Wall clock time and date at job start Tue Mar 31 2020 20:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.46726 * 2 1 4 4 C 1.34259 * 125.75336 * 125.00203 * 3 2 1 5 5 C 1.38045 * 107.41939 * 179.97438 * 4 3 2 6 6 C 1.47428 * 126.41432 * 180.02562 * 5 4 3 7 7 O 1.21602 * 120.00252 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99946 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99997 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47840 * 34.99187 * 9 8 6 11 11 C 1.52999 * 109.46779 * 274.99167 * 9 8 6 12 12 C 1.53007 * 109.47145 * 154.99629 * 9 8 6 13 13 C 1.53000 * 109.46914 * 294.99496 * 12 9 8 14 14 N 1.46894 * 109.46894 * 179.97438 * 13 12 9 15 15 C 1.46904 * 111.00197 * 179.97438 * 14 13 12 16 16 C 1.50693 * 109.47348 * 179.97438 * 15 14 13 17 17 O 1.21292 * 120.00196 * 0.02562 * 16 15 14 18 18 N 1.34782 * 119.99822 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99810 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00161 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00114 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99561 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00199 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47177 * 0.02562 * 23 21 19 25 25 H 1.48509 * 109.46745 * 120.00363 * 23 21 19 26 26 H 1.48502 * 109.47379 * 240.00002 * 23 21 19 27 27 C 1.41290 * 107.17003 * 359.97438 * 5 4 3 28 28 N 1.30448 * 108.01917 * 0.02562 * 27 5 4 29 29 H 1.09001 * 109.47115 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47736 * 299.99675 * 1 2 3 31 31 H 1.09000 * 109.47469 * 60.00346 * 1 2 3 32 32 H 1.09003 * 109.47179 * 239.99962 * 2 1 3 33 33 H 1.08999 * 109.46628 * 120.00021 * 2 1 3 34 34 H 1.08005 * 126.28789 * 0.24258 * 4 3 2 35 35 H 0.97000 * 120.00137 * 359.97438 * 8 6 5 36 36 H 1.09003 * 109.47378 * 300.00194 * 11 9 8 37 37 H 1.09000 * 109.47232 * 60.00088 * 11 9 8 38 38 H 1.09001 * 109.47377 * 179.97438 * 11 9 8 39 39 H 1.09000 * 109.47106 * 55.00102 * 12 9 8 40 40 H 1.09001 * 109.46834 * 174.99549 * 12 9 8 41 41 H 1.09003 * 109.47006 * 300.00157 * 13 12 9 42 42 H 1.09000 * 109.46804 * 60.00381 * 13 12 9 43 43 H 1.00898 * 111.00310 * 303.95626 * 14 13 12 44 44 H 1.08995 * 109.47540 * 300.00795 * 15 14 13 45 45 H 1.09008 * 109.46260 * 60.00113 * 15 14 13 46 46 H 0.96997 * 119.99808 * 0.02562 * 18 16 15 47 47 H 0.97007 * 120.00009 * 179.97438 * 22 21 19 48 48 H 1.07999 * 125.99006 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8689 1.9125 0.8925 5 6 3.0713 3.2308 0.5365 6 6 3.9333 4.2031 1.2331 7 8 4.5508 3.8668 2.2251 8 7 4.0360 5.4649 0.7709 9 6 4.8930 6.4309 1.4627 10 1 5.7705 5.9199 1.8588 11 6 4.1138 7.0718 2.6129 12 6 5.3355 7.5163 0.4792 13 6 6.2193 6.8938 -0.6034 14 7 6.6436 7.9358 -1.5480 15 6 7.4965 7.3737 -2.6038 16 6 7.9105 8.4695 -3.5517 17 8 7.5327 9.6070 -3.3659 18 7 8.7006 8.1855 -4.6061 19 6 9.0777 9.1826 -5.4683 20 1 8.7420 10.1956 -5.3023 21 6 9.8918 8.8898 -6.5556 22 7 10.2998 7.6572 -6.7577 23 14 10.4050 10.2481 -7.7307 24 1 9.8164 11.5366 -7.2852 25 1 11.8859 10.3588 -7.7428 26 1 9.9213 9.9289 -9.0979 27 6 2.2985 3.4736 -0.6212 28 7 1.6774 2.3690 -0.9307 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3165 1.4012 1.7320 35 1 3.5431 5.7333 -0.0203 36 1 3.2362 7.5829 2.2169 37 1 3.7985 6.2986 3.3135 38 1 4.7514 7.7902 3.1280 39 1 4.4575 7.9673 0.0168 40 1 5.8989 8.2820 1.0125 41 1 7.0973 6.4429 -0.1408 42 1 5.6558 6.1282 -1.1367 43 1 5.8466 8.4128 -1.9422 44 1 8.3834 6.9266 -2.1549 45 1 6.9422 6.6107 -3.1507 46 1 9.0024 7.2758 -4.7549 47 1 10.8679 7.4526 -7.5170 48 1 2.2328 4.4097 -1.1556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732681600.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:36 Heat of formation + Delta-G solvation = -34.553844 kcal Electronic energy + Delta-G solvation = -27863.158480 eV Core-core repulsion = 23760.187651 eV Total energy + Delta-G solvation = -4102.970829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.36743 -40.45234 -40.11285 -37.84556 -36.24329 -35.66800 -35.45412 -33.28273 -32.74656 -31.53718 -30.60511 -29.95076 -27.76895 -25.83296 -25.09594 -24.15920 -23.11586 -21.95308 -21.52472 -21.04662 -21.00752 -19.90331 -18.89269 -17.82630 -17.37406 -17.02067 -16.87736 -16.58920 -16.45716 -15.95881 -15.77676 -15.50165 -15.35757 -15.14393 -15.09785 -14.79551 -14.57115 -14.22960 -13.82011 -13.75627 -13.55777 -13.47090 -13.39067 -13.16654 -12.99919 -12.91221 -12.76564 -12.46459 -12.40661 -12.21462 -12.11488 -12.02538 -11.86479 -11.73514 -11.50990 -10.85316 -10.60176 -10.35597 -10.10947 -10.01468 -9.62850 -9.29281 -8.46622 -5.95481 0.55510 1.17891 1.37149 1.40490 1.42398 1.56910 2.05155 2.29535 2.36190 2.51200 2.90987 3.20670 3.46351 3.52274 3.78791 3.92566 4.00694 4.05804 4.08989 4.15411 4.25638 4.32856 4.34556 4.41743 4.47627 4.50539 4.56204 4.64568 4.71887 4.73395 4.79325 4.87197 4.89527 5.01126 5.16636 5.20062 5.24551 5.37417 5.41485 5.43456 5.64908 5.88877 5.89929 6.11301 6.46243 6.51113 6.60014 6.68980 7.12657 7.35712 7.56271 8.11254 8.71056 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012548 B = 0.001868 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.884358 B =14982.941920 C =16671.439242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.115 3.885 3 N -0.358 5.358 4 C 0.130 3.870 5 C -0.317 4.317 6 C 0.597 3.403 7 O -0.591 6.591 8 N -0.711 5.711 9 C 0.151 3.849 10 H 0.072 0.928 11 C -0.156 4.156 12 C -0.113 4.113 13 C 0.063 3.937 14 N -0.682 5.682 15 C 0.065 3.935 16 C 0.438 3.562 17 O -0.622 6.622 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.080 0.920 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.270 1.270 27 C 0.083 3.917 28 N -0.323 5.323 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.130 0.870 34 H 0.206 0.794 35 H 0.409 0.591 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.039 0.961 43 H 0.347 0.653 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.429 -17.080 16.482 30.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.004 4.004 3 N -0.137 5.137 4 C -0.023 4.023 5 C -0.332 4.332 6 C 0.386 3.614 7 O -0.473 6.473 8 N -0.362 5.362 9 C 0.046 3.954 10 H 0.090 0.910 11 C -0.214 4.214 12 C -0.151 4.151 13 C -0.066 4.066 14 N -0.315 5.315 15 C -0.068 4.068 16 C 0.226 3.774 17 O -0.508 6.508 18 N -0.212 5.212 19 C -0.463 4.463 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.196 1.196 27 C -0.105 4.105 28 N -0.143 5.143 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.148 0.852 34 H 0.223 0.777 35 H 0.246 0.754 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.057 0.943 43 H 0.166 0.834 44 H 0.117 0.883 45 H 0.083 0.917 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -19.471 -17.162 16.697 30.861 hybrid contribution 0.364 0.181 -1.115 1.187 sum -19.107 -16.981 15.582 29.937 Atomic orbital electron populations 1.22016 0.93195 1.04244 1.02359 1.22236 0.96630 0.75338 1.06226 1.48982 1.33698 1.11423 1.19584 1.23363 0.90980 0.93451 0.94535 1.20293 1.12641 0.96007 1.04293 1.17421 0.79682 0.81757 0.82579 1.90741 1.48738 1.79695 1.28152 1.45809 1.48473 1.09989 1.31897 1.20860 0.93213 0.88764 0.92569 0.90958 1.22099 1.01097 1.00613 0.97612 1.21770 1.00014 0.97455 0.95888 1.22010 0.98682 0.92418 0.93496 1.60045 1.24436 1.28873 1.18110 1.21514 0.99316 0.93816 0.92117 1.20873 0.82519 0.90560 0.83470 1.90486 1.60126 1.24278 1.75916 1.41956 1.44551 1.11158 1.23492 1.19726 1.29360 0.91475 1.05737 0.90206 1.26069 0.96382 0.99707 0.99269 1.69685 1.35839 1.19575 1.31133 0.84848 0.78130 0.77639 0.77573 1.19695 1.19677 1.19566 1.24441 0.93291 0.98141 0.94607 1.77118 1.24848 0.97886 1.14483 0.88104 0.92697 0.92888 0.88495 0.85208 0.77730 0.75409 0.91284 0.93640 0.90609 0.89866 0.89427 0.91581 0.94274 0.83446 0.88334 0.91688 0.77032 0.91317 0.77309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 10.09 71.98 0.73 -0.34 16 2 C 0.11 0.76 7.21 86.38 0.62 1.38 16 3 N -0.36 -5.15 3.65 -346.30 -1.26 -6.41 16 4 C 0.13 1.98 11.25 84.28 0.95 2.93 16 5 C -0.32 -5.79 6.13 -20.15 -0.12 -5.92 16 6 C 0.60 12.79 7.78 86.66 0.67 13.46 16 7 O -0.59 -16.86 16.56 -4.04 -0.07 -16.93 16 8 N -0.71 -11.76 4.52 -445.81 -2.02 -13.78 16 9 C 0.15 2.65 2.57 44.99 0.12 2.76 16 10 H 0.07 1.58 7.58 -2.39 -0.02 1.56 16 11 C -0.16 -2.48 9.48 71.98 0.68 -1.79 16 12 C -0.11 -1.97 5.01 30.60 0.15 -1.82 16 13 C 0.06 1.39 5.57 86.30 0.48 1.87 16 14 N -0.68 -20.82 6.13 -517.94 -3.17 -23.99 16 15 C 0.06 2.24 6.17 85.55 0.53 2.77 16 16 C 0.44 21.00 7.82 87.65 0.69 21.69 16 17 O -0.62 -34.50 15.78 -3.07 -0.05 -34.55 16 18 N -0.57 -29.80 5.29 -306.98 -1.62 -31.42 16 19 C -0.33 -19.10 9.68 84.04 0.81 -18.29 16 20 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 21 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 22 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 23 Si 0.99 43.16 29.55 68.60 2.03 45.19 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 C 0.08 1.35 11.50 85.65 0.99 2.33 16 28 N -0.32 -6.03 12.33 -56.27 -0.69 -6.72 16 29 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.13 0.08 8.06 -2.39 -0.02 0.06 16 34 H 0.21 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.41 4.85 7.56 -92.71 -0.70 4.15 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.04 0.79 7.75 -2.39 -0.02 0.77 16 43 H 0.35 10.74 8.43 -89.70 -0.76 9.98 16 44 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 45 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 46 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16 47 H 0.28 14.08 8.31 -92.70 -0.77 13.30 16 48 H 0.21 2.09 7.50 -2.91 -0.02 2.07 16 Total: -1.00 -78.33 409.95 -0.01 -78.34 By element: Atomic # 1 Polarization: 40.60 SS G_CDS: -1.19 Total: 39.41 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 7.76 Total: 20.71 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -8.49 Total: -132.17 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.12 Total: -51.48 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -78.33 -0.01 -78.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732681600.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.789 kcal (2) G-P(sol) polarization free energy of solvation -78.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds