Wall clock time and date at job start Tue Mar 31 2020 20:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46929 * 2 1 4 4 C 1.34257 * 125.75897 * 125.00224 * 3 2 1 5 5 C 1.38037 * 107.42081 * 179.97438 * 4 3 2 6 6 C 1.47428 * 126.41638 * 179.97438 * 5 4 3 7 7 O 1.21599 * 119.99989 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00019 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99972 * 180.02562 * 8 6 5 10 10 H 1.09006 * 109.47285 * 324.99710 * 9 8 6 11 11 C 1.53001 * 109.47376 * 84.99687 * 9 8 6 12 12 C 1.53005 * 109.47158 * 204.99803 * 9 8 6 13 13 C 1.52999 * 109.46781 * 64.99841 * 12 9 8 14 14 N 1.46906 * 109.46666 * 179.97438 * 13 12 9 15 15 C 1.46900 * 110.99703 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47271 * 180.02562 * 15 14 13 17 17 O 1.21293 * 119.99744 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00510 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00435 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99946 * 359.97438 * 19 18 16 21 21 C 1.38944 * 120.00193 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99929 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00116 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47111 * 59.99748 * 23 21 19 25 25 H 1.48496 * 109.47179 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46817 * 299.99780 * 23 21 19 27 27 C 1.41295 * 107.17157 * 359.97438 * 5 4 3 28 28 N 1.30444 * 108.01985 * 0.02562 * 27 5 4 29 29 H 1.09005 * 109.46903 * 60.00636 * 1 2 3 30 30 H 1.08997 * 109.47112 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47160 * 300.00407 * 1 2 3 32 32 H 1.09000 * 109.47160 * 239.99593 * 2 1 3 33 33 H 1.09005 * 109.46903 * 119.99364 * 2 1 3 34 34 H 1.08002 * 126.28642 * 359.97438 * 4 3 2 35 35 H 0.96996 * 120.00557 * 359.97438 * 8 6 5 36 36 H 1.09008 * 109.46973 * 60.00325 * 11 9 8 37 37 H 1.09001 * 109.47030 * 179.97438 * 11 9 8 38 38 H 1.08995 * 109.46920 * 300.00323 * 11 9 8 39 39 H 1.09004 * 109.47197 * 184.99572 * 12 9 8 40 40 H 1.08999 * 109.47229 * 304.99724 * 12 9 8 41 41 H 1.08997 * 109.47611 * 299.99549 * 13 12 9 42 42 H 1.08997 * 109.47264 * 60.00493 * 13 12 9 43 43 H 1.00897 * 111.00485 * 303.95207 * 14 13 12 44 44 H 1.09004 * 109.47482 * 299.99788 * 15 14 13 45 45 H 1.08996 * 109.47432 * 60.00200 * 15 14 13 46 46 H 0.97001 * 119.99856 * 359.97438 * 18 16 15 47 47 H 0.97001 * 120.00139 * 179.97438 * 22 21 19 48 48 H 1.08002 * 125.98990 * 179.73424 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8690 1.9127 0.8924 5 6 3.0713 3.2309 0.5363 6 6 3.9325 4.2035 1.2334 7 8 4.5493 3.8675 2.2261 8 7 4.0361 5.4650 0.7705 9 6 4.8923 6.4313 1.4628 10 1 4.8586 6.2431 2.5360 11 6 6.3316 6.2863 0.9646 12 6 4.3945 7.8498 1.1779 13 6 3.0026 8.0335 1.7861 14 7 2.5249 9.3956 1.5131 15 6 1.1884 9.6090 2.0841 16 6 0.7323 11.0136 1.7841 17 8 1.4503 11.7633 1.1566 18 7 -0.4729 11.4372 2.2137 19 6 -0.8880 12.7148 1.9402 20 1 -0.2491 13.3822 1.3808 21 6 -2.1307 13.1513 2.3827 22 7 -2.9084 12.3392 3.0629 23 14 -2.6960 14.8924 2.0107 24 1 -2.7482 15.0923 0.5402 25 1 -4.0473 15.1080 2.5874 26 1 -1.7420 15.8608 2.6084 27 6 2.2985 3.4736 -0.6214 28 7 1.6774 2.3690 -0.9308 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.3134 1.4024 1.7342 35 1 3.5444 5.7329 -0.0215 36 1 6.3653 6.4746 -0.1086 37 1 6.9685 7.0056 1.4795 38 1 6.6862 5.2758 1.1676 39 1 5.0819 8.5716 1.6191 40 1 4.3440 8.0076 0.1006 41 1 2.3151 7.3118 1.3450 42 1 3.0531 7.8757 2.8635 43 1 3.1783 10.0836 1.8562 44 1 0.4879 8.8984 1.6451 45 1 1.2266 9.4619 3.1634 46 1 -1.0469 10.8377 2.7158 47 1 -3.7758 12.6440 3.3721 48 1 2.2300 4.4108 -1.1538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732681601.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:40 Heat of formation + Delta-G solvation = -7.076945 kcal Electronic energy + Delta-G solvation = -27887.386404 eV Core-core repulsion = 23785.607063 eV Total energy + Delta-G solvation = -4101.779341 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.71616 -39.59733 -38.27764 -36.80511 -34.99540 -34.90058 -33.79776 -31.91668 -31.19645 -30.91862 -29.78130 -29.08226 -26.20466 -24.66299 -24.09580 -23.38247 -22.11967 -21.22126 -20.81102 -20.27877 -19.20803 -18.24699 -17.84952 -16.54458 -16.32679 -16.08061 -16.04218 -15.49111 -15.14117 -14.74948 -14.61493 -14.38727 -14.31070 -14.14008 -13.78686 -13.66008 -13.58682 -13.18480 -13.05857 -12.93411 -12.67744 -12.57827 -12.23176 -12.18419 -12.00532 -11.62886 -11.47825 -11.32247 -11.19476 -11.16621 -10.99946 -10.85873 -10.42925 -10.19578 -9.98491 -9.97289 -9.48248 -9.28486 -8.94548 -8.44004 -8.03306 -7.93872 -6.39790 -3.80695 1.22232 1.88121 1.92566 3.11068 3.21529 3.26981 3.30342 3.31474 3.93130 3.94174 4.07878 4.28538 4.34594 4.39250 4.49895 4.62792 4.78250 4.88796 4.92206 4.98970 5.00802 5.09939 5.16757 5.26508 5.26860 5.35837 5.37933 5.44012 5.58147 5.59880 5.65160 5.73654 5.84413 5.97811 6.00291 6.04350 6.06149 6.14600 6.29756 6.42338 6.43075 7.17068 7.24330 7.43113 7.56707 7.69465 8.08098 8.15862 8.63351 9.19606 9.56424 10.07989 10.77915 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011459 B = 0.001937 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.814161 B =14448.509148 C =16393.021399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.126 3.874 3 N -0.361 5.361 4 C 0.127 3.873 5 C -0.295 4.295 6 C 0.597 3.403 7 O -0.554 6.554 8 N -0.719 5.719 9 C 0.146 3.854 10 H 0.088 0.912 11 C -0.162 4.162 12 C -0.125 4.125 13 C 0.059 3.941 14 N -0.669 5.669 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.082 3.918 28 N -0.294 5.294 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.187 0.813 35 H 0.400 0.600 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.026 0.974 43 H 0.349 0.651 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.475 -26.145 -4.035 28.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.005 3.995 3 N -0.140 5.140 4 C -0.025 4.025 5 C -0.310 4.310 6 C 0.385 3.615 7 O -0.433 6.433 8 N -0.371 5.371 9 C 0.041 3.959 10 H 0.106 0.894 11 C -0.220 4.220 12 C -0.164 4.164 13 C -0.071 4.071 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.106 4.106 28 N -0.113 5.113 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.204 0.796 35 H 0.235 0.765 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.044 0.956 43 H 0.168 0.832 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 11.084 -26.703 -5.111 29.361 hybrid contribution -0.304 1.019 1.315 1.691 sum 10.780 -25.685 -3.796 28.113 Atomic orbital electron populations 1.22069 0.93241 1.03206 1.03968 1.21848 0.96585 0.76788 1.04261 1.48683 1.34210 1.10684 1.20462 1.22985 0.91547 0.93643 0.94284 1.20269 1.11835 0.95449 1.03455 1.17209 0.79956 0.81338 0.82984 1.90761 1.47380 1.78780 1.26369 1.45880 1.48806 1.10550 1.31837 1.20953 0.89507 0.87489 0.97961 0.89368 1.22161 0.95828 1.02459 1.01565 1.21880 0.96719 0.94849 1.02924 1.21966 0.95770 0.91522 0.97821 1.60097 1.03458 1.03143 1.63468 1.21661 0.91876 0.97364 0.97304 1.19823 0.83657 0.88694 0.85186 1.90517 1.55338 1.56713 1.44219 1.41864 1.15242 1.13813 1.49154 1.19656 1.01020 0.89157 1.33083 0.87967 1.25267 0.96003 0.99977 0.96751 1.69606 1.11097 1.36301 1.37365 0.85910 0.77569 0.81855 0.78834 1.19879 1.21003 1.19923 1.24116 0.93910 0.97515 0.95037 1.77172 1.23571 0.97153 1.13411 0.90821 0.90398 0.91828 0.89252 0.88215 0.79623 0.76508 0.92344 0.91564 0.92169 0.90216 0.90180 0.91111 0.95553 0.83238 0.89696 0.93944 0.77461 0.91835 0.79281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 10.09 37.16 0.37 -0.38 16 2 C 0.13 0.54 7.21 -4.04 -0.03 0.51 16 3 N -0.36 -2.86 3.65 -60.81 -0.22 -3.08 16 4 C 0.13 1.05 11.25 -16.56 -0.19 0.87 16 5 C -0.30 -2.86 6.13 -105.07 -0.64 -3.50 16 6 C 0.60 6.65 7.78 -12.52 -0.10 6.55 16 7 O -0.55 -7.93 16.56 5.28 0.09 -7.84 16 8 N -0.72 -6.54 4.52 -54.88 -0.25 -6.79 16 9 C 0.15 1.37 2.57 -67.93 -0.17 1.19 16 10 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 11 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 12 C -0.13 -1.21 5.01 -26.73 -0.13 -1.34 16 13 C 0.06 0.71 5.57 -3.82 -0.02 0.69 16 14 N -0.67 -10.68 6.13 -115.06 -0.70 -11.39 16 15 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 16 C 0.44 10.54 7.82 -10.99 -0.09 10.45 16 17 O -0.58 -15.96 15.78 5.55 0.09 -15.87 16 18 N -0.56 -14.49 5.29 -10.96 -0.06 -14.54 16 19 C -0.30 -8.44 9.68 -14.94 -0.14 -8.58 16 20 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.78 13.05 55.50 0.72 -24.05 16 23 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.08 0.73 11.50 -16.98 -0.20 0.54 16 28 N -0.29 -2.91 12.33 30.86 0.38 -2.53 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.10 0.17 8.06 -51.93 -0.42 -0.24 16 34 H 0.19 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.40 2.91 7.56 -40.82 -0.31 2.60 16 36 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 42 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.35 5.73 8.43 -39.29 -0.33 5.39 16 44 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.19 1.16 7.50 -52.49 -0.39 0.76 16 LS Contribution 409.95 15.07 6.18 6.18 Total: -1.00 -35.77 409.95 -7.49 -43.25 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -7.58 Total: 13.15 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -1.11 Total: 7.32 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -0.13 Total: -62.38 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: 0.17 Total: -23.71 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.77 -7.49 -43.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732681601.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.178 kcal (2) G-P(sol) polarization free energy of solvation -35.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds