Wall clock time and date at job start Tue Mar 31 2020 19:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46890 * 2 1 4 4 N 1.46498 * 109.46762 * 239.99864 * 2 1 3 5 5 C 1.36937 * 120.00074 * 85.00342 * 4 2 1 6 6 H 1.07994 * 120.00082 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99944 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00013 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47169 * 59.99389 * 9 7 5 11 11 H 1.48494 * 109.47382 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46943 * 299.99691 * 9 7 5 13 13 C 1.52994 * 109.46987 * 119.99754 * 2 1 3 14 14 H 1.09003 * 109.49983 * 179.97438 * 13 2 1 15 15 C 1.53042 * 109.50004 * 299.99809 * 13 2 1 16 16 C 1.53041 * 109.53960 * 181.34864 * 15 13 2 17 17 C 1.53188 * 109.31323 * 298.64003 * 16 15 13 18 18 N 1.46923 * 108.78248 * 54.63155 * 17 16 15 19 19 C 1.34777 * 120.63273 * 126.36632 * 18 17 16 20 20 O 1.21283 * 119.99750 * 180.02562 * 19 18 17 21 21 C 1.50702 * 119.99928 * 0.28271 * 19 18 17 22 22 N 1.46491 * 109.46957 * 179.72354 * 21 19 18 23 23 N 1.40173 * 126.34879 * 269.68693 * 22 21 19 24 24 C 1.29404 * 108.13888 * 179.81767 * 23 22 21 25 25 N 1.37352 * 108.83211 * 0.44516 * 24 23 22 26 26 C 1.46500 * 125.83541 * 179.67679 * 25 24 23 27 27 C 1.34821 * 108.33484 * 359.71293 * 25 24 23 28 28 O 1.21812 * 126.30423 * 179.97438 * 27 25 24 29 29 C 1.46929 * 118.73574 * 306.64745 * 18 17 16 30 30 H 1.09000 * 109.46807 * 300.00430 * 1 2 3 31 31 H 1.08994 * 109.47430 * 60.00069 * 1 2 3 32 32 H 1.08999 * 109.47093 * 180.02562 * 1 2 3 33 33 H 0.97001 * 119.99968 * 265.00198 * 4 2 1 34 34 H 0.96996 * 120.00450 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46026 * 61.33277 * 15 13 2 36 36 H 1.09004 * 109.44899 * 301.36408 * 15 13 2 37 37 H 1.08997 * 109.50165 * 178.68366 * 16 15 13 38 38 H 1.09003 * 109.52225 * 58.59891 * 16 15 13 39 39 H 1.09001 * 109.58188 * 294.84012 * 17 16 15 40 40 H 1.09008 * 109.70486 * 174.49517 * 17 16 15 41 41 H 1.09004 * 109.46965 * 299.72211 * 21 19 18 42 42 H 1.08994 * 109.46990 * 59.72065 * 21 19 18 43 43 H 1.08009 * 125.58359 * 180.13832 * 24 23 22 44 44 H 1.08998 * 109.47336 * 270.04247 * 26 25 24 45 45 H 1.08995 * 109.47021 * 30.04403 * 26 25 24 46 46 H 1.09000 * 109.47215 * 150.03883 * 26 25 24 47 47 H 1.09003 * 109.58730 * 173.14184 * 29 18 17 48 48 H 1.09003 * 109.58586 * 293.56783 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8920 1.0402 -2.4244 7 6 2.6112 -0.6621 -3.5093 8 7 2.9241 -1.9392 -3.4502 9 14 2.7890 0.2695 -5.1186 10 1 3.7443 1.3920 -4.9378 11 1 3.2980 -0.6489 -6.1686 12 1 1.4665 0.8063 -5.5284 13 6 2.0400 -0.7212 1.2492 14 1 3.1300 -0.7219 1.2495 15 6 1.5302 -0.0002 2.4992 16 6 2.0674 -0.7010 3.7492 17 6 1.5548 -2.1442 3.7806 18 7 1.9162 -2.8022 2.5177 19 6 2.5925 -3.9680 2.5197 20 8 2.8854 -4.5009 1.4703 21 6 2.9796 -4.6123 3.8259 22 7 3.6946 -5.8630 3.5604 23 7 3.1219 -7.1356 3.4286 24 6 4.0718 -7.9827 3.1953 25 7 5.2700 -7.3114 3.1770 26 6 6.5867 -7.9127 2.9513 27 6 5.0274 -6.0046 3.4031 28 8 5.8583 -5.1154 3.4562 29 6 1.5319 -2.1618 1.2523 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2489 -1.6318 -1.1526 34 1 3.2474 -2.3965 -4.2421 35 1 0.4405 -0.0209 2.5114 36 1 1.8737 1.0343 2.4870 37 1 1.7231 -0.1732 4.6386 38 1 3.1572 -0.7025 3.7260 39 1 0.4709 -2.1445 3.8957 40 1 2.0108 -2.6782 4.6144 41 1 3.6253 -3.9366 4.3869 42 1 2.0820 -4.8232 4.4070 43 1 3.9440 -9.0446 3.0449 44 1 7.0153 -8.2177 3.9059 45 1 6.4822 -8.7840 2.3050 46 1 7.2422 -7.1836 2.4750 47 1 1.9749 -2.7059 0.4181 48 1 0.4461 -2.1636 1.1569 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732526633.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:25 Heat of formation + Delta-G solvation = 2.805777 kcal Electronic energy + Delta-G solvation = -30277.078948 eV Core-core repulsion = 26175.728154 eV Total energy + Delta-G solvation = -4101.350794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.44258 -41.37844 -39.28567 -38.45911 -36.98542 -36.26382 -34.73815 -33.26631 -32.91290 -31.50453 -29.95373 -29.09625 -27.85476 -26.44534 -25.96898 -24.68479 -23.70332 -22.61875 -22.27661 -20.85384 -19.86043 -19.30425 -18.77757 -18.45487 -17.52720 -17.22480 -17.03861 -16.73530 -16.62991 -16.20241 -15.84545 -15.60787 -15.50711 -15.21365 -15.17336 -14.52850 -14.44007 -14.11754 -14.06082 -13.91729 -13.61159 -13.51580 -13.39582 -13.28295 -13.00062 -12.94471 -12.81962 -12.66387 -12.36412 -12.16206 -11.92615 -11.80680 -11.77444 -11.59054 -11.46739 -11.36814 -11.18759 -10.95036 -10.71358 -9.67879 -9.65882 -9.04139 -7.94990 -5.25114 0.62866 1.06356 1.41539 1.44650 1.46316 1.52184 1.52366 1.94972 2.26744 2.53758 3.35304 3.37598 3.42297 3.73520 3.86154 3.89780 4.01225 4.04615 4.06641 4.08002 4.16219 4.30025 4.37479 4.38670 4.50202 4.58087 4.61747 4.70509 4.75901 4.81658 4.84221 4.88622 4.90738 4.96478 5.09637 5.10800 5.15361 5.22922 5.37587 5.44007 5.48336 5.53276 5.65457 5.68288 6.25656 6.32380 6.57236 6.88025 7.05397 7.30124 8.09094 8.30301 9.28513 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010999 B = 0.003241 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.070201 B = 8636.671946 C =10469.918171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.171 3.829 3 H 0.046 0.954 4 N -0.743 5.743 5 C -0.239 4.239 6 H 0.079 0.921 7 C -0.083 4.083 8 N -0.976 5.976 9 Si 0.976 3.024 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.273 1.273 13 C -0.093 4.093 14 H 0.036 0.964 15 C -0.108 4.108 16 C -0.131 4.131 17 C 0.095 3.905 18 N -0.603 5.603 19 C 0.482 3.518 20 O -0.587 6.587 21 C 0.149 3.851 22 N -0.447 5.447 23 N -0.309 5.309 24 C 0.278 3.722 25 N -0.560 5.560 26 C 0.092 3.908 27 C 0.629 3.371 28 O -0.601 6.601 29 C 0.127 3.873 30 H 0.085 0.915 31 H 0.033 0.967 32 H 0.042 0.958 33 H 0.368 0.632 34 H 0.248 0.752 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.051 0.949 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.139 0.861 42 H 0.166 0.834 43 H 0.291 0.709 44 H 0.096 0.904 45 H 0.129 0.871 46 H 0.062 0.938 47 H 0.039 0.961 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.080 -10.451 25.564 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.063 3.937 3 H 0.064 0.936 4 N -0.384 5.384 5 C -0.370 4.370 6 H 0.097 0.903 7 C -0.275 4.275 8 N -0.627 5.627 9 Si 0.805 3.195 10 H -0.203 1.203 11 H -0.225 1.225 12 H -0.199 1.199 13 C -0.113 4.113 14 H 0.055 0.945 15 C -0.146 4.146 16 C -0.169 4.169 17 C -0.026 4.026 18 N -0.336 5.336 19 C 0.270 3.730 20 O -0.466 6.466 21 C 0.024 3.976 22 N -0.265 5.265 23 N -0.130 5.130 24 C -0.020 4.020 25 N -0.288 5.288 26 C -0.048 4.048 27 C 0.328 3.672 28 O -0.479 6.479 29 C 0.004 3.996 30 H 0.103 0.897 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.200 0.800 34 H 0.057 0.943 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.135 0.865 38 H 0.070 0.930 39 H 0.119 0.881 40 H 0.131 0.869 41 H 0.157 0.843 42 H 0.183 0.817 43 H 0.306 0.694 44 H 0.115 0.885 45 H 0.147 0.853 46 H 0.081 0.919 47 H 0.058 0.942 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.364 -9.775 25.093 27.033 hybrid contribution 1.381 0.007 -2.003 2.433 sum -0.983 -9.769 23.090 25.090 Atomic orbital electron populations 1.22380 0.96991 1.00874 1.01235 1.20492 0.93462 0.94772 0.85015 0.93629 1.42824 1.78587 1.10303 1.06686 1.19649 1.34801 0.94238 0.88358 0.90304 1.25658 1.03112 0.96837 1.01882 1.69884 1.52799 1.10599 1.29388 0.85169 0.78131 0.77164 0.79066 1.20311 1.22476 1.19936 1.21537 0.98778 0.94345 0.96611 0.94534 1.21621 1.01987 0.99187 0.91787 1.21947 1.00677 0.95106 0.99140 1.22282 1.02710 0.93804 0.83758 1.48275 1.55273 1.21269 1.08797 1.21733 0.77511 0.81533 0.92230 1.90763 1.55859 1.64320 1.35696 1.21494 1.00801 0.81573 0.93685 1.48421 1.04859 1.06547 1.66719 1.76962 1.22791 0.88200 1.25089 1.27139 0.78660 1.01877 0.94324 1.46130 1.11118 1.07128 1.64386 1.22169 0.78496 0.99569 1.04606 1.17119 0.84014 0.84441 0.81660 1.91027 1.50601 1.44831 1.61392 1.21370 0.99752 0.92971 0.85493 0.89655 0.94790 0.93889 0.79991 0.94314 0.89302 0.90774 0.86475 0.93004 0.88068 0.86879 0.84327 0.81693 0.69407 0.88538 0.85300 0.91868 0.94242 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.39 8.80 71.98 0.63 -4.75 16 2 C 0.17 6.99 2.72 44.99 0.12 7.11 16 3 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 4 N -0.74 -40.72 5.04 -322.95 -1.63 -42.35 16 5 C -0.24 -14.12 9.93 84.03 0.83 -13.29 16 6 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 7 C -0.08 -5.14 5.50 84.86 0.47 -4.67 16 8 N -0.98 -65.48 13.06 21.65 0.28 -65.20 16 9 Si 0.98 49.11 29.55 68.60 2.03 51.14 16 10 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 11 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 12 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 13 C -0.09 -3.20 2.31 -10.86 -0.03 -3.22 16 14 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 15 C -0.11 -2.37 4.78 30.62 0.15 -2.22 16 16 C -0.13 -2.11 6.08 30.67 0.19 -1.92 16 17 C 0.10 1.49 6.34 86.36 0.55 2.03 16 18 N -0.60 -17.42 2.98 -819.71 -2.44 -19.86 16 19 C 0.48 16.52 7.77 87.66 0.68 17.20 16 20 O -0.59 -28.09 15.84 -3.04 -0.05 -28.14 16 21 C 0.15 3.54 5.21 85.64 0.45 3.99 16 22 N -0.45 -12.82 3.11 -481.79 -1.50 -14.32 16 23 N -0.31 -7.32 12.53 -59.41 -0.74 -8.07 16 24 C 0.28 4.27 12.66 179.83 2.28 6.54 16 25 N -0.56 -11.78 3.14 -683.68 -2.15 -13.93 16 26 C 0.09 1.11 11.05 127.77 1.41 2.52 16 27 C 0.63 20.12 8.60 178.99 1.54 21.66 16 28 O -0.60 -24.10 17.71 -4.71 -0.08 -24.18 16 29 C 0.13 4.64 5.21 86.22 0.45 5.08 16 30 H 0.08 2.17 6.46 -2.39 -0.02 2.16 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.53 6.32 -2.39 -0.02 1.51 16 33 H 0.37 22.49 6.17 -92.71 -0.57 21.92 16 34 H 0.25 16.20 8.31 -92.71 -0.77 15.43 16 35 H 0.09 1.63 6.50 -2.39 -0.02 1.61 16 36 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.11 1.02 5.94 -2.38 -0.01 1.00 16 41 H 0.14 2.75 7.66 -2.38 -0.02 2.74 16 42 H 0.17 2.36 7.94 -2.39 -0.02 2.34 16 43 H 0.29 0.31 8.06 -2.91 -0.02 0.28 16 44 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.06 1.11 8.08 -2.39 -0.02 1.09 16 47 H 0.04 1.93 5.59 -2.39 -0.01 1.92 16 48 H 0.08 2.75 6.16 -2.39 -0.01 2.74 16 Total: -1.00 -102.58 385.47 3.85 -98.74 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: 0.41 Total: 30.11 kcal Atomic # 6 Polarization: 26.34 SS G_CDS: 9.72 Total: 36.06 kcal Atomic # 7 Polarization: -155.55 SS G_CDS: -8.18 Total: -163.73 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.13 Total: -52.32 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 2.03 Total: 51.14 kcal Total: -102.58 3.85 -98.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732526633.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.542 kcal (2) G-P(sol) polarization free energy of solvation -102.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds