Wall clock time and date at job start Tue Mar 31 2020 20:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46490 * 109.47586 * 2 1 4 4 C 1.35031 * 124.88964 * 124.99622 * 3 2 1 5 5 C 1.35366 * 107.23082 * 180.22152 * 4 3 2 6 6 C 1.41498 * 105.50351 * 359.63314 * 5 4 3 7 7 C 1.47716 * 126.51932 * 180.09604 * 6 5 4 8 8 O 1.21562 * 119.99797 * 352.95778 * 7 6 5 9 9 N 1.34776 * 119.99661 * 172.95453 * 7 6 5 10 10 C 1.46500 * 120.00466 * 3.70594 * 9 7 6 11 11 C 1.46503 * 119.99705 * 183.70828 * 9 7 6 12 12 C 1.52999 * 109.47413 * 89.99936 * 11 9 7 13 13 N 1.46894 * 109.47178 * 180.02562 * 12 11 9 14 14 C 1.46903 * 111.00532 * 66.04379 * 13 12 11 15 15 C 1.46904 * 111.00187 * 190.00016 * 13 12 11 16 16 C 1.50699 * 109.47425 * 169.99870 * 15 13 12 17 17 O 1.21293 * 119.99970 * 359.97438 * 16 15 13 18 18 N 1.34770 * 120.00159 * 180.02562 * 16 15 13 19 19 C 1.37099 * 120.00052 * 179.97438 * 18 16 15 20 20 H 1.07996 * 119.99823 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99546 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00248 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99613 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47281 * 89.99920 * 23 21 19 25 25 H 1.48499 * 109.47257 * 209.99892 * 23 21 19 26 26 H 1.48501 * 109.47090 * 329.99934 * 23 21 19 27 27 N 1.28471 * 124.88192 * 304.97403 * 3 2 1 28 28 H 1.08999 * 109.46777 * 59.99842 * 1 2 3 29 29 H 1.08994 * 109.47580 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46941 * 300.00643 * 1 2 3 31 31 H 1.09002 * 109.46941 * 239.99357 * 2 1 3 32 32 H 1.09009 * 109.46906 * 120.00215 * 2 1 3 33 33 H 1.08002 * 126.38411 * 359.96033 * 4 3 2 34 34 H 1.07999 * 127.24813 * 179.75978 * 5 4 3 35 35 H 1.09001 * 109.47234 * 83.97543 * 10 9 7 36 36 H 1.08996 * 109.47294 * 203.98360 * 10 9 7 37 37 H 1.09009 * 109.46944 * 323.98175 * 10 9 7 38 38 H 1.09000 * 109.46859 * 210.00063 * 11 9 7 39 39 H 1.09005 * 109.46769 * 330.00143 * 11 9 7 40 40 H 1.09009 * 109.47056 * 300.00172 * 12 11 9 41 41 H 1.08996 * 109.47241 * 59.99802 * 12 11 9 42 42 H 1.09000 * 109.46748 * 59.99799 * 14 13 12 43 43 H 1.08993 * 109.47455 * 179.97438 * 14 13 12 44 44 H 1.08997 * 109.46587 * 300.00630 * 14 13 12 45 45 H 1.09002 * 109.47004 * 290.00293 * 15 13 12 46 46 H 1.08998 * 109.46697 * 49.99790 * 15 13 12 47 47 H 0.97002 * 119.99856 * 359.97438 * 18 16 15 48 48 H 0.97010 * 119.99826 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8748 1.8975 0.9073 5 6 3.0790 3.1934 0.5738 6 6 2.3012 3.4121 -0.5878 7 6 2.1863 4.6759 -1.3438 8 8 2.6935 5.6919 -0.9099 9 7 1.5193 4.7025 -2.5146 10 6 0.8393 3.4983 -2.9978 11 6 1.4743 5.9358 -3.3041 12 6 2.6590 5.9654 -4.2719 13 7 2.6142 7.2022 -5.0630 14 6 2.8290 8.3800 -4.2117 15 6 3.5901 7.1609 -6.1604 16 6 3.3510 8.3233 -7.0893 17 8 2.4555 9.1086 -6.8600 18 7 4.1316 8.4896 -8.1752 19 6 3.9138 9.5468 -9.0205 20 1 3.1170 10.2465 -8.8159 21 6 4.7183 9.7179 -10.1405 22 7 5.6882 8.8668 -10.3891 23 14 4.4220 11.1588 -11.2919 24 1 5.2258 12.3242 -10.8435 25 1 4.8240 10.7814 -12.6707 26 1 2.9807 11.5163 -11.2768 27 7 1.6938 2.2752 -0.8636 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.3118 1.3751 1.7456 34 1 3.7054 3.9092 1.0853 35 1 -0.1471 3.4291 -2.5391 36 1 0.7333 3.5509 -4.0814 37 1 1.4258 2.6186 -2.7324 38 1 0.5428 5.9718 -3.8689 39 1 1.5285 6.7963 -2.6372 40 1 3.5906 5.9293 -3.7070 41 1 2.6050 5.1049 -4.9387 42 1 3.8046 8.3077 -3.7310 43 1 2.7913 9.2818 -4.8227 44 1 2.0509 8.4241 -3.4496 45 1 4.5988 7.2235 -5.7521 46 1 3.4782 6.2269 -6.7110 47 1 4.8475 7.8614 -8.3588 48 1 6.2500 8.9865 -11.1708 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732595444.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:24 Heat of formation + Delta-G solvation = 35.810103 kcal Electronic energy + Delta-G solvation = -28644.437864 eV Core-core repulsion = 24544.518245 eV Total energy + Delta-G solvation = -4099.919619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.00328 -39.74334 -38.49231 -36.65004 -35.36118 -35.00472 -33.78016 -31.33810 -31.16829 -30.62224 -29.51603 -27.59246 -26.85059 -25.76745 -24.76173 -23.76529 -22.29284 -21.60855 -20.91577 -19.46016 -19.04869 -17.78951 -17.74825 -16.96319 -16.56558 -16.35193 -15.94105 -15.28022 -15.16995 -14.86608 -14.52758 -14.50926 -14.15029 -14.06219 -13.79057 -13.51549 -13.37678 -13.08954 -13.00905 -12.87899 -12.77161 -12.70432 -12.45402 -12.01634 -12.00654 -11.89933 -11.46036 -11.23369 -11.13248 -10.86455 -10.85664 -10.66109 -10.34806 -10.18631 -10.16055 -9.57537 -9.42056 -9.38782 -8.79311 -8.33567 -7.91563 -7.77031 -6.36336 -3.76854 1.32549 1.84117 2.03181 2.85507 3.21804 3.26139 3.29983 3.36255 3.84871 3.97572 4.13234 4.27040 4.30509 4.39658 4.40400 4.54141 4.77211 4.98310 5.05397 5.14652 5.15664 5.19520 5.23299 5.31533 5.35536 5.43698 5.49056 5.51925 5.61169 5.73384 5.78002 5.84971 5.90230 6.02508 6.07152 6.10527 6.16176 6.35219 6.38663 6.50623 6.69286 7.22964 7.36276 7.47607 7.56839 7.60502 8.07920 8.12470 8.68195 9.23901 9.60836 10.13125 10.81544 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027691 B = 0.001769 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.913278 B =15822.387169 C =16056.673278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.116 3.884 3 N -0.286 5.286 4 C -0.019 4.019 5 C -0.179 4.179 6 C -0.013 4.013 7 C 0.599 3.401 8 O -0.531 6.531 9 N -0.602 5.602 10 C 0.076 3.924 11 C 0.118 3.882 12 C 0.042 3.958 13 N -0.516 5.516 14 C 0.020 3.980 15 C 0.047 3.953 16 C 0.446 3.554 17 O -0.576 6.576 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.270 1.270 27 N -0.255 5.255 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.181 0.819 34 H 0.162 0.838 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.034 0.966 41 H 0.072 0.928 42 H 0.016 0.984 43 H 0.095 0.905 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.805 -22.943 22.465 32.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.004 4.004 3 N -0.075 5.075 4 C -0.162 4.162 5 C -0.207 4.207 6 C -0.173 4.173 7 C 0.386 3.614 8 O -0.405 6.405 9 N -0.335 5.335 10 C -0.067 4.067 11 C -0.004 4.004 12 C -0.088 4.088 13 N -0.240 5.240 14 C -0.127 4.127 15 C -0.085 4.085 16 C 0.231 3.769 17 O -0.460 6.460 18 N -0.203 5.203 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.194 1.194 27 N -0.092 5.092 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.198 0.802 34 H 0.179 0.821 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.052 0.948 41 H 0.091 0.909 42 H 0.034 0.966 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.265 -22.451 21.719 32.312 hybrid contribution 1.809 0.292 0.171 1.840 sum -6.456 -22.159 21.890 31.810 Atomic orbital electron populations 1.22078 0.93003 1.03449 1.04013 1.22012 0.96764 0.76789 1.04800 1.45791 1.32326 1.10521 1.18856 1.22877 0.99286 0.95415 0.98587 1.21785 1.04646 0.96067 0.98175 1.21958 1.02856 0.93075 0.99393 1.17011 0.78307 0.85931 0.80198 1.90805 1.47757 1.33365 1.68595 1.47680 1.52016 1.13217 1.20598 1.22117 0.97570 0.87390 0.99640 1.21530 0.99275 0.86138 0.93461 1.22437 0.97418 0.93392 0.95516 1.61525 1.50333 1.01719 1.10463 1.22584 0.98420 0.95007 0.96723 1.21856 0.93805 0.99557 0.93238 1.19734 0.85317 0.87993 0.83819 1.90482 1.33946 1.46918 1.74683 1.41866 1.30241 1.26454 1.21712 1.19702 1.15721 1.04369 1.02877 0.87907 1.25255 0.95813 0.98782 0.98189 1.69620 1.19267 1.36664 1.28912 0.85860 0.78880 0.80662 0.78888 1.20471 1.20989 1.19427 1.73662 1.22369 0.98133 1.15018 0.90663 0.90201 0.91847 0.88807 0.87925 0.80213 0.82073 0.92664 0.91106 0.88963 0.89203 0.89327 0.94770 0.90941 0.96566 0.88620 0.91952 0.93473 0.89502 0.77516 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.50 10.02 37.16 0.37 -0.13 16 2 C 0.12 0.34 7.12 -4.05 -0.03 0.31 16 3 N -0.29 -2.00 3.41 -61.33 -0.21 -2.21 16 4 C -0.02 -0.13 11.40 -17.17 -0.20 -0.32 16 5 C -0.18 -1.76 10.81 -39.36 -0.43 -2.19 16 6 C -0.01 -0.16 6.81 -82.76 -0.56 -0.72 16 7 C 0.60 8.50 7.68 -12.39 -0.10 8.41 16 8 O -0.53 -9.17 16.49 5.31 0.09 -9.09 16 9 N -0.60 -7.54 2.87 -182.74 -0.53 -8.07 16 10 C 0.08 0.72 9.62 59.85 0.58 1.30 16 11 C 0.12 1.60 5.33 -4.04 -0.02 1.58 16 12 C 0.04 0.62 5.28 -3.83 -0.02 0.60 16 13 N -0.52 -9.30 4.50 -244.37 -1.10 -10.40 16 14 C 0.02 0.37 8.96 60.07 0.54 0.91 16 15 C 0.05 0.90 5.45 -4.97 -0.03 0.87 16 16 C 0.45 10.88 7.47 -10.99 -0.08 10.80 16 17 O -0.58 -15.87 13.91 5.55 0.08 -15.80 16 18 N -0.57 -14.72 5.29 -10.97 -0.06 -14.78 16 19 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -25.01 13.05 55.50 0.72 -24.28 16 23 Si 0.93 21.42 29.55 -169.99 -5.02 16.40 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 N -0.26 -2.48 8.21 33.42 0.27 -2.21 16 28 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 29 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.10 0.03 8.04 -51.92 -0.42 -0.39 16 33 H 0.18 0.50 8.06 -52.49 -0.42 0.07 16 34 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.60 8.03 -51.93 -0.42 0.18 16 37 H 0.09 0.87 5.38 -51.92 -0.28 0.59 16 38 H 0.09 1.13 8.07 -51.93 -0.42 0.71 16 39 H 0.09 1.33 5.78 -51.93 -0.30 1.03 16 40 H 0.03 0.54 8.12 -51.92 -0.42 0.12 16 41 H 0.07 0.99 7.93 -51.93 -0.41 0.57 16 42 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.10 2.02 5.82 -51.93 -0.30 1.72 16 44 H 0.06 1.02 6.47 -51.93 -0.34 0.69 16 45 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 46 H 0.09 1.49 7.93 -51.93 -0.41 1.08 16 47 H 0.39 9.77 7.90 -40.82 -0.32 9.45 16 48 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 397.71 15.07 5.99 5.99 Total: -1.00 -35.70 397.71 -7.32 -43.03 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -7.35 Total: 8.11 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: -0.21 Total: 13.31 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.89 Total: -61.95 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: 0.16 Total: -24.88 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.70 -7.32 -43.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732595444.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.837 kcal (2) G-P(sol) polarization free energy of solvation -35.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds