Wall clock time and date at job start Tue Mar 31 2020 20:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47050 * 2 1 4 4 C 1.53001 * 109.47562 * 120.00207 * 2 1 3 5 5 N 1.46898 * 109.47355 * 175.00119 * 4 2 1 6 6 C 1.46902 * 110.99826 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.46815 * 179.97438 * 6 5 4 8 8 O 1.21300 * 120.00101 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99857 * 179.97438 * 7 6 5 10 10 C 1.37102 * 120.00089 * 179.97438 * 9 7 6 11 11 H 1.08001 * 119.99657 * 0.02562 * 10 9 7 12 12 C 1.38945 * 120.00155 * 180.02562 * 10 9 7 13 13 N 1.31417 * 120.00178 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00155 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47157 * 59.99661 * 14 12 10 16 16 H 1.48497 * 109.47409 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46918 * 299.99981 * 14 12 10 18 18 N 1.46499 * 109.47471 * 240.00547 * 2 1 3 19 19 C 1.34779 * 120.00375 * 84.71823 * 18 2 1 20 20 O 1.21281 * 119.99678 * 0.27669 * 19 18 2 21 21 C 1.50698 * 120.00418 * 180.28035 * 19 18 2 22 22 C 1.53003 * 109.46845 * 296.00979 * 21 19 18 23 23 C 1.53001 * 109.46887 * 56.00730 * 21 19 18 24 24 C 1.50692 * 109.47179 * 176.00713 * 21 19 18 25 25 C 1.34673 * 126.59202 * 246.23188 * 24 21 19 26 26 N 1.34128 * 108.02225 * 179.87662 * 25 24 21 27 27 C 1.30500 * 109.25481 * 0.40102 * 26 25 24 28 28 N 1.35049 * 108.69937 * 359.75150 * 27 26 25 29 29 H 0.96999 * 126.39239 * 179.97438 * 28 27 26 30 30 H 1.08999 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46898 * 299.99703 * 1 2 3 32 32 H 1.09000 * 109.47688 * 59.99557 * 1 2 3 33 33 H 1.08997 * 109.46923 * 295.00310 * 4 2 1 34 34 H 1.09000 * 109.46795 * 54.99661 * 4 2 1 35 35 H 1.00907 * 110.99856 * 56.04528 * 5 4 2 36 36 H 1.09002 * 109.47084 * 299.99988 * 6 5 4 37 37 H 1.08990 * 109.47130 * 60.00138 * 6 5 4 38 38 H 0.97000 * 119.99819 * 0.02562 * 9 7 6 39 39 H 0.96995 * 120.00168 * 180.02562 * 13 12 10 40 40 H 0.97006 * 120.00020 * 265.00547 * 18 2 1 41 41 H 1.09001 * 109.47300 * 59.99920 * 22 21 19 42 42 H 1.08995 * 109.46881 * 179.97438 * 22 21 19 43 43 H 1.08998 * 109.46702 * 299.99760 * 22 21 19 44 44 H 1.08998 * 109.47614 * 60.00391 * 23 21 19 45 45 H 1.09000 * 109.47151 * 180.02562 * 23 21 19 46 46 H 1.09001 * 109.47289 * 300.00099 * 23 21 19 47 47 H 1.07998 * 125.98708 * 0.03013 * 25 24 21 48 48 H 1.08003 * 125.64876 * 179.73611 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5041 -0.8266 1.1903 6 6 4.0303 -1.5159 2.3760 7 6 5.5316 -1.6054 2.2800 8 8 6.1067 -1.1403 1.3185 9 7 6.2354 -2.2013 3.2628 10 6 7.6012 -2.2832 3.1752 11 1 8.1131 -1.8698 2.3188 12 6 8.3267 -2.8981 4.1882 13 7 7.7039 -3.4007 5.2306 14 14 10.1876 -3.0090 4.0692 15 1 10.7614 -1.6413 3.9962 16 1 10.7197 -3.7052 5.2680 17 1 10.5611 -3.7682 2.8488 18 7 2.0184 -0.6905 -1.1962 19 6 2.1418 -0.0195 -2.3586 20 8 1.8532 1.1573 -2.4130 21 6 2.6382 -0.7313 -3.5906 22 6 4.0788 -1.1951 -3.3659 23 6 1.7496 -1.9448 -3.8713 24 6 2.5909 0.2089 -4.7673 25 6 1.8002 0.0984 -5.8519 26 7 2.0608 1.1347 -6.6626 27 6 2.9888 1.8785 -6.1256 28 7 3.3475 1.3361 -4.9420 29 1 4.0166 1.6808 -4.3301 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.7517 -0.1584 2.1369 34 1 1.6054 -1.7198 1.2951 35 1 3.9280 0.0827 1.0823 36 1 3.7557 -0.9589 3.2719 37 1 3.6096 -2.5199 2.4293 38 1 5.7756 -2.5729 4.0318 39 1 8.2104 -3.8295 5.9379 40 1 2.2490 -1.6317 -1.1527 41 1 4.1130 -1.8752 -2.5147 42 1 4.4377 -1.7104 -4.2568 43 1 4.7117 -0.3306 -3.1659 44 1 0.7233 -1.6144 -4.0314 45 1 2.1089 -2.4599 -4.7621 46 1 1.7838 -2.6248 -3.0201 47 1 1.0807 -0.6857 -6.0354 48 1 3.4019 2.7786 -6.5565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733020000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:03 Heat of formation + Delta-G solvation = -51.025047 kcal Electronic energy + Delta-G solvation = -29373.666295 eV Core-core repulsion = 25269.981222 eV Total energy + Delta-G solvation = -4103.685074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.11283 -40.97606 -40.10923 -37.89043 -36.38276 -36.01852 -35.06503 -33.34401 -33.24008 -31.79993 -29.54692 -28.94604 -28.20362 -26.70704 -25.16720 -24.47482 -23.01899 -22.16939 -21.68906 -21.02116 -20.72410 -19.89960 -19.10208 -17.92190 -17.71140 -17.31635 -16.60618 -16.37396 -16.19794 -15.94096 -15.70710 -15.40211 -15.23007 -15.13597 -15.01178 -14.85037 -14.51518 -14.39170 -14.04263 -13.75316 -13.50715 -13.30829 -13.24559 -13.07836 -13.04382 -12.97607 -12.78757 -12.68296 -12.57204 -12.42837 -12.19766 -12.13429 -11.83880 -11.49263 -11.03902 -10.91016 -10.70270 -10.33535 -10.00504 -9.99371 -9.35915 -9.30792 -8.46321 -5.94635 1.10293 1.39360 1.41749 1.51961 1.64928 2.07490 2.13843 2.27288 2.28718 2.39166 2.90596 3.21507 3.47768 3.52971 3.75683 3.83507 3.89211 3.93135 4.07378 4.18171 4.33796 4.39516 4.50866 4.53642 4.61077 4.63318 4.65911 4.68296 4.69864 4.77512 4.79335 4.86737 4.93361 5.05573 5.17015 5.19451 5.27735 5.37814 5.41074 5.57933 5.78969 5.87416 6.09294 6.31671 6.49965 6.61023 6.62871 7.12690 7.13615 7.28907 7.58193 8.13403 8.70711 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014416 B = 0.002377 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.765224 B =11774.545870 C =13065.268277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.147 3.853 3 H 0.060 0.940 4 C 0.054 3.946 5 N -0.675 5.675 6 C 0.066 3.934 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.332 4.332 11 H 0.078 0.922 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.990 3.010 15 H -0.273 1.273 16 H -0.271 1.271 17 H -0.271 1.271 18 N -0.693 5.693 19 C 0.521 3.479 20 O -0.582 6.582 21 C 0.001 3.999 22 C -0.136 4.136 23 C -0.136 4.136 24 C 0.002 3.998 25 C -0.039 4.039 26 N -0.532 5.532 27 C 0.183 3.817 28 N -0.553 5.553 29 H 0.424 0.576 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.339 0.661 36 H 0.065 0.935 37 H 0.111 0.889 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.413 0.587 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.180 0.820 48 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.899 2.298 -12.331 19.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.042 3.958 3 H 0.078 0.922 4 C -0.075 4.075 5 N -0.306 5.306 6 C -0.067 4.067 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.212 5.212 10 C -0.462 4.462 11 H 0.096 0.904 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.813 3.187 15 H -0.199 1.199 16 H -0.196 1.196 17 H -0.197 1.197 18 N -0.344 5.344 19 C 0.308 3.692 20 O -0.463 6.463 21 C -0.004 4.004 22 C -0.194 4.194 23 C -0.194 4.194 24 C -0.116 4.116 25 C -0.187 4.187 26 N -0.252 5.252 27 C -0.101 4.101 28 N -0.154 5.154 29 H 0.263 0.737 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.157 0.843 36 H 0.083 0.917 37 H 0.129 0.871 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.250 0.750 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.197 0.803 48 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -15.075 2.896 -13.957 20.747 hybrid contribution 1.596 0.367 2.256 2.788 sum -13.478 3.263 -11.701 18.145 Atomic orbital electron populations 1.22049 0.93351 1.03322 1.02349 1.20931 0.94720 0.96162 0.84007 0.92152 1.22375 0.86927 1.02184 0.96014 1.60073 1.05212 1.26108 1.39242 1.21544 0.90308 1.01854 0.92969 1.20930 0.90653 0.82374 0.83502 1.90498 1.72829 1.52976 1.34572 1.41937 1.06790 1.51803 1.20638 1.19592 0.83173 1.36834 1.06583 0.90407 1.25993 1.04691 0.95925 0.94626 1.69657 1.38264 1.38532 1.09631 0.85038 0.77119 0.78538 0.77964 1.19883 1.19591 1.19666 1.45776 1.65656 1.14715 1.08250 1.20722 0.76664 0.86700 0.85150 1.90672 1.52130 1.17672 1.85777 1.19241 0.98899 0.94445 0.87800 1.21858 0.92092 1.01618 1.03853 1.21895 0.98638 0.94278 1.04553 1.20754 0.99552 0.92136 0.99143 1.22319 1.03517 1.00298 0.92548 1.70248 1.16323 1.06496 1.32126 1.25579 0.97491 1.01788 0.85234 1.43219 1.32327 1.20763 1.19091 0.73734 0.90466 0.90267 0.93840 0.92338 0.88255 0.84348 0.91748 0.87133 0.76973 0.91341 0.75032 0.90373 0.90004 0.93815 0.91449 0.89435 0.89526 0.80292 0.74565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.48 71.98 0.68 -1.66 16 2 C 0.15 2.80 2.81 44.99 0.13 2.93 16 3 H 0.06 1.47 7.58 -2.39 -0.02 1.45 16 4 C 0.05 0.95 5.24 86.30 0.45 1.41 16 5 N -0.67 -17.77 5.85 -517.94 -3.03 -20.80 16 6 C 0.07 1.95 6.17 85.56 0.53 2.47 16 7 C 0.44 19.39 7.82 87.66 0.69 20.08 16 8 O -0.62 -32.51 15.78 -3.09 -0.05 -32.56 16 9 N -0.57 -28.07 5.29 -306.97 -1.62 -29.69 16 10 C -0.33 -18.28 9.68 84.04 0.81 -17.47 16 11 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 12 C -0.01 -0.65 5.50 84.92 0.47 -0.19 16 13 N -0.92 -48.37 13.05 21.66 0.28 -48.09 16 14 Si 0.99 41.94 29.55 68.60 2.03 43.97 16 15 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 16 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 17 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 18 N -0.69 -13.44 4.61 -442.54 -2.04 -15.48 16 19 C 0.52 12.25 6.44 87.66 0.56 12.81 16 20 O -0.58 -18.14 15.59 -3.03 -0.05 -18.19 16 21 C 0.00 0.01 0.85 -53.68 -0.05 -0.03 16 22 C -0.14 -2.59 8.39 71.98 0.60 -1.99 16 23 C -0.14 -1.77 7.31 71.98 0.53 -1.25 16 24 C 0.00 0.04 4.96 40.95 0.20 0.24 16 25 C -0.04 -0.93 10.87 83.52 0.91 -0.02 16 26 N -0.53 -13.77 11.25 -200.30 -2.25 -16.02 16 27 C 0.18 3.76 13.04 180.26 2.35 6.11 16 28 N -0.55 -11.62 5.99 -186.49 -1.12 -12.73 16 29 H 0.42 7.87 8.96 -92.71 -0.83 7.03 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.34 10.35 8.43 -89.69 -0.76 9.60 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.40 18.35 7.90 -92.71 -0.73 17.62 16 39 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 40 H 0.41 6.82 7.48 -92.70 -0.69 6.12 16 41 H 0.08 1.49 7.84 -2.39 -0.02 1.48 16 42 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 43 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.07 0.89 7.74 -2.39 -0.02 0.87 16 45 H 0.09 0.95 8.12 -2.39 -0.02 0.93 16 46 H 0.09 0.85 7.35 -2.39 -0.02 0.83 16 47 H 0.18 3.43 7.29 -2.91 -0.02 3.41 16 48 H 0.24 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -75.42 402.34 -0.98 -76.39 By element: Atomic # 1 Polarization: 51.78 SS G_CDS: -2.00 Total: 49.78 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: 8.87 Total: 23.44 kcal Atomic # 7 Polarization: -133.05 SS G_CDS: -9.78 Total: -142.83 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -0.10 Total: -50.75 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -75.42 -0.98 -76.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733020000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.369 kcal (2) G-P(sol) polarization free energy of solvation -75.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds