Wall clock time and date at job start Tue Mar 31 2020 20:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.46726 * 2 1 4 4 C 1.34259 * 125.75336 * 125.00203 * 3 2 1 5 5 C 1.38045 * 107.41939 * 179.97438 * 4 3 2 6 6 C 1.47428 * 126.41432 * 180.02562 * 5 4 3 7 7 O 1.21602 * 120.00252 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99946 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99997 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47840 * 34.99187 * 9 8 6 11 11 C 1.52999 * 109.46779 * 274.99167 * 9 8 6 12 12 C 1.53007 * 109.47145 * 154.99629 * 9 8 6 13 13 C 1.53000 * 109.46914 * 294.99496 * 12 9 8 14 14 N 1.46894 * 109.46894 * 179.97438 * 13 12 9 15 15 C 1.46904 * 111.00197 * 179.97438 * 14 13 12 16 16 C 1.50693 * 109.47348 * 179.97438 * 15 14 13 17 17 O 1.21292 * 120.00196 * 0.02562 * 16 15 14 18 18 N 1.34782 * 119.99822 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99810 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00161 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00114 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99561 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00199 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47177 * 0.02562 * 23 21 19 25 25 H 1.48509 * 109.46745 * 120.00363 * 23 21 19 26 26 H 1.48502 * 109.47379 * 240.00002 * 23 21 19 27 27 C 1.41290 * 107.17003 * 359.97438 * 5 4 3 28 28 N 1.30448 * 108.01917 * 0.02562 * 27 5 4 29 29 H 1.09001 * 109.47115 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47736 * 299.99675 * 1 2 3 31 31 H 1.09000 * 109.47469 * 60.00346 * 1 2 3 32 32 H 1.09003 * 109.47179 * 239.99962 * 2 1 3 33 33 H 1.08999 * 109.46628 * 120.00021 * 2 1 3 34 34 H 1.08005 * 126.28789 * 0.24258 * 4 3 2 35 35 H 0.97000 * 120.00137 * 359.97438 * 8 6 5 36 36 H 1.09003 * 109.47378 * 300.00194 * 11 9 8 37 37 H 1.09000 * 109.47232 * 60.00088 * 11 9 8 38 38 H 1.09001 * 109.47377 * 179.97438 * 11 9 8 39 39 H 1.09000 * 109.47106 * 55.00102 * 12 9 8 40 40 H 1.09001 * 109.46834 * 174.99549 * 12 9 8 41 41 H 1.09003 * 109.47006 * 300.00157 * 13 12 9 42 42 H 1.09000 * 109.46804 * 60.00381 * 13 12 9 43 43 H 1.00898 * 111.00310 * 303.95626 * 14 13 12 44 44 H 1.08995 * 109.47540 * 300.00795 * 15 14 13 45 45 H 1.09008 * 109.46260 * 60.00113 * 15 14 13 46 46 H 0.96997 * 119.99808 * 0.02562 * 18 16 15 47 47 H 0.97007 * 120.00009 * 179.97438 * 22 21 19 48 48 H 1.07999 * 125.99006 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8689 1.9125 0.8925 5 6 3.0713 3.2308 0.5365 6 6 3.9333 4.2031 1.2331 7 8 4.5508 3.8668 2.2251 8 7 4.0360 5.4649 0.7709 9 6 4.8930 6.4309 1.4627 10 1 5.7705 5.9199 1.8588 11 6 4.1138 7.0718 2.6129 12 6 5.3355 7.5163 0.4792 13 6 6.2193 6.8938 -0.6034 14 7 6.6436 7.9358 -1.5480 15 6 7.4965 7.3737 -2.6038 16 6 7.9105 8.4695 -3.5517 17 8 7.5327 9.6070 -3.3659 18 7 8.7006 8.1855 -4.6061 19 6 9.0777 9.1826 -5.4683 20 1 8.7420 10.1956 -5.3023 21 6 9.8918 8.8898 -6.5556 22 7 10.2998 7.6572 -6.7577 23 14 10.4050 10.2481 -7.7307 24 1 9.8164 11.5366 -7.2852 25 1 11.8859 10.3588 -7.7428 26 1 9.9213 9.9289 -9.0979 27 6 2.2985 3.4736 -0.6212 28 7 1.6774 2.3690 -0.9307 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3165 1.4012 1.7320 35 1 3.5431 5.7333 -0.0203 36 1 3.2362 7.5829 2.2169 37 1 3.7985 6.2986 3.3135 38 1 4.7514 7.7902 3.1280 39 1 4.4575 7.9673 0.0168 40 1 5.8989 8.2820 1.0125 41 1 7.0973 6.4429 -0.1408 42 1 5.6558 6.1282 -1.1367 43 1 5.8466 8.4128 -1.9422 44 1 8.3834 6.9266 -2.1549 45 1 6.9422 6.6107 -3.1507 46 1 9.0024 7.2758 -4.7549 47 1 10.8679 7.4526 -7.5170 48 1 2.2328 4.4097 -1.1556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732681600.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:37 Heat of formation + Delta-G solvation = -6.966863 kcal Electronic energy + Delta-G solvation = -27861.962219 eV Core-core repulsion = 23760.187651 eV Total energy + Delta-G solvation = -4101.774567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.74481 -39.61649 -38.28039 -36.81527 -35.02268 -34.90561 -33.79926 -31.93500 -31.19753 -30.94935 -29.80501 -29.08847 -26.20539 -24.69177 -24.10474 -23.41188 -22.11320 -21.25227 -20.83565 -20.30076 -19.20805 -18.26723 -17.85655 -16.50808 -16.36842 -16.15943 -16.04414 -15.46695 -15.07807 -14.81631 -14.63912 -14.54801 -14.33833 -14.02176 -13.82670 -13.68316 -13.56926 -13.20273 -13.08280 -12.97375 -12.67650 -12.58113 -12.21538 -12.16580 -12.04118 -11.65996 -11.49668 -11.34340 -11.26688 -11.08185 -11.02598 -10.89726 -10.33049 -10.20787 -10.00244 -10.00061 -9.50373 -9.31195 -8.97528 -8.43373 -8.02645 -7.93850 -6.40143 -3.80897 1.19952 1.85132 1.89580 3.08923 3.17589 3.27986 3.28199 3.35430 3.91347 3.92980 4.07853 4.28678 4.31898 4.36024 4.45984 4.61049 4.75343 4.85248 4.90459 4.95370 5.03185 5.06235 5.21446 5.22751 5.28085 5.31195 5.35302 5.43599 5.53864 5.58110 5.60416 5.79908 5.84073 5.97685 5.99697 6.02624 6.06069 6.13578 6.29768 6.40299 6.41667 7.13977 7.24553 7.40017 7.56970 7.69951 8.08430 8.13771 8.63143 9.19656 9.56378 10.07809 10.77716 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012548 B = 0.001868 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.884358 B =14982.941920 C =16671.439242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 N -0.361 5.361 4 C 0.127 3.873 5 C -0.295 4.295 6 C 0.597 3.403 7 O -0.552 6.552 8 N -0.720 5.720 9 C 0.145 3.855 10 H 0.091 0.909 11 C -0.161 4.161 12 C -0.125 4.125 13 C 0.059 3.941 14 N -0.670 5.670 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.565 5.565 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.081 3.919 28 N -0.294 5.294 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.187 0.813 35 H 0.398 0.602 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.026 0.974 43 H 0.348 0.652 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.845 -16.232 16.536 29.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.004 3.996 3 N -0.140 5.140 4 C -0.024 4.024 5 C -0.310 4.310 6 C 0.385 3.615 7 O -0.431 6.431 8 N -0.371 5.371 9 C 0.040 3.960 10 H 0.109 0.891 11 C -0.220 4.220 12 C -0.163 4.163 13 C -0.070 4.070 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.227 3.773 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.107 4.107 28 N -0.113 5.113 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.204 0.796 35 H 0.232 0.768 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.167 0.833 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -18.861 -16.285 16.769 30.036 hybrid contribution 0.225 -0.018 -1.177 1.199 sum -18.636 -16.303 15.592 29.261 Atomic orbital electron populations 1.22060 0.93321 1.03204 1.03795 1.21856 0.96495 0.76800 1.04412 1.48673 1.34278 1.10667 1.20372 1.22998 0.91500 0.93582 0.94336 1.20276 1.11735 0.95543 1.03457 1.17206 0.80042 0.81207 0.83058 1.90766 1.46990 1.78959 1.26397 1.45893 1.48904 1.10590 1.31762 1.20973 0.93580 0.89025 0.92374 0.89137 1.22158 1.00646 1.00927 0.98257 1.21885 1.00005 0.97734 0.96687 1.21966 0.98283 0.92975 0.93797 1.60052 1.24299 1.27395 1.18437 1.21661 0.98048 0.95831 0.92626 1.19829 0.84170 0.89652 0.83682 1.90518 1.59096 1.22073 1.75066 1.41879 1.43824 1.11449 1.22985 1.19762 1.27497 0.91646 1.03910 0.87850 1.25270 0.97076 0.97345 0.98353 1.69625 1.35852 1.18306 1.30561 0.85794 0.78232 0.80744 0.79535 1.19207 1.20751 1.20801 1.24084 0.94115 0.97520 0.94950 1.77164 1.23844 0.97084 1.13220 0.90381 0.91960 0.90866 0.89135 0.88166 0.79576 0.76771 0.92471 0.92188 0.91419 0.91331 0.89109 0.91094 0.95550 0.83304 0.89655 0.93981 0.77466 0.91945 0.79417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.65 10.09 37.16 0.37 -0.28 16 2 C 0.12 0.52 7.21 -4.04 -0.03 0.49 16 3 N -0.36 -2.80 3.65 -60.81 -0.22 -3.02 16 4 C 0.13 1.04 11.25 -16.56 -0.19 0.86 16 5 C -0.30 -2.82 6.13 -105.07 -0.64 -3.46 16 6 C 0.60 6.57 7.78 -12.52 -0.10 6.48 16 7 O -0.55 -7.87 16.56 5.28 0.09 -7.78 16 8 N -0.72 -6.41 4.52 -54.88 -0.25 -6.66 16 9 C 0.15 1.36 2.57 -67.93 -0.17 1.18 16 10 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 11 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 12 C -0.12 -1.20 5.01 -26.73 -0.13 -1.33 16 13 C 0.06 0.71 5.57 -3.83 -0.02 0.69 16 14 N -0.67 -10.68 6.13 -115.06 -0.70 -11.39 16 15 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 16 C 0.44 10.54 7.82 -10.99 -0.09 10.46 16 17 O -0.58 -15.96 15.78 5.55 0.09 -15.87 16 18 N -0.56 -14.50 5.29 -10.96 -0.06 -14.56 16 19 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 20 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 23 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 C 0.08 0.70 11.50 -16.98 -0.20 0.51 16 28 N -0.29 -2.85 12.33 30.86 0.38 -2.47 16 29 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.16 8.06 -51.93 -0.42 -0.26 16 34 H 0.19 1.11 8.06 -52.48 -0.42 0.69 16 35 H 0.40 2.73 7.56 -40.82 -0.31 2.42 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.03 0.30 7.75 -51.93 -0.40 -0.10 16 43 H 0.35 5.61 8.43 -39.29 -0.33 5.27 16 44 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 46 H 0.39 9.65 7.90 -40.82 -0.32 9.32 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.19 1.09 7.50 -52.49 -0.39 0.69 16 LS Contribution 409.95 15.07 6.18 6.18 Total: -1.00 -35.95 409.95 -7.49 -43.43 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -7.58 Total: 12.66 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -1.11 Total: 7.36 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: -0.13 Total: -62.16 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: 0.17 Total: -23.65 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.95 -7.49 -43.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732681600.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.467 kcal (2) G-P(sol) polarization free energy of solvation -35.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds