Wall clock time and date at job start Tue Mar 31 2020 20:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47582 * 2 1 4 4 C 1.34259 * 125.75927 * 124.99610 * 3 2 1 5 5 C 1.38044 * 107.42178 * 179.97438 * 4 3 2 6 6 C 1.47423 * 126.41374 * 180.02562 * 5 4 3 7 7 O 1.21598 * 120.00564 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99774 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00166 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.47118 * 322.99016 * 9 8 6 11 11 C 1.53000 * 109.46846 * 82.98951 * 9 8 6 12 12 C 1.52996 * 109.47370 * 202.99209 * 9 8 6 13 13 N 1.46908 * 109.46992 * 55.15951 * 12 9 8 14 14 C 1.46906 * 110.99894 * 198.92553 * 13 12 9 15 15 C 1.46895 * 110.99581 * 74.97935 * 13 12 9 16 16 C 1.50706 * 109.47034 * 189.99565 * 15 13 12 17 17 O 1.21284 * 119.99662 * 0.02562 * 16 15 13 18 18 N 1.34777 * 119.99883 * 179.97438 * 16 15 13 19 19 C 1.37097 * 119.99913 * 179.97438 * 18 16 15 20 20 H 1.08007 * 119.99958 * 0.02562 * 19 18 16 21 21 C 1.38945 * 120.00289 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99989 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00316 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47202 * 60.00090 * 23 21 19 25 25 H 1.48502 * 109.47378 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47061 * 300.00388 * 23 21 19 27 27 C 1.41295 * 107.16663 * 0.02562 * 5 4 3 28 28 N 1.30442 * 108.02337 * 0.02562 * 27 5 4 29 29 H 1.09005 * 109.46947 * 300.00167 * 1 2 3 30 30 H 1.08998 * 109.47050 * 59.99976 * 1 2 3 31 31 H 1.08998 * 109.47097 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46947 * 239.99833 * 2 1 3 33 33 H 1.08998 * 109.47050 * 120.00024 * 2 1 3 34 34 H 1.08006 * 126.28501 * 0.25374 * 4 3 2 35 35 H 0.97001 * 120.00087 * 0.02562 * 8 6 5 36 36 H 1.09009 * 109.46542 * 180.02562 * 11 9 8 37 37 H 1.08994 * 109.47181 * 299.99702 * 11 9 8 38 38 H 1.08992 * 109.47082 * 60.00369 * 11 9 8 39 39 H 1.08999 * 109.47175 * 175.16232 * 12 9 8 40 40 H 1.09001 * 109.47035 * 295.16905 * 12 9 8 41 41 H 1.08997 * 109.46599 * 54.12773 * 14 13 12 42 42 H 1.08991 * 109.46521 * 174.12297 * 14 13 12 43 43 H 1.08998 * 109.47105 * 294.12816 * 14 13 12 44 44 H 1.08998 * 109.47240 * 309.99671 * 15 13 12 45 45 H 1.08999 * 109.47917 * 69.99775 * 15 13 12 46 46 H 0.96998 * 120.00302 * 0.02562 * 18 16 15 47 47 H 0.96997 * 119.99910 * 180.02562 * 22 21 19 48 48 H 1.07997 * 125.98308 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8691 1.9125 0.8925 5 6 3.0716 3.2307 0.5364 6 6 3.9336 4.2029 1.2329 7 8 4.5518 3.8664 2.2245 8 7 4.0366 5.4647 0.7706 9 6 4.8927 6.4310 1.4631 10 1 4.8319 6.2650 2.5387 11 6 6.3403 6.2530 1.0006 12 6 4.4248 7.8512 1.1390 13 7 3.0015 7.9867 1.4767 14 6 2.4050 9.1403 0.7899 15 6 2.8123 8.0840 2.9302 16 6 1.3445 7.9746 3.2542 17 8 0.5359 7.8294 2.3620 18 7 0.9308 8.0371 4.5353 19 6 -0.4045 7.9381 4.8300 20 1 -1.1248 7.8096 4.0355 21 6 -0.8312 8.0031 6.1507 22 7 0.0451 8.1600 7.1174 23 14 -2.6504 7.8675 6.5523 24 1 -3.1673 6.5607 6.0723 25 1 -2.8417 7.9652 8.0217 26 1 -3.3887 8.9681 5.8822 27 6 2.2980 3.4737 -0.6207 28 7 1.6763 2.3694 -0.9298 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3166 1.4011 1.7320 35 1 3.5432 5.7333 -0.0202 36 1 6.9773 6.9717 1.5162 37 1 6.6736 5.2413 1.2316 38 1 6.4011 6.4190 -0.0749 39 1 5.0059 8.5668 1.7206 40 1 4.5661 8.0466 0.0760 41 1 2.5892 9.0602 -0.2815 42 1 1.3308 9.1568 0.9736 43 1 2.8526 10.0594 1.1678 44 1 3.3541 7.2762 3.4220 45 1 3.1916 9.0432 3.2827 46 1 1.5776 8.1529 5.2488 47 1 -0.2527 8.2050 8.0394 48 1 2.2322 4.4100 -1.1550 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733030454.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:30 Heat of formation + Delta-G solvation = -17.127339 kcal Electronic energy + Delta-G solvation = -29540.830289 eV Core-core repulsion = 25438.615130 eV Total energy + Delta-G solvation = -4102.215159 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.32319 -40.62092 -40.04187 -38.15410 -36.07550 -35.52771 -35.37367 -33.26328 -32.27726 -31.49540 -30.14017 -29.54998 -27.90994 -26.58978 -25.14404 -24.22227 -23.41180 -21.90479 -21.49939 -21.03050 -20.76194 -19.83310 -18.90104 -17.87366 -17.19224 -16.95816 -16.64989 -16.58035 -16.52523 -15.95912 -15.74404 -15.43571 -15.31589 -15.21486 -14.99086 -14.78859 -14.64913 -14.10515 -13.76927 -13.66566 -13.44540 -13.35171 -13.28347 -13.05967 -12.98765 -12.86145 -12.79217 -12.59008 -12.48089 -12.44328 -12.34092 -12.13485 -11.87870 -11.65468 -11.42575 -10.80764 -10.56060 -10.24501 -10.00450 -9.98202 -9.54790 -9.15099 -8.45552 -5.94228 0.58409 1.21586 1.38575 1.39568 1.43867 1.50890 2.07638 2.27893 2.41814 2.61560 2.84111 3.21207 3.40311 3.50054 3.81409 3.87865 4.02678 4.06805 4.15437 4.21943 4.25192 4.33929 4.38181 4.43729 4.46488 4.54804 4.63087 4.69663 4.74370 4.76824 4.78836 4.84486 4.87131 4.90999 5.15505 5.20066 5.27847 5.36669 5.40886 5.46002 5.70347 5.90922 5.91554 6.09773 6.26866 6.53591 6.61718 6.79688 7.14002 7.45735 7.58010 8.14009 8.72018 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007797 B = 0.003538 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3590.174732 B = 7912.072482 C =10302.957186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 N -0.359 5.359 4 C 0.124 3.876 5 C -0.315 4.315 6 C 0.592 3.408 7 O -0.599 6.599 8 N -0.693 5.693 9 C 0.146 3.854 10 H 0.055 0.945 11 C -0.150 4.150 12 C 0.049 3.951 13 N -0.530 5.530 14 C 0.028 3.972 15 C 0.058 3.942 16 C 0.444 3.556 17 O -0.609 6.609 18 N -0.578 5.578 19 C -0.332 4.332 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.923 5.923 23 Si 0.992 3.008 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.269 1.269 27 C 0.085 3.915 28 N -0.321 5.321 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.203 0.797 35 H 0.409 0.591 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.027 0.973 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.393 0.607 47 H 0.277 0.723 48 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.209 -10.213 -15.184 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.002 4.002 3 N -0.138 5.138 4 C -0.029 4.029 5 C -0.330 4.330 6 C 0.381 3.619 7 O -0.482 6.482 8 N -0.342 5.342 9 C 0.041 3.959 10 H 0.073 0.927 11 C -0.209 4.209 12 C -0.078 4.078 13 N -0.254 5.254 14 C -0.120 4.120 15 C -0.073 4.073 16 C 0.231 3.769 17 O -0.495 6.495 18 N -0.216 5.216 19 C -0.461 4.461 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.564 5.564 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.194 1.194 26 H -0.194 1.194 27 C -0.103 4.103 28 N -0.141 5.141 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.145 0.855 34 H 0.220 0.780 35 H 0.245 0.755 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.128 0.872 41 H 0.108 0.892 42 H 0.071 0.929 43 H 0.046 0.954 44 H 0.108 0.892 45 H 0.085 0.915 46 H 0.227 0.773 47 H 0.086 0.914 48 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 9.959 -11.644 -15.891 22.074 hybrid contribution -0.023 1.295 1.560 2.028 sum 9.936 -10.349 -14.330 20.278 Atomic orbital electron populations 1.22039 0.93667 1.04257 1.02106 1.22229 0.96262 0.75304 1.06393 1.48963 1.33600 1.11461 1.19750 1.23306 0.91454 0.93618 0.94478 1.20357 1.12520 0.95930 1.04207 1.17452 0.79690 0.82272 0.82508 1.90707 1.49498 1.79871 1.28108 1.45484 1.47847 1.09242 1.31675 1.20988 0.90415 0.87826 0.96668 0.92658 1.22047 0.94109 1.02031 1.02708 1.22572 0.86908 0.94875 1.03495 1.61473 1.15254 1.43179 1.05475 1.22441 1.00359 0.89780 0.99376 1.21727 0.92638 1.02007 0.90926 1.20748 0.91556 0.82050 0.82526 1.90444 1.56898 1.55300 1.46816 1.41955 1.08075 1.64764 1.06781 1.19612 0.84360 1.48995 0.93142 0.90329 1.26034 1.04294 0.96428 0.94605 1.69679 1.36034 1.50010 1.00662 0.85011 0.77100 0.78879 0.77469 1.19966 1.19428 1.19445 1.24372 0.93065 0.97961 0.94867 1.77055 1.24274 0.97884 1.14891 0.93670 0.92737 0.87712 0.87618 0.85461 0.77980 0.75471 0.90027 0.93816 0.90483 0.91487 0.87193 0.89163 0.92906 0.95426 0.89162 0.91455 0.77336 0.91373 0.77572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 10.09 71.98 0.73 -1.59 16 2 C 0.12 1.51 7.21 86.38 0.62 2.13 16 3 N -0.36 -7.90 3.65 -346.30 -1.26 -9.16 16 4 C 0.12 3.00 11.25 84.28 0.95 3.95 16 5 C -0.32 -8.82 6.13 -20.15 -0.12 -8.95 16 6 C 0.59 18.61 7.75 86.66 0.67 19.28 16 7 O -0.60 -22.81 16.58 -4.02 -0.07 -22.87 16 8 N -0.69 -17.89 4.82 -445.80 -2.15 -20.03 16 9 C 0.15 3.47 2.55 44.99 0.11 3.59 16 10 H 0.06 1.68 6.41 -2.38 -0.02 1.66 16 11 C -0.15 -2.76 9.46 71.98 0.68 -2.08 16 12 C 0.05 1.01 4.54 86.30 0.39 1.40 16 13 N -0.53 -15.84 4.16 -927.05 -3.86 -19.70 16 14 C 0.03 0.81 9.17 127.69 1.17 1.98 16 15 C 0.06 2.10 5.28 85.56 0.45 2.55 16 16 C 0.44 21.75 7.52 87.66 0.66 22.41 16 17 O -0.61 -33.70 13.88 -3.04 -0.04 -33.74 16 18 N -0.58 -30.94 5.29 -306.98 -1.62 -32.56 16 19 C -0.33 -19.40 9.68 84.04 0.81 -18.59 16 20 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 21 C -0.01 -0.78 5.50 84.92 0.47 -0.32 16 22 N -0.92 -51.49 13.05 21.66 0.28 -51.21 16 23 Si 0.99 44.15 29.55 68.60 2.03 46.18 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 C 0.08 2.14 11.50 85.65 0.99 3.13 16 28 N -0.32 -8.43 12.33 -56.28 -0.69 -9.12 16 29 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.13 0.92 8.06 -2.39 -0.02 0.90 16 34 H 0.20 3.96 8.06 -2.91 -0.02 3.93 16 35 H 0.41 9.04 7.54 -92.71 -0.70 8.34 16 36 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.04 0.99 8.13 -2.39 -0.02 0.98 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.20 8.01 -2.39 -0.02 1.18 16 40 H 0.11 1.64 7.81 -2.39 -0.02 1.63 16 41 H 0.09 1.99 7.94 -2.39 -0.02 1.97 16 42 H 0.05 2.02 5.92 -2.39 -0.01 2.00 16 43 H 0.03 0.71 8.13 -2.39 -0.02 0.69 16 44 H 0.09 3.22 6.66 -2.39 -0.02 3.21 16 45 H 0.07 2.15 8.11 -2.39 -0.02 2.13 16 46 H 0.39 20.30 7.90 -92.71 -0.73 19.56 16 47 H 0.28 14.49 8.31 -92.71 -0.77 13.71 16 48 H 0.21 4.03 7.50 -2.91 -0.02 4.01 16 Total: -1.00 -80.48 402.75 0.75 -79.73 By element: Atomic # 1 Polarization: 44.02 SS G_CDS: -0.44 Total: 43.58 kcal Atomic # 6 Polarization: 20.32 SS G_CDS: 8.58 Total: 28.90 kcal Atomic # 7 Polarization: -132.48 SS G_CDS: -9.30 Total: -141.78 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -0.11 Total: -56.61 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -80.48 0.75 -79.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733030454.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.604 kcal (2) G-P(sol) polarization free energy of solvation -80.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds