Wall clock time and date at job start Tue Mar 31 2020 20:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47050 * 2 1 4 4 C 1.53001 * 109.47562 * 120.00207 * 2 1 3 5 5 N 1.46898 * 109.47355 * 175.00119 * 4 2 1 6 6 C 1.46902 * 110.99826 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.46815 * 179.97438 * 6 5 4 8 8 O 1.21300 * 120.00101 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99857 * 179.97438 * 7 6 5 10 10 C 1.37102 * 120.00089 * 179.97438 * 9 7 6 11 11 H 1.08001 * 119.99657 * 0.02562 * 10 9 7 12 12 C 1.38945 * 120.00155 * 180.02562 * 10 9 7 13 13 N 1.31417 * 120.00178 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00155 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47157 * 59.99661 * 14 12 10 16 16 H 1.48497 * 109.47409 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46918 * 299.99981 * 14 12 10 18 18 N 1.46499 * 109.47471 * 240.00547 * 2 1 3 19 19 C 1.34779 * 120.00375 * 84.71823 * 18 2 1 20 20 O 1.21281 * 119.99678 * 0.27669 * 19 18 2 21 21 C 1.50698 * 120.00418 * 180.28035 * 19 18 2 22 22 C 1.53003 * 109.46845 * 296.00979 * 21 19 18 23 23 C 1.53001 * 109.46887 * 56.00730 * 21 19 18 24 24 C 1.50692 * 109.47179 * 176.00713 * 21 19 18 25 25 C 1.34673 * 126.59202 * 246.23188 * 24 21 19 26 26 N 1.34128 * 108.02225 * 179.87662 * 25 24 21 27 27 C 1.30500 * 109.25481 * 0.40102 * 26 25 24 28 28 N 1.35049 * 108.69937 * 359.75150 * 27 26 25 29 29 H 0.96999 * 126.39239 * 179.97438 * 28 27 26 30 30 H 1.08999 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46898 * 299.99703 * 1 2 3 32 32 H 1.09000 * 109.47688 * 59.99557 * 1 2 3 33 33 H 1.08997 * 109.46923 * 295.00310 * 4 2 1 34 34 H 1.09000 * 109.46795 * 54.99661 * 4 2 1 35 35 H 1.00907 * 110.99856 * 56.04528 * 5 4 2 36 36 H 1.09002 * 109.47084 * 299.99988 * 6 5 4 37 37 H 1.08990 * 109.47130 * 60.00138 * 6 5 4 38 38 H 0.97000 * 119.99819 * 0.02562 * 9 7 6 39 39 H 0.96995 * 120.00168 * 180.02562 * 13 12 10 40 40 H 0.97006 * 120.00020 * 265.00547 * 18 2 1 41 41 H 1.09001 * 109.47300 * 59.99920 * 22 21 19 42 42 H 1.08995 * 109.46881 * 179.97438 * 22 21 19 43 43 H 1.08998 * 109.46702 * 299.99760 * 22 21 19 44 44 H 1.08998 * 109.47614 * 60.00391 * 23 21 19 45 45 H 1.09000 * 109.47151 * 180.02562 * 23 21 19 46 46 H 1.09001 * 109.47289 * 300.00099 * 23 21 19 47 47 H 1.07998 * 125.98708 * 0.03013 * 25 24 21 48 48 H 1.08003 * 125.64876 * 179.73611 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5041 -0.8266 1.1903 6 6 4.0303 -1.5159 2.3760 7 6 5.5316 -1.6054 2.2800 8 8 6.1067 -1.1403 1.3185 9 7 6.2354 -2.2013 3.2628 10 6 7.6012 -2.2832 3.1752 11 1 8.1131 -1.8698 2.3188 12 6 8.3267 -2.8981 4.1882 13 7 7.7039 -3.4007 5.2306 14 14 10.1876 -3.0090 4.0692 15 1 10.7614 -1.6413 3.9962 16 1 10.7197 -3.7052 5.2680 17 1 10.5611 -3.7682 2.8488 18 7 2.0184 -0.6905 -1.1962 19 6 2.1418 -0.0195 -2.3586 20 8 1.8532 1.1573 -2.4130 21 6 2.6382 -0.7313 -3.5906 22 6 4.0788 -1.1951 -3.3659 23 6 1.7496 -1.9448 -3.8713 24 6 2.5909 0.2089 -4.7673 25 6 1.8002 0.0984 -5.8519 26 7 2.0608 1.1347 -6.6626 27 6 2.9888 1.8785 -6.1256 28 7 3.3475 1.3361 -4.9420 29 1 4.0166 1.6808 -4.3301 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.7517 -0.1584 2.1369 34 1 1.6054 -1.7198 1.2951 35 1 3.9280 0.0827 1.0823 36 1 3.7557 -0.9589 3.2719 37 1 3.6096 -2.5199 2.4293 38 1 5.7756 -2.5729 4.0318 39 1 8.2104 -3.8295 5.9379 40 1 2.2490 -1.6317 -1.1527 41 1 4.1130 -1.8752 -2.5147 42 1 4.4377 -1.7104 -4.2568 43 1 4.7117 -0.3306 -3.1659 44 1 0.7233 -1.6144 -4.0314 45 1 2.1089 -2.4599 -4.7621 46 1 1.7838 -2.6248 -3.0201 47 1 1.0807 -0.6857 -6.0354 48 1 3.4019 2.7786 -6.5565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733020000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:03 Heat of formation + Delta-G solvation = -24.815319 kcal Electronic energy + Delta-G solvation = -29372.529756 eV Core-core repulsion = 25269.981222 eV Total energy + Delta-G solvation = -4102.548534 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.28073 -40.06063 -38.38853 -36.85455 -35.51861 -34.34781 -33.69629 -32.49068 -31.30629 -30.89541 -28.71418 -27.67263 -27.51800 -25.14001 -24.22536 -23.28506 -22.16920 -21.32409 -20.80786 -19.88175 -19.31972 -18.26390 -17.92998 -16.82766 -16.71429 -15.94200 -15.34208 -15.25762 -14.83235 -14.64110 -14.54763 -14.42010 -14.25321 -14.08504 -13.95827 -13.60101 -13.56439 -13.29966 -12.96736 -12.65218 -12.53347 -12.40515 -12.35508 -12.06165 -11.86496 -11.83937 -11.60828 -11.54668 -11.44750 -11.07349 -11.00174 -10.49500 -10.27543 -10.14406 -10.03638 -9.76849 -9.56221 -9.10958 -8.56389 -8.47119 -8.18682 -8.02834 -6.47820 -3.88991 1.93401 2.56399 2.98405 3.05311 3.15096 3.21513 3.23424 3.25507 3.83474 3.98682 4.22089 4.26069 4.52724 4.61007 4.65969 4.71320 4.83025 4.99802 5.04394 5.17164 5.22872 5.24930 5.33253 5.38817 5.40503 5.47832 5.51146 5.51325 5.53728 5.65428 5.70826 5.78256 5.84698 5.88033 5.98590 5.99944 6.14799 6.18096 6.43428 6.62034 7.05893 7.28047 7.47754 7.48861 7.50865 7.96771 7.99311 8.16942 8.54266 9.11349 9.47394 9.98446 10.69703 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014416 B = 0.002377 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.765224 B =11774.545870 C =13065.268277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.085 0.915 4 C 0.047 3.953 5 N -0.666 5.666 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.301 4.301 11 H 0.102 0.898 12 C 0.023 3.977 13 N -0.901 5.901 14 Si 0.931 3.069 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.273 1.273 18 N -0.702 5.702 19 C 0.525 3.475 20 O -0.543 6.543 21 C -0.006 4.006 22 C -0.142 4.142 23 C -0.138 4.138 24 C 0.012 3.988 25 C -0.024 4.024 26 N -0.497 5.497 27 C 0.182 3.818 28 N -0.551 5.551 29 H 0.420 0.580 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.350 0.650 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.406 0.594 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.167 0.833 48 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.119 3.294 -12.835 19.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.103 0.897 4 C -0.083 4.083 5 N -0.299 5.299 6 C -0.082 4.082 7 C 0.225 3.775 8 O -0.468 6.468 9 N -0.199 5.199 10 C -0.430 4.430 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.542 5.542 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.199 1.199 18 N -0.353 5.353 19 C 0.310 3.690 20 O -0.420 6.420 21 C -0.011 4.011 22 C -0.199 4.199 23 C -0.196 4.196 24 C -0.105 4.105 25 C -0.172 4.172 26 N -0.216 5.216 27 C -0.102 4.102 28 N -0.152 5.152 29 H 0.257 0.743 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.169 0.831 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.241 0.759 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.184 0.816 48 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -14.265 3.930 -14.491 20.710 hybrid contribution 1.396 -0.003 2.442 2.812 sum -12.869 3.927 -12.049 18.062 Atomic orbital electron populations 1.22135 0.94943 1.02284 1.02624 1.20939 0.93624 0.97395 0.83994 0.89734 1.22318 0.89542 1.00746 0.95666 1.60068 1.03010 1.26790 1.39989 1.21680 0.95344 0.99853 0.91364 1.19785 0.87973 0.84684 0.85061 1.90523 1.71111 1.51953 1.33243 1.41863 1.07417 1.50839 1.19783 1.19639 0.81504 1.35324 1.06557 0.88004 1.25266 1.00726 0.96689 0.95203 1.69599 1.36854 1.38445 1.09338 0.85920 0.82071 0.78613 0.77637 1.19916 1.20933 1.19852 1.45792 1.66416 1.14489 1.08575 1.20354 0.77261 0.87111 0.84309 1.90693 1.50227 1.15966 1.85128 1.19236 0.98583 0.94026 0.89213 1.21902 0.92298 1.02291 1.03449 1.21855 0.99228 0.95189 1.03307 1.20493 0.99485 0.91703 0.98842 1.21996 1.02971 0.99916 0.92333 1.70257 1.14891 1.05450 1.30974 1.24880 0.98383 1.01387 0.85556 1.43124 1.32304 1.20816 1.18918 0.74262 0.92227 0.91630 0.91914 0.93875 0.90386 0.83068 0.93849 0.89576 0.77465 0.91764 0.75879 0.90242 0.91084 0.92261 0.91474 0.90613 0.91064 0.81620 0.77806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.48 37.16 0.35 -1.05 16 2 C 0.15 1.49 2.81 -67.93 -0.19 1.30 16 3 H 0.08 1.04 7.58 -51.93 -0.39 0.64 16 4 C 0.05 0.49 5.24 -3.82 -0.02 0.47 16 5 N -0.67 -9.36 5.85 -115.06 -0.67 -10.03 16 6 C 0.05 0.80 6.17 -4.97 -0.03 0.77 16 7 C 0.44 9.80 7.82 -10.98 -0.09 9.72 16 8 O -0.58 -15.05 15.78 5.54 0.09 -14.96 16 9 N -0.56 -13.72 5.29 -10.96 -0.06 -13.77 16 10 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 11 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -23.95 13.05 55.50 0.72 -23.23 16 14 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 N -0.70 -7.20 4.61 -53.81 -0.25 -7.44 16 19 C 0.52 6.22 6.44 -10.99 -0.07 6.15 16 20 O -0.54 -8.31 15.59 5.56 0.09 -8.22 16 21 C -0.01 -0.06 0.85 -156.81 -0.13 -0.19 16 22 C -0.14 -1.38 8.39 37.16 0.31 -1.07 16 23 C -0.14 -1.01 7.31 37.16 0.27 -0.73 16 24 C 0.01 0.14 4.96 -81.61 -0.40 -0.27 16 25 C -0.02 -0.28 10.87 -17.81 -0.19 -0.48 16 26 N -0.50 -6.46 11.25 -14.66 -0.16 -6.63 16 27 C 0.18 1.90 13.04 -90.37 -1.18 0.73 16 28 N -0.55 -5.78 5.99 -10.30 -0.06 -5.84 16 29 H 0.42 3.81 8.96 -40.82 -0.37 3.44 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.35 5.46 8.43 -39.29 -0.33 5.13 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 39 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.41 3.73 7.48 -40.82 -0.31 3.43 16 41 H 0.08 0.79 7.84 -51.93 -0.41 0.38 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.49 7.74 -51.93 -0.40 0.09 16 45 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 46 H 0.07 0.43 7.35 -51.93 -0.38 0.05 16 47 H 0.17 1.63 7.29 -52.49 -0.38 1.24 16 48 H 0.21 1.33 8.06 -52.48 -0.42 0.90 16 LS Contribution 402.34 15.07 6.06 6.06 Total: -1.00 -34.28 402.34 -8.33 -42.61 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -7.45 Total: 18.33 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -1.61 Total: 7.54 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: -0.48 Total: -66.94 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.17 Total: -23.18 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.28 -8.33 -42.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733020000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.796 kcal (2) G-P(sol) polarization free energy of solvation -34.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds