Wall clock time and date at job start Tue Mar 31 2020 20:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47582 * 2 1 4 4 C 1.34259 * 125.75927 * 124.99610 * 3 2 1 5 5 C 1.38044 * 107.42178 * 179.97438 * 4 3 2 6 6 C 1.47423 * 126.41374 * 180.02562 * 5 4 3 7 7 O 1.21598 * 120.00564 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99774 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00166 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.47118 * 322.99016 * 9 8 6 11 11 C 1.53000 * 109.46846 * 82.98951 * 9 8 6 12 12 C 1.52996 * 109.47370 * 202.99209 * 9 8 6 13 13 N 1.46908 * 109.46992 * 55.15951 * 12 9 8 14 14 C 1.46906 * 110.99894 * 198.92553 * 13 12 9 15 15 C 1.46895 * 110.99581 * 74.97935 * 13 12 9 16 16 C 1.50706 * 109.47034 * 189.99565 * 15 13 12 17 17 O 1.21284 * 119.99662 * 0.02562 * 16 15 13 18 18 N 1.34777 * 119.99883 * 179.97438 * 16 15 13 19 19 C 1.37097 * 119.99913 * 179.97438 * 18 16 15 20 20 H 1.08007 * 119.99958 * 0.02562 * 19 18 16 21 21 C 1.38945 * 120.00289 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99989 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00316 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47202 * 60.00090 * 23 21 19 25 25 H 1.48502 * 109.47378 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47061 * 300.00388 * 23 21 19 27 27 C 1.41295 * 107.16663 * 0.02562 * 5 4 3 28 28 N 1.30442 * 108.02337 * 0.02562 * 27 5 4 29 29 H 1.09005 * 109.46947 * 300.00167 * 1 2 3 30 30 H 1.08998 * 109.47050 * 59.99976 * 1 2 3 31 31 H 1.08998 * 109.47097 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46947 * 239.99833 * 2 1 3 33 33 H 1.08998 * 109.47050 * 120.00024 * 2 1 3 34 34 H 1.08006 * 126.28501 * 0.25374 * 4 3 2 35 35 H 0.97001 * 120.00087 * 0.02562 * 8 6 5 36 36 H 1.09009 * 109.46542 * 180.02562 * 11 9 8 37 37 H 1.08994 * 109.47181 * 299.99702 * 11 9 8 38 38 H 1.08992 * 109.47082 * 60.00369 * 11 9 8 39 39 H 1.08999 * 109.47175 * 175.16232 * 12 9 8 40 40 H 1.09001 * 109.47035 * 295.16905 * 12 9 8 41 41 H 1.08997 * 109.46599 * 54.12773 * 14 13 12 42 42 H 1.08991 * 109.46521 * 174.12297 * 14 13 12 43 43 H 1.08998 * 109.47105 * 294.12816 * 14 13 12 44 44 H 1.08998 * 109.47240 * 309.99671 * 15 13 12 45 45 H 1.08999 * 109.47917 * 69.99775 * 15 13 12 46 46 H 0.96998 * 120.00302 * 0.02562 * 18 16 15 47 47 H 0.96997 * 119.99910 * 180.02562 * 22 21 19 48 48 H 1.07997 * 125.98308 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8691 1.9125 0.8925 5 6 3.0716 3.2307 0.5364 6 6 3.9336 4.2029 1.2329 7 8 4.5518 3.8664 2.2245 8 7 4.0366 5.4647 0.7706 9 6 4.8927 6.4310 1.4631 10 1 4.8319 6.2650 2.5387 11 6 6.3403 6.2530 1.0006 12 6 4.4248 7.8512 1.1390 13 7 3.0015 7.9867 1.4767 14 6 2.4050 9.1403 0.7899 15 6 2.8123 8.0840 2.9302 16 6 1.3445 7.9746 3.2542 17 8 0.5359 7.8294 2.3620 18 7 0.9308 8.0371 4.5353 19 6 -0.4045 7.9381 4.8300 20 1 -1.1248 7.8096 4.0355 21 6 -0.8312 8.0031 6.1507 22 7 0.0451 8.1600 7.1174 23 14 -2.6504 7.8675 6.5523 24 1 -3.1673 6.5607 6.0723 25 1 -2.8417 7.9652 8.0217 26 1 -3.3887 8.9681 5.8822 27 6 2.2980 3.4737 -0.6207 28 7 1.6763 2.3694 -0.9298 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3166 1.4011 1.7320 35 1 3.5432 5.7333 -0.0202 36 1 6.9773 6.9717 1.5162 37 1 6.6736 5.2413 1.2316 38 1 6.4011 6.4190 -0.0749 39 1 5.0059 8.5668 1.7206 40 1 4.5661 8.0466 0.0760 41 1 2.5892 9.0602 -0.2815 42 1 1.3308 9.1568 0.9736 43 1 2.8526 10.0594 1.1678 44 1 3.3541 7.2762 3.4220 45 1 3.1916 9.0432 3.2827 46 1 1.5776 8.1529 5.2488 47 1 -0.2527 8.2050 8.0394 48 1 2.2322 4.4100 -1.1550 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733030454.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:31 Heat of formation + Delta-G solvation = 10.393775 kcal Electronic energy + Delta-G solvation = -29539.636884 eV Core-core repulsion = 25438.615130 eV Total energy + Delta-G solvation = -4101.021754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.37776 -39.35944 -38.41860 -36.76310 -34.69924 -34.56554 -33.69835 -31.25256 -31.18181 -30.59921 -29.23879 -27.99037 -26.88118 -24.66350 -24.32805 -23.23267 -22.18008 -20.89607 -20.49507 -19.89970 -19.04734 -17.94679 -17.78988 -16.28795 -16.05748 -15.89940 -15.75045 -15.21758 -14.76066 -14.67829 -14.45207 -14.30752 -13.99638 -13.84181 -13.77244 -13.52868 -13.36457 -12.88791 -12.78923 -12.63183 -12.42081 -12.28424 -12.08108 -11.95909 -11.77988 -11.71111 -11.44220 -11.35670 -11.16524 -10.98418 -10.97107 -10.56077 -10.40419 -10.16609 -9.64621 -9.61757 -9.41641 -8.88782 -8.56968 -8.39792 -7.92804 -7.81169 -6.36319 -3.76897 1.56047 2.21395 2.25002 3.23016 3.28239 3.32623 3.45443 3.71751 3.96839 4.04179 4.22416 4.28506 4.62770 4.68833 4.77025 4.82589 4.87660 5.12477 5.16149 5.23395 5.27530 5.30051 5.35840 5.37338 5.48995 5.54120 5.60911 5.67137 5.71854 5.77863 5.79982 5.85129 5.96244 6.04581 6.11624 6.20967 6.34560 6.39844 6.56226 6.74642 6.76903 7.28854 7.40112 7.49326 7.59764 7.86082 8.11621 8.57472 8.67820 9.23539 9.60707 10.12823 10.81540 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007797 B = 0.003538 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3590.174732 B = 7912.072482 C =10302.957186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.128 3.872 3 N -0.363 5.363 4 C 0.124 3.876 5 C -0.287 4.287 6 C 0.598 3.402 7 O -0.559 6.559 8 N -0.701 5.701 9 C 0.149 3.851 10 H 0.086 0.914 11 C -0.161 4.161 12 C 0.042 3.958 13 N -0.515 5.515 14 C 0.023 3.977 15 C 0.044 3.956 16 C 0.447 3.553 17 O -0.578 6.578 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.086 3.914 28 N -0.298 5.298 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.186 0.814 35 H 0.401 0.599 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.014 0.986 44 H 0.087 0.913 45 H 0.047 0.953 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.401 -10.072 -14.275 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.007 3.993 3 N -0.143 5.143 4 C -0.027 4.027 5 C -0.302 4.302 6 C 0.386 3.614 7 O -0.439 6.439 8 N -0.350 5.350 9 C 0.044 3.956 10 H 0.104 0.896 11 C -0.220 4.220 12 C -0.086 4.086 13 N -0.238 5.238 14 C -0.125 4.125 15 C -0.087 4.087 16 C 0.232 3.768 17 O -0.462 6.462 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.119 0.881 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.200 1.200 27 C -0.101 4.101 28 N -0.118 5.118 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.203 0.797 35 H 0.236 0.764 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.115 0.885 43 H 0.032 0.968 44 H 0.105 0.895 45 H 0.065 0.935 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 9.142 -11.517 -14.944 20.965 hybrid contribution 0.214 1.303 1.346 1.885 sum 9.356 -10.214 -13.598 19.411 Atomic orbital electron populations 1.22069 0.93384 1.02984 1.04076 1.21791 0.96504 0.77006 1.03999 1.48604 1.34420 1.10545 1.20734 1.22956 0.91769 0.93796 0.94199 1.20266 1.11436 0.95271 1.03182 1.17159 0.79910 0.81465 0.82882 1.90742 1.47707 1.79073 1.26335 1.45476 1.48093 1.09757 1.31721 1.20904 0.88957 0.87463 0.98311 0.89584 1.22148 0.95851 1.02711 1.01251 1.22499 0.89478 0.95331 1.01335 1.61555 1.12330 1.42571 1.07366 1.22552 1.03107 0.89379 0.97448 1.21923 0.97255 1.00860 0.88666 1.19703 0.89163 0.84257 0.83650 1.90465 1.55085 1.54533 1.46090 1.41854 1.08705 1.63758 1.05855 1.19629 0.83370 1.46772 0.92962 0.88054 1.25240 1.00004 0.97428 0.95250 1.69609 1.34342 1.50120 1.00306 0.85942 0.82316 0.79023 0.77062 1.19969 1.20994 1.19950 1.24061 0.93670 0.97261 0.95150 1.77109 1.23612 0.97247 1.13802 0.91686 0.90910 0.90587 0.89492 0.88344 0.79742 0.76426 0.91820 0.91794 0.92553 0.93371 0.90337 0.92340 0.88480 0.96759 0.89471 0.93525 0.77542 0.91882 0.79416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 10.09 37.16 0.37 -0.89 16 2 C 0.13 0.93 7.21 -4.04 -0.03 0.90 16 3 N -0.36 -4.13 3.65 -60.81 -0.22 -4.35 16 4 C 0.12 1.52 11.25 -16.56 -0.19 1.33 16 5 C -0.29 -3.99 6.13 -105.07 -0.64 -4.63 16 6 C 0.60 9.27 7.75 -12.52 -0.10 9.17 16 7 O -0.56 -10.34 16.58 5.28 0.09 -10.25 16 8 N -0.70 -9.26 4.82 -54.88 -0.26 -9.53 16 9 C 0.15 1.87 2.55 -67.93 -0.17 1.70 16 10 H 0.09 1.31 6.41 -51.93 -0.33 0.97 16 11 C -0.16 -1.64 9.46 37.16 0.35 -1.29 16 12 C 0.04 0.50 4.54 -3.82 -0.02 0.48 16 13 N -0.51 -8.10 4.16 -244.37 -1.02 -9.12 16 14 C 0.02 0.35 9.17 60.07 0.55 0.90 16 15 C 0.04 0.81 5.28 -4.98 -0.03 0.78 16 16 C 0.45 10.71 7.52 -10.98 -0.08 10.63 16 17 O -0.58 -15.50 13.88 5.55 0.08 -15.42 16 18 N -0.57 -14.69 5.29 -10.96 -0.06 -14.75 16 19 C -0.30 -8.46 9.68 -14.94 -0.14 -8.61 16 20 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -25.09 13.05 55.50 0.72 -24.36 16 23 Si 0.93 21.48 29.55 -169.99 -5.02 16.46 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 27 C 0.09 1.10 11.50 -16.98 -0.20 0.91 16 28 N -0.30 -3.95 12.33 30.86 0.38 -3.57 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.48 8.06 -51.93 -0.42 0.06 16 34 H 0.19 1.85 8.06 -52.48 -0.42 1.43 16 35 H 0.40 4.67 7.54 -40.82 -0.31 4.36 16 36 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.53 8.01 -51.93 -0.42 0.11 16 40 H 0.08 0.77 7.81 -51.93 -0.41 0.36 16 41 H 0.06 0.73 7.94 -51.93 -0.41 0.32 16 42 H 0.10 1.85 5.92 -51.93 -0.31 1.55 16 43 H 0.01 0.20 8.13 -51.93 -0.42 -0.22 16 44 H 0.09 1.56 6.66 -51.93 -0.35 1.21 16 45 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 46 H 0.39 9.84 7.90 -40.82 -0.32 9.52 16 47 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.19 1.88 7.50 -52.49 -0.39 1.49 16 LS Contribution 402.75 15.07 6.07 6.07 Total: -1.00 -35.69 402.75 -7.06 -42.74 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -7.40 Total: 14.20 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: -0.41 Total: 11.89 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: -0.46 Total: -65.68 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: 0.16 Total: -25.67 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.69 -7.06 -42.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733030454.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.137 kcal (2) G-P(sol) polarization free energy of solvation -35.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds