Wall clock time and date at job start Tue Mar 31 2020 20:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46490 * 109.47586 * 2 1 4 4 C 1.35031 * 124.88964 * 124.99622 * 3 2 1 5 5 C 1.35366 * 107.23082 * 180.22152 * 4 3 2 6 6 C 1.41498 * 105.50351 * 359.63314 * 5 4 3 7 7 C 1.47716 * 126.51932 * 180.09604 * 6 5 4 8 8 O 1.21562 * 119.99797 * 352.95778 * 7 6 5 9 9 N 1.34776 * 119.99661 * 172.95453 * 7 6 5 10 10 C 1.46500 * 120.00466 * 3.70594 * 9 7 6 11 11 C 1.46503 * 119.99705 * 183.70828 * 9 7 6 12 12 C 1.52999 * 109.47413 * 89.99936 * 11 9 7 13 13 N 1.46894 * 109.47178 * 180.02562 * 12 11 9 14 14 C 1.46903 * 111.00532 * 66.04379 * 13 12 11 15 15 C 1.46904 * 111.00187 * 190.00016 * 13 12 11 16 16 C 1.50699 * 109.47425 * 169.99870 * 15 13 12 17 17 O 1.21293 * 119.99970 * 359.97438 * 16 15 13 18 18 N 1.34770 * 120.00159 * 180.02562 * 16 15 13 19 19 C 1.37099 * 120.00052 * 179.97438 * 18 16 15 20 20 H 1.07996 * 119.99823 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99546 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00248 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99613 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47281 * 89.99920 * 23 21 19 25 25 H 1.48499 * 109.47257 * 209.99892 * 23 21 19 26 26 H 1.48501 * 109.47090 * 329.99934 * 23 21 19 27 27 N 1.28471 * 124.88192 * 304.97403 * 3 2 1 28 28 H 1.08999 * 109.46777 * 59.99842 * 1 2 3 29 29 H 1.08994 * 109.47580 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46941 * 300.00643 * 1 2 3 31 31 H 1.09002 * 109.46941 * 239.99357 * 2 1 3 32 32 H 1.09009 * 109.46906 * 120.00215 * 2 1 3 33 33 H 1.08002 * 126.38411 * 359.96033 * 4 3 2 34 34 H 1.07999 * 127.24813 * 179.75978 * 5 4 3 35 35 H 1.09001 * 109.47234 * 83.97543 * 10 9 7 36 36 H 1.08996 * 109.47294 * 203.98360 * 10 9 7 37 37 H 1.09009 * 109.46944 * 323.98175 * 10 9 7 38 38 H 1.09000 * 109.46859 * 210.00063 * 11 9 7 39 39 H 1.09005 * 109.46769 * 330.00143 * 11 9 7 40 40 H 1.09009 * 109.47056 * 300.00172 * 12 11 9 41 41 H 1.08996 * 109.47241 * 59.99802 * 12 11 9 42 42 H 1.09000 * 109.46748 * 59.99799 * 14 13 12 43 43 H 1.08993 * 109.47455 * 179.97438 * 14 13 12 44 44 H 1.08997 * 109.46587 * 300.00630 * 14 13 12 45 45 H 1.09002 * 109.47004 * 290.00293 * 15 13 12 46 46 H 1.08998 * 109.46697 * 49.99790 * 15 13 12 47 47 H 0.97002 * 119.99856 * 359.97438 * 18 16 15 48 48 H 0.97010 * 119.99826 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8748 1.8975 0.9073 5 6 3.0790 3.1934 0.5738 6 6 2.3012 3.4121 -0.5878 7 6 2.1863 4.6759 -1.3438 8 8 2.6935 5.6919 -0.9099 9 7 1.5193 4.7025 -2.5146 10 6 0.8393 3.4983 -2.9978 11 6 1.4743 5.9358 -3.3041 12 6 2.6590 5.9654 -4.2719 13 7 2.6142 7.2022 -5.0630 14 6 2.8290 8.3800 -4.2117 15 6 3.5901 7.1609 -6.1604 16 6 3.3510 8.3233 -7.0893 17 8 2.4555 9.1086 -6.8600 18 7 4.1316 8.4896 -8.1752 19 6 3.9138 9.5468 -9.0205 20 1 3.1170 10.2465 -8.8159 21 6 4.7183 9.7179 -10.1405 22 7 5.6882 8.8668 -10.3891 23 14 4.4220 11.1588 -11.2919 24 1 5.2258 12.3242 -10.8435 25 1 4.8240 10.7814 -12.6707 26 1 2.9807 11.5163 -11.2768 27 7 1.6938 2.2752 -0.8636 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.3118 1.3751 1.7456 34 1 3.7054 3.9092 1.0853 35 1 -0.1471 3.4291 -2.5391 36 1 0.7333 3.5509 -4.0814 37 1 1.4258 2.6186 -2.7324 38 1 0.5428 5.9718 -3.8689 39 1 1.5285 6.7963 -2.6372 40 1 3.5906 5.9293 -3.7070 41 1 2.6050 5.1049 -4.9387 42 1 3.8046 8.3077 -3.7310 43 1 2.7913 9.2818 -4.8227 44 1 2.0509 8.4241 -3.4496 45 1 4.5988 7.2235 -5.7521 46 1 3.4782 6.2269 -6.7110 47 1 4.8475 7.8614 -8.3588 48 1 6.2500 8.9865 -11.1708 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732595444.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:23 Heat of formation + Delta-G solvation = 9.603266 kcal Electronic energy + Delta-G solvation = -28645.574278 eV Core-core repulsion = 24544.518245 eV Total energy + Delta-G solvation = -4101.056033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.63244 -40.83474 -40.28238 -38.12819 -36.54311 -35.82845 -35.42680 -33.27817 -32.08376 -31.31956 -30.46509 -29.15110 -27.77067 -27.12385 -26.17745 -24.77876 -23.14050 -22.32881 -21.94313 -21.00530 -20.29043 -19.84159 -18.43203 -17.93243 -17.72272 -17.31199 -17.18831 -16.62555 -16.54248 -16.12811 -15.99719 -15.62932 -15.37477 -15.22551 -15.01614 -14.62228 -14.52794 -14.11868 -14.02818 -13.89993 -13.76656 -13.44890 -13.34179 -13.28614 -13.09535 -12.99280 -12.93239 -12.61466 -12.54787 -12.39611 -12.21451 -12.11065 -11.87864 -11.59556 -11.45331 -11.21888 -10.33559 -10.20645 -10.06902 -9.99339 -9.70994 -9.29933 -8.45352 -5.93983 0.52049 1.20963 1.38725 1.42161 1.52555 1.55415 1.92961 2.05685 2.30098 2.31979 2.83087 3.21081 3.27711 3.41444 3.75690 3.92804 3.99155 4.06919 4.09389 4.21123 4.25735 4.34212 4.38430 4.41054 4.45347 4.50379 4.58185 4.60791 4.69902 4.73585 4.76798 4.80536 4.84963 4.89117 4.92249 5.03392 5.16648 5.26745 5.33424 5.42274 5.51143 5.83291 5.94223 6.02463 6.12050 6.27561 6.61716 6.84869 7.10611 7.13977 7.57076 8.12997 8.72154 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027691 B = 0.001769 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.913278 B =15822.387169 C =16056.673278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.107 3.893 3 N -0.279 5.279 4 C 0.003 3.997 5 C -0.209 4.209 6 C -0.048 4.048 7 C 0.592 3.408 8 O -0.576 6.576 9 N -0.600 5.600 10 C 0.078 3.922 11 C 0.124 3.876 12 C 0.052 3.948 13 N -0.527 5.527 14 C 0.028 3.972 15 C 0.058 3.942 16 C 0.443 3.557 17 O -0.612 6.612 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.273 1.273 27 N -0.258 5.258 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.139 0.861 33 H 0.225 0.775 34 H 0.156 0.844 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.092 0.908 42 H 0.020 0.980 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.114 0.886 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.854 -25.887 22.969 35.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.068 5.068 4 C -0.140 4.140 5 C -0.237 4.237 6 C -0.206 4.206 7 C 0.380 3.620 8 O -0.454 6.454 9 N -0.332 5.332 10 C -0.064 4.064 11 C 0.001 3.999 12 C -0.077 4.077 13 N -0.252 5.252 14 C -0.120 4.120 15 C -0.074 4.074 16 C 0.230 3.770 17 O -0.498 6.498 18 N -0.212 5.212 19 C -0.461 4.461 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.197 1.197 27 N -0.096 5.096 28 H 0.074 0.926 29 H 0.121 0.879 30 H 0.072 0.928 31 H 0.124 0.876 32 H 0.157 0.843 33 H 0.242 0.758 34 H 0.174 0.826 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.042 0.958 41 H 0.110 0.890 42 H 0.038 0.962 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.132 0.868 47 H 0.229 0.771 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.324 -25.451 22.214 34.792 hybrid contribution 1.777 1.060 0.099 2.072 sum -6.546 -24.390 22.313 33.699 Atomic orbital electron populations 1.22061 0.93151 1.04512 1.02566 1.22477 0.96658 0.74730 1.07228 1.46291 1.31335 1.11353 1.17821 1.23443 0.97642 0.94227 0.98666 1.21965 1.05538 0.97838 0.98335 1.21759 1.05141 0.93011 1.00646 1.17445 0.77668 0.86395 0.80475 1.90760 1.49756 1.35081 1.69800 1.47756 1.51696 1.13646 1.20064 1.22245 0.97594 0.86150 1.00452 1.21385 0.99244 0.86308 0.92970 1.22415 0.97459 0.92336 0.95504 1.61494 1.50097 1.02817 1.10756 1.22432 0.99239 0.93962 0.96372 1.21753 0.94805 0.97999 0.92805 1.20653 0.84031 0.88665 0.83601 1.90461 1.35313 1.48568 1.75434 1.41923 1.30801 1.26270 1.22173 1.19673 1.16345 1.05506 1.04613 0.90224 1.26052 0.95160 1.01172 0.98995 1.69682 1.19445 1.37666 1.29442 0.84913 0.78523 0.77546 0.77247 1.19744 1.19486 1.19740 1.73582 1.22253 0.97935 1.15877 0.92582 0.87899 0.92787 0.87645 0.84287 0.75808 0.82606 0.91906 0.89679 0.88684 0.87989 0.91212 0.95775 0.89005 0.96165 0.91892 0.90581 0.92032 0.86828 0.77061 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.57 10.02 71.98 0.72 0.15 16 2 C 0.11 0.24 7.12 86.38 0.61 0.86 16 3 N -0.28 -3.19 3.41 -347.96 -1.19 -4.38 16 4 C 0.00 0.03 11.40 83.54 0.95 0.99 16 5 C -0.21 -4.03 10.81 22.41 0.24 -3.79 16 6 C -0.05 -1.14 6.81 42.46 0.29 -0.85 16 7 C 0.59 17.31 7.68 86.75 0.67 17.97 16 8 O -0.58 -20.99 16.49 -3.91 -0.06 -21.06 16 9 N -0.60 -14.93 2.87 -850.33 -2.44 -17.37 16 10 C 0.08 1.38 9.62 127.77 1.23 2.61 16 11 C 0.12 3.34 5.33 86.38 0.46 3.80 16 12 C 0.05 1.49 5.28 86.30 0.46 1.95 16 13 N -0.53 -18.83 4.50 -927.06 -4.17 -23.00 16 14 C 0.03 1.04 8.96 127.69 1.14 2.18 16 15 C 0.06 2.16 5.45 85.56 0.47 2.63 16 16 C 0.44 21.97 7.47 87.66 0.66 22.63 16 17 O -0.61 -34.74 13.91 -3.07 -0.04 -34.78 16 18 N -0.57 -30.40 5.29 -306.99 -1.62 -32.02 16 19 C -0.33 -19.26 9.68 84.04 0.81 -18.45 16 20 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 21 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 22 N -0.92 -50.65 13.05 21.66 0.28 -50.37 16 23 Si 0.99 43.80 29.55 68.60 2.03 45.82 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 N -0.26 -4.71 8.21 -48.17 -0.40 -5.10 16 28 H 0.06 0.42 8.08 -2.39 -0.02 0.41 16 29 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.14 -0.63 8.04 -2.38 -0.02 -0.65 16 33 H 0.23 0.20 8.06 -2.91 -0.02 0.18 16 34 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.26 8.03 -2.39 -0.02 1.25 16 37 H 0.10 1.68 5.38 -2.38 -0.01 1.67 16 38 H 0.10 2.48 8.07 -2.39 -0.02 2.46 16 39 H 0.07 2.16 5.78 -2.38 -0.01 2.14 16 40 H 0.02 0.76 8.12 -2.38 -0.02 0.74 16 41 H 0.09 2.30 7.93 -2.39 -0.02 2.28 16 42 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 2.77 5.82 -2.39 -0.01 2.75 16 44 H 0.08 2.57 6.47 -2.39 -0.02 2.55 16 45 H 0.06 2.16 8.12 -2.39 -0.02 2.14 16 46 H 0.11 3.67 7.93 -2.39 -0.02 3.65 16 47 H 0.40 19.92 7.90 -92.71 -0.73 19.19 16 48 H 0.28 14.25 8.31 -92.70 -0.77 13.48 16 Total: -1.00 -80.49 397.71 1.81 -78.68 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: 0.24 Total: 31.20 kcal Atomic # 6 Polarization: 23.19 SS G_CDS: 9.18 Total: 32.36 kcal Atomic # 7 Polarization: -122.70 SS G_CDS: -9.54 Total: -132.24 kcal Atomic # 8 Polarization: -55.73 SS G_CDS: -0.11 Total: -55.84 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -80.49 1.81 -78.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732595444.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.288 kcal (2) G-P(sol) polarization free energy of solvation -80.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds