Wall clock time and date at job start Tue Mar 31 2020 19:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47488 * 2 1 4 4 N 1.46502 * 109.47043 * 119.99813 * 2 1 3 5 5 C 1.36936 * 120.00161 * 275.00031 * 4 2 1 6 6 H 1.08002 * 119.99471 * 359.97438 * 5 4 2 7 7 C 1.38810 * 120.00395 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99841 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00210 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47201 * 89.99847 * 9 7 5 11 11 H 1.48501 * 109.47174 * 210.00137 * 9 7 5 12 12 H 1.48498 * 109.46878 * 329.99859 * 9 7 5 13 13 C 1.53000 * 109.47140 * 239.99473 * 2 1 3 14 14 H 1.08998 * 109.49729 * 184.93368 * 13 2 1 15 15 C 1.53043 * 109.52155 * 64.85502 * 13 2 1 16 16 C 1.53040 * 109.53709 * 178.66407 * 15 13 2 17 17 C 1.52767 * 109.38332 * 61.24231 * 16 15 13 18 18 N 1.46927 * 109.00744 * 305.58910 * 17 16 15 19 19 C 1.34772 * 120.63045 * 233.58298 * 18 17 16 20 20 O 1.21280 * 120.00260 * 179.72278 * 19 18 17 21 21 C 1.50701 * 119.99942 * 359.71585 * 19 18 17 22 22 N 1.46503 * 109.47303 * 180.02562 * 21 19 18 23 23 N 1.40174 * 126.35023 * 269.97544 * 22 21 19 24 24 C 1.29398 * 108.13862 * 180.02562 * 23 22 21 25 25 N 1.37356 * 108.83241 * 0.26838 * 24 23 22 26 26 C 1.46493 * 125.83567 * 179.73045 * 25 24 23 27 27 C 1.34817 * 108.33356 * 359.56451 * 25 24 23 28 28 O 1.21816 * 126.30819 * 180.16469 * 27 25 24 29 29 C 1.46923 * 118.73772 * 53.30653 * 18 17 16 30 30 H 1.08998 * 109.46723 * 300.00155 * 1 2 3 31 31 H 1.08999 * 109.47199 * 60.00384 * 1 2 3 32 32 H 1.08998 * 109.46978 * 180.02562 * 1 2 3 33 33 H 0.97004 * 120.00009 * 94.99803 * 4 2 1 34 34 H 0.96999 * 119.99974 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.45833 * 298.68700 * 15 13 2 36 36 H 1.09001 * 109.45934 * 58.65198 * 15 13 2 37 37 H 1.09007 * 109.49880 * 181.31454 * 16 15 13 38 38 H 1.08996 * 109.50358 * 301.38583 * 16 15 13 39 39 H 1.08996 * 109.51311 * 185.70387 * 17 16 15 40 40 H 1.09008 * 109.42765 * 65.41854 * 17 16 15 41 41 H 1.09006 * 109.47062 * 59.99985 * 21 19 18 42 42 H 1.09000 * 109.47607 * 300.00687 * 21 19 18 43 43 H 1.08002 * 125.58061 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.46833 * 0.02603 * 26 25 24 45 45 H 1.09000 * 109.47022 * 120.02294 * 26 25 24 46 46 H 1.09003 * 109.47208 * 240.02831 * 26 25 24 47 47 H 1.08996 * 109.59131 * 66.43214 * 29 18 17 48 48 H 1.09002 * 109.58405 * 186.71630 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6123 -0.6616 3.5091 8 7 2.9263 -1.9384 3.4498 9 14 2.7914 0.2705 5.1179 10 1 1.5240 0.1794 5.8865 11 1 3.8963 -0.3226 5.9133 12 1 3.0962 1.6956 4.8330 13 6 2.0400 -0.7214 -1.2492 14 1 3.1264 -0.7988 -1.2065 15 6 1.6326 0.0661 -2.4966 16 6 2.1711 -0.6374 -3.7445 17 6 1.5672 -2.0376 -3.8375 18 7 1.8255 -2.7545 -2.5813 19 6 2.4194 -3.9643 -2.5908 20 8 2.6317 -4.5438 -1.5468 21 6 2.8196 -4.5970 -3.8987 22 7 3.4398 -5.8992 -3.6417 23 7 4.8035 -6.1420 -3.4266 24 6 4.9614 -7.4121 -3.2363 25 7 3.7375 -8.0292 -3.3244 26 6 3.4881 -9.4649 -3.1744 27 6 2.8043 -7.0874 -3.5688 28 8 1.6083 -7.2750 -3.7042 29 6 1.4295 -2.1249 -1.3143 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1527 34 1 3.2496 -2.3957 4.2418 35 1 0.5455 0.1219 -2.5518 36 1 2.0455 1.0734 -2.4411 37 1 1.9006 -0.0636 -4.6310 38 1 3.2563 -0.7152 -3.6786 39 1 2.0246 -2.5770 -4.6669 40 1 0.4920 -1.9587 -3.9988 41 1 3.5310 -3.9504 -4.4125 42 1 1.9359 -4.7326 -4.5222 43 1 5.9023 -7.9066 -3.0448 44 1 4.4294 -9.9788 -2.9795 45 1 2.8048 -9.6299 -2.3414 46 1 3.0445 -9.8544 -4.0908 47 1 0.3430 -2.0533 -1.2656 48 1 1.7941 -2.7233 -0.4793 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732526635.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:29 Heat of formation + Delta-G solvation = 32.763840 kcal Electronic energy + Delta-G solvation = -30188.377472 eV Core-core repulsion = 26088.325757 eV Total energy + Delta-G solvation = -4100.051715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.53296 -40.15839 -37.91238 -37.32772 -35.45306 -35.36189 -33.00621 -31.99953 -31.88087 -29.91071 -28.65820 -27.78644 -27.04968 -25.16593 -24.36380 -23.16441 -22.83145 -21.57621 -21.11024 -19.54217 -18.60638 -17.82889 -17.54720 -17.04266 -16.49077 -16.26848 -15.94917 -15.52896 -15.12769 -14.79354 -14.66311 -14.52680 -14.18875 -13.78216 -13.71596 -13.46671 -13.22436 -13.06691 -12.90606 -12.74838 -12.58966 -12.44917 -12.27049 -12.01697 -11.87533 -11.51081 -11.13959 -10.97695 -10.82200 -10.61844 -10.59452 -10.41063 -10.37082 -10.21058 -10.19563 -9.85963 -9.60295 -9.47792 -8.84898 -8.66023 -8.43480 -6.88715 -5.67463 -2.97247 1.51657 1.83623 2.55539 2.66965 2.89049 3.17263 3.48023 3.52467 3.54776 4.19178 4.37932 4.54208 4.62881 4.68769 4.71588 4.87966 4.91084 4.95884 5.01609 5.17434 5.22126 5.25636 5.36850 5.40241 5.63230 5.64311 5.67672 5.78487 5.85330 5.88920 5.91281 5.99069 6.10425 6.16462 6.27854 6.34233 6.40318 6.43685 6.60475 6.67559 6.79623 6.94200 7.16854 7.46157 7.46881 7.76486 7.91318 8.25789 8.49961 9.60702 10.19340 10.53265 11.54615 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011587 B = 0.003091 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.000118 B = 9057.369520 C =10796.178692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.180 3.820 3 H 0.049 0.951 4 N -0.726 5.726 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.929 5.929 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.103 4.103 14 H 0.074 0.926 15 C -0.114 4.114 16 C -0.135 4.135 17 C 0.105 3.895 18 N -0.608 5.608 19 C 0.493 3.507 20 O -0.515 6.515 21 C 0.146 3.854 22 N -0.437 5.437 23 N -0.271 5.271 24 C 0.255 3.745 25 N -0.562 5.562 26 C 0.102 3.898 27 C 0.653 3.347 28 O -0.553 6.553 29 C 0.117 3.883 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.232 0.768 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.222 -8.925 -22.780 24.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.070 3.930 3 H 0.067 0.933 4 N -0.368 5.368 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.577 5.577 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C -0.123 4.123 14 H 0.092 0.908 15 C -0.152 4.152 16 C -0.173 4.173 17 C -0.018 4.018 18 N -0.343 5.343 19 C 0.278 3.722 20 O -0.390 6.390 21 C 0.020 3.980 22 N -0.257 5.257 23 N -0.092 5.092 24 C -0.044 4.044 25 N -0.291 5.291 26 C -0.040 4.040 27 C 0.352 3.648 28 O -0.427 6.427 29 C -0.004 4.004 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.219 0.781 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.248 0.752 44 H 0.112 0.888 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.924 -8.318 -22.231 23.814 hybrid contribution -0.117 -0.464 1.124 1.222 sum 1.807 -8.781 -21.106 22.932 Atomic orbital electron populations 1.22581 0.99564 1.00892 0.99944 1.20172 0.91796 0.95258 0.85778 0.93307 1.42509 1.78101 1.10826 1.05316 1.19213 1.36610 0.93805 0.87391 0.91262 1.24755 1.02255 0.95957 0.98022 1.69684 1.50686 1.08634 1.28743 0.86224 0.77243 0.78745 0.84174 1.21820 1.21853 1.20843 1.21784 1.01012 0.94210 0.95340 0.90763 1.21604 1.01099 0.98977 0.93524 1.21855 1.01206 0.95238 0.98995 1.21695 1.01044 0.93443 0.85621 1.48149 1.60090 1.17754 1.08304 1.20808 0.78268 0.81679 0.91395 1.90797 1.53108 1.61719 1.33335 1.21274 0.99611 0.80964 0.96132 1.48214 1.04181 1.06485 1.66817 1.76999 0.96333 1.14274 1.21597 1.25941 0.91364 0.89017 0.98121 1.45853 1.07855 1.09699 1.65697 1.21795 1.03515 0.75104 1.03563 1.16627 0.85355 0.81480 0.81320 1.91078 1.10336 1.82667 1.58570 1.21861 0.99372 0.93812 0.85393 0.92895 0.94289 0.93247 0.78088 0.93545 0.91458 0.91549 0.90773 0.91432 0.90411 0.90974 0.85894 0.86042 0.75224 0.88830 0.90416 0.90542 0.91033 0.88297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 8.77 37.16 0.33 -2.72 16 2 C 0.18 3.58 2.67 -67.93 -0.18 3.40 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 N -0.73 -18.70 5.06 -53.42 -0.27 -18.97 16 5 C -0.24 -6.80 9.93 -15.06 -0.15 -6.95 16 6 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -29.36 13.06 55.49 0.72 -28.63 16 9 Si 0.90 23.05 29.55 -169.99 -5.02 18.03 16 10 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 11 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 13 C -0.10 -1.71 2.27 -90.50 -0.21 -1.91 16 14 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 15 C -0.11 -1.38 4.89 -26.69 -0.13 -1.51 16 16 C -0.13 -1.27 6.06 -26.83 -0.16 -1.43 16 17 C 0.11 1.00 6.31 -3.93 -0.02 0.98 16 18 N -0.61 -8.76 2.98 -173.03 -0.52 -9.27 16 19 C 0.49 8.11 7.77 -10.99 -0.09 8.03 16 20 O -0.52 -11.32 15.84 5.56 0.09 -11.24 16 21 C 0.15 1.78 5.22 -5.19 -0.03 1.75 16 22 N -0.44 -6.24 3.11 -66.30 -0.21 -6.44 16 23 N -0.27 -3.45 12.53 29.87 0.37 -3.08 16 24 C 0.25 2.27 12.61 -89.12 -1.12 1.14 16 25 N -0.56 -5.97 3.14 -130.11 -0.41 -6.38 16 26 C 0.10 0.64 11.08 59.84 0.66 1.30 16 27 C 0.65 9.87 8.61 -86.73 -0.75 9.13 16 28 O -0.55 -10.05 17.76 5.08 0.09 -9.96 16 29 C 0.12 2.02 5.18 -3.71 -0.02 2.00 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.57 6.59 -51.93 -0.34 0.22 16 32 H 0.05 0.90 6.23 -51.93 -0.32 0.58 16 33 H 0.38 10.79 6.47 -40.82 -0.26 10.53 16 34 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 35 H 0.07 0.77 6.63 -51.93 -0.34 0.42 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.52 5.93 -51.93 -0.31 0.21 16 40 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.12 1.10 7.68 -51.93 -0.40 0.70 16 42 H 0.12 1.22 7.92 -51.93 -0.41 0.80 16 43 H 0.23 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.09 0.21 8.07 -51.93 -0.42 -0.21 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.07 1.19 6.07 -51.93 -0.31 0.88 16 48 H 0.10 2.17 5.82 -51.93 -0.30 1.87 16 LS Contribution 386.04 15.07 5.82 5.82 Total: -1.00 -41.17 386.04 -8.49 -49.66 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.20 Total: 7.76 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: -1.96 Total: 12.70 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -0.30 Total: -72.77 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: 0.18 Total: -21.19 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -41.17 -8.49 -49.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732526635.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.424 kcal (2) G-P(sol) polarization free energy of solvation -41.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds