Wall clock time and date at job start Tue Mar 31 2020 20:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46929 * 2 1 4 4 C 1.34257 * 125.75897 * 125.00224 * 3 2 1 5 5 C 1.38037 * 107.42081 * 179.97438 * 4 3 2 6 6 C 1.47428 * 126.41638 * 179.97438 * 5 4 3 7 7 O 1.21599 * 119.99989 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00019 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99972 * 180.02562 * 8 6 5 10 10 H 1.09006 * 109.47285 * 324.99710 * 9 8 6 11 11 C 1.53001 * 109.47376 * 84.99687 * 9 8 6 12 12 C 1.53005 * 109.47158 * 204.99803 * 9 8 6 13 13 C 1.52999 * 109.46781 * 64.99841 * 12 9 8 14 14 N 1.46906 * 109.46666 * 179.97438 * 13 12 9 15 15 C 1.46900 * 110.99703 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47271 * 180.02562 * 15 14 13 17 17 O 1.21293 * 119.99744 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00510 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00435 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99946 * 359.97438 * 19 18 16 21 21 C 1.38944 * 120.00193 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99929 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00116 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47111 * 59.99748 * 23 21 19 25 25 H 1.48496 * 109.47179 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46817 * 299.99780 * 23 21 19 27 27 C 1.41295 * 107.17157 * 359.97438 * 5 4 3 28 28 N 1.30444 * 108.01985 * 0.02562 * 27 5 4 29 29 H 1.09005 * 109.46903 * 60.00636 * 1 2 3 30 30 H 1.08997 * 109.47112 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47160 * 300.00407 * 1 2 3 32 32 H 1.09000 * 109.47160 * 239.99593 * 2 1 3 33 33 H 1.09005 * 109.46903 * 119.99364 * 2 1 3 34 34 H 1.08002 * 126.28642 * 359.97438 * 4 3 2 35 35 H 0.96996 * 120.00557 * 359.97438 * 8 6 5 36 36 H 1.09008 * 109.46973 * 60.00325 * 11 9 8 37 37 H 1.09001 * 109.47030 * 179.97438 * 11 9 8 38 38 H 1.08995 * 109.46920 * 300.00323 * 11 9 8 39 39 H 1.09004 * 109.47197 * 184.99572 * 12 9 8 40 40 H 1.08999 * 109.47229 * 304.99724 * 12 9 8 41 41 H 1.08997 * 109.47611 * 299.99549 * 13 12 9 42 42 H 1.08997 * 109.47264 * 60.00493 * 13 12 9 43 43 H 1.00897 * 111.00485 * 303.95207 * 14 13 12 44 44 H 1.09004 * 109.47482 * 299.99788 * 15 14 13 45 45 H 1.08996 * 109.47432 * 60.00200 * 15 14 13 46 46 H 0.97001 * 119.99856 * 359.97438 * 18 16 15 47 47 H 0.97001 * 120.00139 * 179.97438 * 22 21 19 48 48 H 1.08002 * 125.98990 * 179.73424 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8690 1.9127 0.8924 5 6 3.0713 3.2309 0.5363 6 6 3.9325 4.2035 1.2334 7 8 4.5493 3.8675 2.2261 8 7 4.0361 5.4650 0.7705 9 6 4.8923 6.4313 1.4628 10 1 4.8586 6.2431 2.5360 11 6 6.3316 6.2863 0.9646 12 6 4.3945 7.8498 1.1779 13 6 3.0026 8.0335 1.7861 14 7 2.5249 9.3956 1.5131 15 6 1.1884 9.6090 2.0841 16 6 0.7323 11.0136 1.7841 17 8 1.4503 11.7633 1.1566 18 7 -0.4729 11.4372 2.2137 19 6 -0.8880 12.7148 1.9402 20 1 -0.2491 13.3822 1.3808 21 6 -2.1307 13.1513 2.3827 22 7 -2.9084 12.3392 3.0629 23 14 -2.6960 14.8924 2.0107 24 1 -2.7482 15.0923 0.5402 25 1 -4.0473 15.1080 2.5874 26 1 -1.7420 15.8608 2.6084 27 6 2.2985 3.4736 -0.6214 28 7 1.6774 2.3690 -0.9308 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.3134 1.4024 1.7342 35 1 3.5444 5.7329 -0.0215 36 1 6.3653 6.4746 -0.1086 37 1 6.9685 7.0056 1.4795 38 1 6.6862 5.2758 1.1676 39 1 5.0819 8.5716 1.6191 40 1 4.3440 8.0076 0.1006 41 1 2.3151 7.3118 1.3450 42 1 3.0531 7.8757 2.8635 43 1 3.1783 10.0836 1.8562 44 1 0.4879 8.8984 1.6451 45 1 1.2266 9.4619 3.1634 46 1 -1.0469 10.8377 2.7158 47 1 -3.7758 12.6440 3.3721 48 1 2.2300 4.4108 -1.1538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732681601.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:39 Heat of formation + Delta-G solvation = -34.461614 kcal Electronic energy + Delta-G solvation = -27888.573892 eV Core-core repulsion = 23785.607063 eV Total energy + Delta-G solvation = -4102.966829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.35402 -40.44198 -40.11178 -37.83960 -36.24349 -35.66780 -35.44393 -33.28209 -32.73667 -31.52619 -30.60213 -29.94419 -27.76806 -25.83275 -25.08435 -24.14059 -23.12649 -21.92884 -21.51091 -21.06090 -20.98486 -19.90228 -18.88519 -17.83014 -17.36367 -16.99306 -16.88896 -16.60399 -16.43681 -15.96957 -15.83081 -15.41610 -15.36035 -15.15590 -15.03019 -14.68347 -14.65929 -14.27545 -13.84585 -13.74689 -13.56230 -13.47606 -13.35256 -13.17391 -12.98722 -12.90086 -12.76527 -12.46491 -12.43124 -12.18085 -12.11235 -12.06979 -11.86267 -11.71424 -11.49522 -10.84586 -10.58847 -10.34755 -10.09852 -10.01633 -9.61255 -9.32502 -8.46160 -5.95204 0.56564 1.19155 1.40525 1.41934 1.42209 1.53406 2.05377 2.29585 2.37473 2.52180 2.90582 3.20950 3.47263 3.51786 3.80105 3.96387 4.02199 4.06110 4.10049 4.15565 4.18380 4.34049 4.35146 4.42890 4.45642 4.55014 4.55362 4.65560 4.72259 4.73341 4.79699 4.88008 4.91723 4.96683 5.13572 5.21230 5.26512 5.37708 5.41097 5.44611 5.65365 5.89457 5.90215 6.10666 6.42719 6.52383 6.60126 6.70240 7.12535 7.36449 7.56285 8.11275 8.71037 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011459 B = 0.001937 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.814161 B =14448.509148 C =16393.021399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.359 5.359 4 C 0.130 3.870 5 C -0.317 4.317 6 C 0.597 3.403 7 O -0.592 6.592 8 N -0.711 5.711 9 C 0.151 3.849 10 H 0.072 0.928 11 C -0.156 4.156 12 C -0.114 4.114 13 C 0.062 3.938 14 N -0.679 5.679 15 C 0.064 3.936 16 C 0.438 3.562 17 O -0.622 6.622 18 N -0.574 5.574 19 C -0.334 4.334 20 H 0.080 0.920 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.083 3.917 28 N -0.323 5.323 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.130 0.870 34 H 0.206 0.794 35 H 0.410 0.590 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.028 0.972 43 H 0.345 0.655 44 H 0.102 0.898 45 H 0.062 0.938 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.444 -27.090 -4.171 29.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.003 4.003 3 N -0.137 5.137 4 C -0.023 4.023 5 C -0.332 4.332 6 C 0.386 3.614 7 O -0.474 6.474 8 N -0.362 5.362 9 C 0.046 3.954 10 H 0.090 0.910 11 C -0.214 4.214 12 C -0.152 4.152 13 C -0.067 4.067 14 N -0.311 5.311 15 C -0.068 4.068 16 C 0.226 3.774 17 O -0.508 6.508 18 N -0.211 5.211 19 C -0.464 4.464 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.105 4.105 28 N -0.143 5.143 29 H 0.071 0.929 30 H 0.120 0.880 31 H 0.070 0.930 32 H 0.118 0.882 33 H 0.148 0.852 34 H 0.223 0.777 35 H 0.247 0.753 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.047 0.953 43 H 0.163 0.837 44 H 0.120 0.880 45 H 0.080 0.920 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 11.032 -27.678 -5.269 30.257 hybrid contribution -0.277 1.222 1.350 1.842 sum 10.754 -26.456 -3.918 28.826 Atomic orbital electron populations 1.22031 0.93488 1.04224 1.02275 1.22230 0.96387 0.75337 1.06321 1.48992 1.33624 1.11445 1.19661 1.23355 0.91007 0.93473 0.94471 1.20292 1.12730 0.95954 1.04261 1.17415 0.79604 0.81869 0.82504 1.90735 1.49079 1.79499 1.28085 1.45821 1.48477 1.09995 1.31893 1.20865 0.90145 0.87239 0.97153 0.90974 1.22103 0.95170 1.01878 1.02288 1.21777 0.95375 0.95016 1.03028 1.22030 0.97086 0.89332 0.98248 1.60114 1.02537 1.04882 1.63594 1.21524 0.93274 0.93320 0.98720 1.20862 0.82508 0.90646 0.83432 1.90485 1.56174 1.58549 1.45593 1.41945 1.16103 1.13333 1.49729 1.19650 1.01804 0.90345 1.34604 0.90184 1.26072 0.95506 1.03801 0.96057 1.69671 1.11380 1.37795 1.37364 0.84970 0.77528 0.77062 0.78667 1.19648 1.19547 1.19624 1.24449 0.93165 0.98098 0.94747 1.77124 1.24570 0.97954 1.14689 0.92897 0.88041 0.93015 0.88158 0.85220 0.77703 0.75321 0.91358 0.90506 0.93618 0.89526 0.89687 0.90588 0.95344 0.83670 0.87993 0.92029 0.77035 0.91301 0.77354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 10.09 71.98 0.73 -0.55 16 2 C 0.12 0.79 7.21 86.38 0.62 1.41 16 3 N -0.36 -5.26 3.65 -346.29 -1.26 -6.52 16 4 C 0.13 2.02 11.25 84.27 0.95 2.96 16 5 C -0.32 -5.92 6.13 -20.15 -0.12 -6.05 16 6 C 0.60 12.98 7.78 86.66 0.67 13.66 16 7 O -0.59 -16.92 16.56 -4.03 -0.07 -16.99 16 8 N -0.71 -12.17 4.52 -445.79 -2.02 -14.19 16 9 C 0.15 2.65 2.57 44.99 0.12 2.77 16 10 H 0.07 1.55 7.58 -2.38 -0.02 1.53 16 11 C -0.16 -2.47 9.48 71.98 0.68 -1.79 16 12 C -0.11 -1.99 5.01 30.60 0.15 -1.84 16 13 C 0.06 1.38 5.57 86.30 0.48 1.86 16 14 N -0.68 -20.77 6.13 -517.93 -3.17 -23.94 16 15 C 0.06 2.22 6.17 85.56 0.53 2.75 16 16 C 0.44 20.99 7.82 87.66 0.69 21.68 16 17 O -0.62 -34.46 15.78 -3.07 -0.05 -34.51 16 18 N -0.57 -29.78 5.29 -306.99 -1.62 -31.40 16 19 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 20 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 21 C -0.01 -0.79 5.50 84.92 0.47 -0.33 16 22 N -0.92 -50.16 13.05 21.66 0.28 -49.87 16 23 Si 0.99 43.13 29.55 68.60 2.03 45.15 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 C 0.08 1.40 11.50 85.65 0.99 2.39 16 28 N -0.32 -6.20 12.33 -56.27 -0.69 -6.89 16 29 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.13 0.10 8.06 -2.38 -0.02 0.08 16 34 H 0.21 2.20 8.06 -2.91 -0.02 2.17 16 35 H 0.41 5.34 7.56 -92.71 -0.70 4.64 16 36 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.08 1.63 7.75 -2.39 -0.02 1.61 16 42 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.34 11.01 8.43 -89.70 -0.76 10.26 16 44 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 45 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16 47 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 48 H 0.21 2.31 7.50 -2.91 -0.02 2.28 16 Total: -1.00 -77.80 409.95 -0.01 -77.80 By element: Atomic # 1 Polarization: 41.95 SS G_CDS: -1.19 Total: 40.76 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 7.76 Total: 20.60 kcal Atomic # 7 Polarization: -124.33 SS G_CDS: -8.49 Total: -132.81 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -0.12 Total: -51.50 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -77.80 -0.01 -77.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732681601.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.342 kcal (2) G-P(sol) polarization free energy of solvation -77.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds