Wall clock time and date at job start Tue Mar 31 2020 19:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47488 * 2 1 4 4 N 1.46502 * 109.47043 * 119.99813 * 2 1 3 5 5 C 1.36936 * 120.00161 * 275.00031 * 4 2 1 6 6 H 1.08002 * 119.99471 * 359.97438 * 5 4 2 7 7 C 1.38810 * 120.00395 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99841 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00210 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47201 * 89.99847 * 9 7 5 11 11 H 1.48501 * 109.47174 * 210.00137 * 9 7 5 12 12 H 1.48498 * 109.46878 * 329.99859 * 9 7 5 13 13 C 1.53000 * 109.47140 * 239.99473 * 2 1 3 14 14 H 1.08998 * 109.49729 * 184.93368 * 13 2 1 15 15 C 1.53043 * 109.52155 * 64.85502 * 13 2 1 16 16 C 1.53040 * 109.53709 * 178.66407 * 15 13 2 17 17 C 1.52767 * 109.38332 * 61.24231 * 16 15 13 18 18 N 1.46927 * 109.00744 * 305.58910 * 17 16 15 19 19 C 1.34772 * 120.63045 * 233.58298 * 18 17 16 20 20 O 1.21280 * 120.00260 * 179.72278 * 19 18 17 21 21 C 1.50701 * 119.99942 * 359.71585 * 19 18 17 22 22 N 1.46503 * 109.47303 * 180.02562 * 21 19 18 23 23 N 1.40174 * 126.35023 * 269.97544 * 22 21 19 24 24 C 1.29398 * 108.13862 * 180.02562 * 23 22 21 25 25 N 1.37356 * 108.83241 * 0.26838 * 24 23 22 26 26 C 1.46493 * 125.83567 * 179.73045 * 25 24 23 27 27 C 1.34817 * 108.33356 * 359.56451 * 25 24 23 28 28 O 1.21816 * 126.30819 * 180.16469 * 27 25 24 29 29 C 1.46923 * 118.73772 * 53.30653 * 18 17 16 30 30 H 1.08998 * 109.46723 * 300.00155 * 1 2 3 31 31 H 1.08999 * 109.47199 * 60.00384 * 1 2 3 32 32 H 1.08998 * 109.46978 * 180.02562 * 1 2 3 33 33 H 0.97004 * 120.00009 * 94.99803 * 4 2 1 34 34 H 0.96999 * 119.99974 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.45833 * 298.68700 * 15 13 2 36 36 H 1.09001 * 109.45934 * 58.65198 * 15 13 2 37 37 H 1.09007 * 109.49880 * 181.31454 * 16 15 13 38 38 H 1.08996 * 109.50358 * 301.38583 * 16 15 13 39 39 H 1.08996 * 109.51311 * 185.70387 * 17 16 15 40 40 H 1.09008 * 109.42765 * 65.41854 * 17 16 15 41 41 H 1.09006 * 109.47062 * 59.99985 * 21 19 18 42 42 H 1.09000 * 109.47607 * 300.00687 * 21 19 18 43 43 H 1.08002 * 125.58061 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.46833 * 0.02603 * 26 25 24 45 45 H 1.09000 * 109.47022 * 120.02294 * 26 25 24 46 46 H 1.09003 * 109.47208 * 240.02831 * 26 25 24 47 47 H 1.08996 * 109.59131 * 66.43214 * 29 18 17 48 48 H 1.09002 * 109.58405 * 186.71630 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6123 -0.6616 3.5091 8 7 2.9263 -1.9384 3.4498 9 14 2.7914 0.2705 5.1179 10 1 1.5240 0.1794 5.8865 11 1 3.8963 -0.3226 5.9133 12 1 3.0962 1.6956 4.8330 13 6 2.0400 -0.7214 -1.2492 14 1 3.1264 -0.7988 -1.2065 15 6 1.6326 0.0661 -2.4966 16 6 2.1711 -0.6374 -3.7445 17 6 1.5672 -2.0376 -3.8375 18 7 1.8255 -2.7545 -2.5813 19 6 2.4194 -3.9643 -2.5908 20 8 2.6317 -4.5438 -1.5468 21 6 2.8196 -4.5970 -3.8987 22 7 3.4398 -5.8992 -3.6417 23 7 4.8035 -6.1420 -3.4266 24 6 4.9614 -7.4121 -3.2363 25 7 3.7375 -8.0292 -3.3244 26 6 3.4881 -9.4649 -3.1744 27 6 2.8043 -7.0874 -3.5688 28 8 1.6083 -7.2750 -3.7042 29 6 1.4295 -2.1249 -1.3143 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1527 34 1 3.2496 -2.3957 4.2418 35 1 0.5455 0.1219 -2.5518 36 1 2.0455 1.0734 -2.4411 37 1 1.9006 -0.0636 -4.6310 38 1 3.2563 -0.7152 -3.6786 39 1 2.0246 -2.5770 -4.6669 40 1 0.4920 -1.9587 -3.9988 41 1 3.5310 -3.9504 -4.4125 42 1 1.9359 -4.7326 -4.5222 43 1 5.9023 -7.9066 -3.0448 44 1 4.4294 -9.9788 -2.9795 45 1 2.8048 -9.6299 -2.3414 46 1 3.0445 -9.8544 -4.0908 47 1 0.3430 -2.0533 -1.2656 48 1 1.7941 -2.7233 -0.4793 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732526635.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:28 Heat of formation + Delta-G solvation = 2.678345 kcal Electronic energy + Delta-G solvation = -30189.682077 eV Core-core repulsion = 26088.325757 eV Total energy + Delta-G solvation = -4101.356320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.44250 -41.37354 -39.26599 -38.44506 -36.98866 -36.26421 -34.72317 -33.27657 -32.91392 -31.52116 -29.91787 -29.08961 -27.86138 -26.39255 -26.03404 -24.65881 -23.72722 -22.57274 -22.27516 -20.85130 -19.87557 -19.27776 -18.77738 -18.44890 -17.53768 -17.19456 -17.03958 -16.71892 -16.65366 -16.22908 -15.84428 -15.52602 -15.49583 -15.23573 -15.17667 -14.53748 -14.43676 -14.09332 -14.01994 -13.94350 -13.59930 -13.51239 -13.38486 -13.29239 -12.99079 -12.95011 -12.85348 -12.67300 -12.33516 -12.10063 -11.91407 -11.80973 -11.77274 -11.59656 -11.43396 -11.36016 -11.18783 -10.95481 -10.72027 -9.68340 -9.65382 -9.03154 -7.94128 -5.24057 0.63767 1.06554 1.42706 1.44829 1.45941 1.52038 1.54154 1.94547 2.26567 2.54454 3.35442 3.38457 3.41805 3.74054 3.86757 3.90945 4.01454 4.06555 4.07361 4.09752 4.16753 4.30353 4.38503 4.39248 4.46347 4.58513 4.62208 4.71816 4.76204 4.81996 4.84854 4.88832 4.91476 4.96885 5.09294 5.10643 5.17149 5.24274 5.38121 5.44809 5.48868 5.54955 5.65051 5.67816 6.26649 6.32238 6.57518 6.88106 7.05102 7.31111 8.09822 8.31215 9.29509 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011587 B = 0.003091 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.000118 B = 9057.369520 C =10796.178692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.171 3.829 3 H 0.049 0.951 4 N -0.742 5.742 5 C -0.235 4.235 6 H 0.079 0.921 7 C -0.084 4.084 8 N -0.975 5.975 9 Si 0.975 3.025 10 H -0.288 1.288 11 H -0.298 1.298 12 H -0.265 1.265 13 C -0.089 4.089 14 H 0.044 0.956 15 C -0.109 4.109 16 C -0.128 4.128 17 C 0.094 3.906 18 N -0.603 5.603 19 C 0.483 3.517 20 O -0.587 6.587 21 C 0.149 3.851 22 N -0.447 5.447 23 N -0.313 5.313 24 C 0.277 3.723 25 N -0.560 5.560 26 C 0.094 3.906 27 C 0.631 3.369 28 O -0.599 6.599 29 C 0.125 3.875 30 H 0.033 0.967 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.367 0.633 34 H 0.248 0.752 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.059 0.941 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.160 0.840 42 H 0.145 0.855 43 H 0.290 0.710 44 H 0.143 0.857 45 H 0.062 0.938 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.591 -7.778 -25.752 27.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.063 3.937 3 H 0.067 0.933 4 N -0.383 5.383 5 C -0.367 4.367 6 H 0.097 0.903 7 C -0.276 4.276 8 N -0.626 5.626 9 Si 0.804 3.196 10 H -0.215 1.215 11 H -0.225 1.225 12 H -0.190 1.190 13 C -0.109 4.109 14 H 0.062 0.938 15 C -0.147 4.147 16 C -0.166 4.166 17 C -0.026 4.026 18 N -0.336 5.336 19 C 0.270 3.730 20 O -0.467 6.467 21 C 0.024 3.976 22 N -0.266 5.266 23 N -0.135 5.135 24 C -0.021 4.021 25 N -0.287 5.287 26 C -0.047 4.047 27 C 0.330 3.670 28 O -0.476 6.476 29 C 0.002 3.998 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.199 0.801 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.134 0.866 38 H 0.078 0.922 39 H 0.133 0.867 40 H 0.111 0.889 41 H 0.177 0.823 42 H 0.163 0.837 43 H 0.305 0.695 44 H 0.161 0.839 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.096 0.904 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.289 -7.103 -25.285 26.364 hybrid contribution -0.223 -0.834 1.990 2.169 sum 2.066 -7.937 -23.295 24.697 Atomic orbital electron populations 1.22404 0.97479 1.00644 1.01176 1.20501 0.93125 0.94969 0.85127 0.93259 1.42807 1.78489 1.10269 1.06705 1.19674 1.34497 0.94224 0.88336 0.90272 1.25651 1.03223 0.96865 1.01838 1.69891 1.52895 1.10602 1.29251 0.85105 0.76786 0.78104 0.79585 1.21490 1.22496 1.18959 1.21594 0.98864 0.94136 0.96350 0.93767 1.21612 1.02239 0.98793 0.92044 1.21860 1.00624 0.95082 0.99008 1.22189 1.02925 0.93538 0.83991 1.48274 1.58853 1.17456 1.09030 1.21722 0.77292 0.81769 0.92184 1.90758 1.56130 1.63683 1.36102 1.21502 1.01485 0.80942 0.93677 1.48436 1.04940 1.06696 1.66481 1.76994 0.95429 1.16508 1.24520 1.27153 0.92322 0.88079 0.94519 1.46144 1.07595 1.10669 1.64294 1.22168 1.06042 0.73085 1.03360 1.17072 0.85536 0.82693 0.81713 1.91014 1.12261 1.83581 1.60752 1.21507 0.99332 0.93484 0.85451 0.94775 0.89823 0.94223 0.80084 0.94336 0.89845 0.90612 0.86582 0.92186 0.86733 0.88891 0.82289 0.83731 0.69522 0.83911 0.91950 0.89922 0.90396 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.54 8.77 71.98 0.63 -4.91 16 2 C 0.17 6.88 2.67 44.99 0.12 7.00 16 3 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 4 N -0.74 -40.10 5.06 -322.94 -1.63 -41.73 16 5 C -0.24 -13.75 9.93 84.03 0.83 -12.92 16 6 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 7 C -0.08 -5.14 5.50 84.86 0.47 -4.68 16 8 N -0.98 -64.76 13.06 21.65 0.28 -64.48 16 9 Si 0.98 48.65 29.55 68.60 2.03 50.67 16 10 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 11 H -0.30 -15.03 7.11 99.48 0.71 -14.33 16 12 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 13 C -0.09 -2.98 2.27 -10.71 -0.02 -3.00 16 14 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 15 C -0.11 -2.31 4.89 30.62 0.15 -2.16 16 16 C -0.13 -1.89 6.06 30.53 0.19 -1.71 16 17 C 0.09 1.47 6.31 86.22 0.54 2.02 16 18 N -0.60 -17.31 2.98 -819.73 -2.44 -19.76 16 19 C 0.48 16.43 7.77 87.66 0.68 17.11 16 20 O -0.59 -27.92 15.84 -3.03 -0.05 -27.96 16 21 C 0.15 3.51 5.22 85.63 0.45 3.96 16 22 N -0.45 -12.77 3.11 -481.76 -1.50 -14.27 16 23 N -0.31 -7.74 12.53 -59.42 -0.74 -8.48 16 24 C 0.28 4.37 12.61 179.83 2.27 6.64 16 25 N -0.56 -11.39 3.14 -683.69 -2.15 -13.54 16 26 C 0.09 1.03 11.08 127.77 1.42 2.45 16 27 C 0.63 19.45 8.61 178.99 1.54 20.99 16 28 O -0.60 -22.66 17.76 -4.72 -0.08 -22.74 16 29 C 0.13 4.52 5.18 86.36 0.45 4.97 16 30 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 2.18 6.59 -2.39 -0.02 2.17 16 32 H 0.04 1.46 6.23 -2.39 -0.01 1.44 16 33 H 0.37 22.22 6.47 -92.71 -0.60 21.62 16 34 H 0.25 15.99 8.31 -92.71 -0.77 15.22 16 35 H 0.08 1.53 6.63 -2.39 -0.02 1.52 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.12 0.90 8.14 -2.38 -0.02 0.89 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.11 1.00 5.93 -2.39 -0.01 0.98 16 40 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.16 2.47 7.68 -2.38 -0.02 2.45 16 42 H 0.15 2.66 7.92 -2.39 -0.02 2.64 16 43 H 0.29 0.50 8.06 -2.91 -0.02 0.47 16 44 H 0.14 0.12 8.07 -2.39 -0.02 0.10 16 45 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 47 H 0.08 2.66 6.07 -2.39 -0.01 2.64 16 48 H 0.04 1.93 5.82 -2.39 -0.01 1.92 16 Total: -1.00 -100.93 386.04 3.80 -97.13 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.38 Total: 29.40 kcal Atomic # 6 Polarization: 26.05 SS G_CDS: 9.71 Total: 35.75 kcal Atomic # 7 Polarization: -154.07 SS G_CDS: -8.18 Total: -162.25 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -0.13 Total: -50.70 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.03 Total: 50.67 kcal Total: -100.93 3.80 -97.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732526635.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.810 kcal (2) G-P(sol) polarization free energy of solvation -100.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds