 23 22 21 25 25 N 1.37359 * 108.82993 * 359.64426 * 24 23 22 26 26 C 1.46503 * 125.83425 * 180.23206 * 25 24 23 27 27 C 1.34821 * 108.33437 * 0.22862 * 25 24 23 28 28 O 1.21813 * 126.30222 * 179.97438 * 27 25 24 29 29 C 1.46931 * 118.73581 * 53.86351 * 18 17 16 30 30 H 1.09004 * 109.47343 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47212 * 300.00171 * 1 2 3 32 32 H 1.09001 * 109.47085 * 60.00163 * 1 2 3 33 33 H 0.96998 * 119.99946 * 264.99767 * 4 2 1 34 34 H 0.97001 * 119.99881 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.45819 * 58.67040 * 15 13 2 36 36 H 1.09001 * 109.44922 * 298.69819 * 15 13 2 37 37 H 1.08997 * 109.49756 * 301.41162 * 16 15 13 38 38 H 1.09001 * 109.51568 * 181.33666 * 16 15 13 39 39 H 1.09005 * 109.58748 * 185.57657 * 17 16 15 40 40 H 1.08997 * 109.71145 * 65.22138 * 17 16 15 41 41 H 1.09003 * 109.46520 * 60.00231 * 21 19 18 42 42 H 1.09002 * 109.46927 * 300.00709 * 21 19 18 43 43 H 1.08002 * 125.58866 * 179.91590 * 24 23 22 44 44 H 1.08997 * 109.47116 * 359.97231 * 26 25 24 45 45 H 1.08995 * 109.47075 * 119.97547 * 26 25 24 46 46 H 1.08997 * 109.47017 * 239.97352 * 26 25 24 47 47 H 1.09003 * 109.58212 * 65.92423 * 29 18 17 48 48 H 1.08995 * 109.58361 * 186.35135 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8920 1.0404 -2.4244 7 6 2.6123 -0.6617 -3.5090 8 7 2.9262 -1.9385 -3.4497 9 14 2.7901 0.2699 -5.1183 10 1 4.1520 0.8559 -5.2031 11 1 2.5803 -0.6617 -6.2555 12 1 1.7794 1.3565 -5.1755 13 6 2.0399 -0.7212 1.2492 14 1 1.6779 -1.7493 1.2490 15 6 1.5302 -0.0002 2.4992 16 6 2.0126 -0.7399 3.7492 17 6 3.5441 -0.7368 3.7802 18 7 4.0438 -1.2971 2.5171 19 6 4.9187 -2.3222 2.5191 20 8 5.3241 -2.7754 1.4697 21 6 5.3942 -2.9045 3.8252 22 7 6.3316 -3.9986 3.5596 23 7 6.0038 -5.3509 3.3902 24 6 7.0984 -6.0072 3.1772 25 7 8.1529 -5.1271 3.1915 26 6 9.5615 -5.4728 2.9849 27 6 7.6702 -3.8906 3.4280 28 8 8.3225 -2.8650 3.5086 29 6 3.5762 -0.7144 1.2519 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 -1.1527 34 1 3.2495 -2.3958 -4.2417 35 1 0.4405 0.0204 2.4874 36 1 1.9127 1.0204 2.5109 37 1 1.6512 -1.7679 3.7258 38 1 1.6297 -0.2398 4.6388 39 1 3.8940 -1.3459 4.6137 40 1 3.9075 0.2842 3.8961 41 1 4.5404 -3.2860 4.3851 42 1 5.8941 -2.1305 4.4075 43 1 7.1707 -7.0718 3.0108 44 1 9.6513 -6.5460 2.8164 45 1 9.9440 -4.9355 2.1172 46 1 10.1372 -5.1943 3.8676 47 1 3.9399 0.3094 1.1647 48 1 3.9472 -1.3086 0.4169 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732526631.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:22 Heat of formation + Delta-G solvation = 0.940156 kcal Electronic energy + Delta-G solvation = -30168.213872 eV Core-core repulsion = 26066.782179 eV Total energy + Delta-G solvation = -4101.431693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.44312 -41.30742 -39.16761 -38.45038 -36.99689 -36.26514 -34.70862 -33.20957 -32.91794 -31.48085 -30.17822 -29.18709 -27.79094 -26.52920 -25.60856 -24.41346 -23.63041 -22.58496 -22.18654 -21.08337 -20.19327 -19.18619 -18.78611 -18.45337 -17.53677 -17.16864 -17.05166 -16.79964 -16.51077 -16.30702 -15.65777 -15.60318 -15.45667 -15.27649 -15.00024 -14.47195 -14.32786 -14.20387 -14.01617 -13.90247 -13.59050 -13.51397 -13.40664 -13.30332 -13.04173 -12.95785 -12.79575 -12.55873 -12.38182 -12.15389 -12.01249 -11.84417 -11.67904 -11.59066 -11.43975 -11.35334 -11.18671 -10.97614 -10.70654 -9.69359 -9.66610 -9.00639 -7.93826 -5.22426 0.63495 1.06382 1.41950 1.45004 1.45652 1.52068 1.52914 1.95138 2.26546 2.54392 3.36412 3.39581 3.41708 3.73291 3.84777 3.93739 4.01354 4.06315 4.07346 4.13748 4.18395 4.30393 4.38363 4.42830 4.45784 4.60255 4.63300 4.75582 4.77282 4.84842 4.87346 4.92132 4.93098 4.97774 5.03777 5.07279 5.19268 5.28282 5.38705 5.48480 5.50452 5.55786 5.63959 5.65919 6.27235 6.33597 6.57399 6.87912 7.06132 7.32095 8.10662 8.32067 9.29903 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.003264 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.845177 B = 8577.563633 C =10495.162467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.171 3.829 3 H 0.046 0.954 4 N -0.738 5.738 5 C -0.232 4.232 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.973 5.973 9 Si 0.971 3.029 10 H -0.292 1.292 11 H -0.297 1.297 12 H -0.264 1.264 13 C -0.087 4.087 14 H 0.050 0.950 15 C -0.110 4.110 16 C -0.126 4.126 17 C 0.093 3.907 18 N -0.604 5.604 19 C 0.482 3.518 20 O -0.587 6.587 21 C 0.149 3.851 22 N -0.447 5.447 23 N -0.312 5.312 24 C 0.277 3.723 25 N -0.560 5.560 26 C 0.094 3.906 27 C 0.630 3.370 28 O -0.599 6.599 29 C 0.131 3.869 30 H 0.036 0.964 31 H 0.083 0.917 32 H 0.033 0.967 33 H 0.366 0.634 34 H 0.247 0.753 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.161 0.839 42 H 0.144 0.856 43 H 0.290 0.710 44 H 0.143 0.857 45 H 0.061 0.939 46 H 0.082 0.918 47 H 0.062 0.938 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.991 -6.288 25.699 26.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.062 3.938 3 H 0.064 0.936 4 N -0.378 5.378 5 C -0.364 4.364 6 H 0.096 0.904 7 C -0.274 4.274 8 N -0.624 5.624 9 Si 0.800 3.200 10 H -0.219 1.219 11 H -0.224 1.224 12 H -0.189 1.189 13 C -0.107 4.107 14 H 0.069 0.931 15 C -0.148 4.148 16 C -0.164 4.164 17 C -0.027 4.027 18 N -0.337 5.337 19 C 0.270 3.730 20 O -0.467 6.467 21 C 0.024 3.976 22 N -0.265 5.265 23 N -0.133 5.133 24 C -0.021 4.021 25 N -0.287 5.287 26 C -0.046 4.046 27 C 0.329 3.671 28 O -0.477 6.477 29 C 0.008 3.992 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.198 0.802 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.107 0.893 41 H 0.179 0.821 42 H 0.161 0.839 43 H 0.305 0.695 44 H 0.161 0.839 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.080 0.920 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.617 -5.649 25.221 26.255 hybrid contribution 1.118 0.072 -2.040 2.328 sum 5.735 -5.577 23.181 24.522 Atomic orbital electron populations 1.22308 0.97200 1.00607 1.01077 1.20507 0.93152 0.94927 0.85186 0.93629 1.42703 1.78408 1.10096 1.06582 1.19625 1.34414 0.94111 0.88295 0.90440 1.25584 1.03288 0.96828 1.01671 1.69866 1.52894 1.10494 1.29195 0.85170 0.77777 0.77523 0.79519 1.21919 1.22365 1.18887 1.21668 0.93114 0.99648 0.96283 0.93101 1.21638 1.01827 0.99284 0.92045 1.21924 0.93904 1.01666 0.98919 1.22274 0.95668 1.00947 0.83841 1.48286 1.43521 1.33022 1.08828 1.21736 0.79023 0.80025 0.92222 1.90765 1.58341 1.61860 1.35741 1.21499 0.94714 0.87710 0.93628 1.48439 1.05445 1.06078 1.66564 1.76980 1.23485 0.87969 1.24900 1.27162 0.80252 1.00198 0.94456 1.46147 1.11334 1.06906 1.64347 1.22164 0.74411 1.05122 1.02943 1.17089 0.83428 0.84929 0.81646 1.91014 1.63942 1.31466 1.61245 1.21411 0.95009 0.97361 0.85420 0.94480 0.89869 0.94784 0.80243 0.94400 0.89761 0.90703 0.91775 0.86677 0.86715 0.89316 0.82135 0.83861 0.69463 0.83854 0.92031 0.89943 0.91977 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 9.14 71.98 0.66 -4.64 16 2 C 0.17 6.79 2.47 44.99 0.11 6.90 16 3 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 4 N -0.74 -39.42 4.53 -322.94 -1.46 -40.88 16 5 C -0.23 -13.55 9.93 84.03 0.83 -12.71 16 6 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 7 C -0.08 -5.01 5.50 84.86 0.47 -4.55 16 8 N -0.97 -64.45 13.06 21.65 0.28 -64.17 16 9 Si 0.97 49.00 29.55 68.60 2.03 51.02 16 10 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 11 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 12 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 13 C -0.09 -2.87 1.99 -10.57 -0.02 -2.89 16 14 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 15 C -0.11 -2.31 4.85 30.62 0.15 -2.16 16 16 C -0.13 -1.84 6.08 30.67 0.19 -1.66 16 17 C 0.09 1.51 6.34 86.36 0.55 2.06 16 18 N -0.60 -17.85 2.97 -818.06 -2.43 -20.27 16 19 C 0.48 16.76 7.77 87.66 0.68 17.44 16 20 O -0.59 -28.53 15.84 -3.03 -0.05 -28.58 16 21 C 0.15 3.58 5.21 85.63 0.45 4.03 16 22 N -0.45 -12.91 3.11 -481.78 -1.50 -14.41 16 23 N -0.31 -7.72 12.53 -59.42 -0.74 -8.47 16 24 C 0.28 4.40 12.61 179.83 2.27 6.67 16 25 N -0.56 -11.63 3.14 -683.69 -2.15 -13.77 16 26 C 0.09 1.07 11.08 127.77 1.42 2.49 16 27 C 0.63 19.78 8.61 178.99 1.54 21.32 16 28 O -0.60 -23.14 17.76 -4.71 -0.08 -23.22 16 29 C 0.13 4.95 5.50 86.51 0.48 5.43 16 30 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.08 2.15 6.40 -2.39 -0.02 2.14 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.37 21.90 7.64 -92.71 -0.71 21.19 16 34 H 0.25 15.95 8.31 -92.71 -0.77 15.18 16 35 H 0.08 1.58 6.36 -2.39 -0.02 1.56 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.11 1.04 5.93 -2.38 -0.01 1.03 16 40 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.16 2.49 7.69 -2.39 -0.02 2.48 16 42 H 0.14 2.73 7.91 -2.39 -0.02 2.72 16 43 H 0.29 0.49 8.06 -2.91 -0.02 0.47 16 44 H 0.14 0.16 8.07 -2.39 -0.02 0.14 16 45 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 48 H 0.04 2.20 6.54 -2.39 -0.02 2.19 16 Total: -1.00 -100.75 391.13 3.92 -96.83 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.27 Total: 28.18 kcal Atomic # 6 Polarization: 27.98 SS G_CDS: 9.76 Total: 37.74 kcal Atomic # 7 Polarization: -153.97 SS G_CDS: -8.00 Total: -161.97 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -0.13 Total: -51.80 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.03 Total: 51.02 kcal Total: -100.75 3.92 -96.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732526631.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.769 kcal (2) G-P(sol) polarization free energy of solvation -100.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds