Wall clock time and date at job start Tue Mar 31 2020 20:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46890 * 2 1 4 4 N 1.28444 * 125.19372 * 265.57331 * 3 2 1 5 5 C 1.30856 * 110.93150 * 180.16230 * 4 3 2 6 6 C 1.39675 * 107.86022 * 359.61342 * 5 4 3 7 7 C 1.36605 * 125.19186 * 85.31063 * 3 2 1 8 8 C 1.47159 * 126.88245 * 359.97438 * 7 3 2 9 9 O 1.21636 * 120.00118 * 353.16384 * 8 7 3 10 10 N 1.34777 * 120.00074 * 173.16646 * 8 7 3 11 11 C 1.46499 * 119.99653 * 354.47115 * 10 8 7 12 12 C 1.46496 * 120.00019 * 174.47599 * 10 8 7 13 13 C 1.53005 * 109.47115 * 89.99888 * 12 10 8 14 14 C 1.53005 * 109.46855 * 179.97438 * 13 12 10 15 15 N 1.46896 * 109.46974 * 179.97438 * 14 13 12 16 16 C 1.46902 * 111.00084 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47047 * 180.02562 * 16 15 14 18 18 O 1.21288 * 120.00201 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99883 * 179.97438 * 17 16 15 20 20 C 1.37092 * 120.00150 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00061 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00433 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00390 * 179.97438 * 22 20 19 24 24 Si 1.86808 * 119.99658 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47119 * 89.99912 * 24 22 20 26 26 H 1.48497 * 109.47003 * 209.99978 * 24 22 20 27 27 H 1.48504 * 109.47075 * 330.00078 * 24 22 20 28 28 H 1.08991 * 109.47134 * 64.90443 * 1 2 3 29 29 H 1.09002 * 109.47175 * 184.90766 * 1 2 3 30 30 H 1.08998 * 109.47068 * 304.90295 * 1 2 3 31 31 H 1.08993 * 109.47322 * 239.99842 * 2 1 3 32 32 H 1.09002 * 109.47577 * 119.99588 * 2 1 3 33 33 H 1.07999 * 126.07028 * 179.87830 * 5 4 3 34 34 H 1.08002 * 127.31923 * 180.24711 * 6 5 4 35 35 H 1.08999 * 109.46874 * 84.19394 * 11 10 8 36 36 H 1.09002 * 109.46730 * 204.18813 * 11 10 8 37 37 H 1.08999 * 109.47497 * 324.18691 * 11 10 8 38 38 H 1.09000 * 109.46977 * 209.99798 * 12 10 8 39 39 H 1.08994 * 109.47423 * 329.99579 * 12 10 8 40 40 H 1.08997 * 109.46688 * 299.99583 * 13 12 10 41 41 H 1.08995 * 109.47338 * 60.00109 * 13 12 10 42 42 H 1.09000 * 109.47330 * 299.99968 * 14 13 12 43 43 H 1.09009 * 109.46922 * 59.99957 * 14 13 12 44 44 H 1.00905 * 110.99917 * 56.05069 * 15 14 13 45 45 H 1.09004 * 109.46931 * 300.00318 * 16 15 14 46 46 H 1.08991 * 109.47493 * 59.99966 * 16 15 14 47 47 H 0.97000 * 120.00090 * 359.97438 * 19 17 16 48 48 H 0.96994 * 119.99998 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3414 2.0522 -1.0465 5 6 2.7439 3.2550 -0.7248 6 6 2.6655 3.3757 0.6645 7 6 2.1946 2.1539 1.1126 8 6 1.9352 1.7652 2.5081 9 8 1.4031 0.6993 2.7536 10 7 2.2872 2.5902 3.5140 11 6 3.0357 3.8166 3.2276 12 6 1.9215 2.2606 4.8937 13 6 3.0342 1.4257 5.5308 14 6 2.6523 1.0820 6.9720 15 7 3.7203 0.2799 7.5835 16 6 3.3873 -0.0701 8.9708 17 6 4.5039 -0.8903 9.5637 18 8 5.4807 -1.1575 8.8962 19 7 4.4170 -1.3270 10.8359 20 6 5.4324 -2.0736 11.3752 21 1 6.3022 -2.3115 10.7808 22 6 5.3427 -2.5243 12.6865 23 7 6.3158 -3.2404 13.2033 24 14 3.8386 -2.1122 13.7148 25 1 2.8148 -3.1739 13.5421 26 1 4.2258 -2.0260 15.1459 27 1 3.2794 -0.8090 13.2740 28 1 -0.3633 0.4358 -0.9306 29 1 -0.3633 -1.0239 0.0879 30 1 -0.3633 0.5880 0.8428 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.0736 4.0202 -1.4120 34 1 2.9184 4.2391 1.2620 35 1 2.3418 4.6079 2.9441 36 1 3.5895 4.1200 4.1161 37 1 3.7328 3.6342 2.4097 38 1 1.7858 3.1801 5.4632 39 1 0.9923 1.6908 4.8971 40 1 3.1697 0.5063 4.9613 41 1 3.9633 1.9956 5.5275 42 1 2.5169 2.0017 7.5412 43 1 1.7230 0.5123 6.9757 44 1 4.6065 0.7599 7.5341 45 1 3.2571 0.8414 9.5542 46 1 2.4631 -0.6475 8.9880 47 1 3.6360 -1.1130 11.3698 48 1 6.2533 -3.5546 14.1188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733095711.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:43 Heat of formation + Delta-G solvation = 2.328402 kcal Electronic energy + Delta-G solvation = -28244.164781 eV Core-core repulsion = 24142.793286 eV Total energy + Delta-G solvation = -4101.371494 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.58845 -40.70912 -40.30318 -37.71074 -36.77335 -35.94341 -35.33748 -33.79492 -33.42406 -31.53123 -30.76309 -28.91271 -27.95476 -26.61884 -25.15383 -24.71897 -23.24111 -22.72993 -22.01437 -21.28206 -20.37723 -20.24049 -18.38146 -17.88387 -17.61914 -17.22066 -17.16564 -16.71446 -16.67484 -16.17681 -15.74275 -15.69319 -15.58889 -15.23727 -14.97256 -14.88708 -14.78786 -14.36760 -14.15252 -14.02317 -13.95389 -13.62365 -13.37483 -13.12339 -13.03173 -12.94024 -12.79698 -12.61869 -12.43863 -12.39982 -12.27497 -11.97559 -11.69560 -11.55603 -11.52234 -11.13835 -10.46579 -10.29478 -10.25987 -9.99976 -9.72800 -9.30840 -8.42008 -6.03347 0.21635 1.29985 1.32754 1.36134 1.44890 1.66036 1.94286 2.02224 2.13120 2.22962 2.74278 3.14122 3.33018 3.43924 3.55312 3.97288 3.98394 4.06982 4.09545 4.16110 4.20466 4.24971 4.29144 4.36768 4.42321 4.49294 4.54462 4.58734 4.64651 4.65468 4.68749 4.80507 4.80838 4.83513 4.95814 5.06369 5.16808 5.21742 5.49123 5.52108 5.58073 5.74304 5.90153 6.06802 6.20162 6.40372 6.59057 6.86963 6.92906 7.10551 7.38553 7.95390 8.75677 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023784 B = 0.001666 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.959526 B =16804.614836 C =17087.880171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.112 3.888 3 N -0.268 5.268 4 N -0.304 5.304 5 C -0.010 4.010 6 C -0.191 4.191 7 C -0.061 4.061 8 C 0.578 3.422 9 O -0.570 6.570 10 N -0.596 5.596 11 C 0.050 3.950 12 C 0.125 3.875 13 C -0.123 4.123 14 C 0.067 3.933 15 N -0.696 5.696 16 C 0.063 3.937 17 C 0.446 3.554 18 O -0.617 6.617 19 N -0.590 5.590 20 C -0.331 4.331 21 H 0.053 0.947 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.967 3.033 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.229 1.229 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.218 0.782 34 H 0.210 0.790 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.344 0.656 45 H 0.082 0.918 46 H 0.112 0.888 47 H 0.391 0.609 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.377 21.568 -23.754 36.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.008 4.008 3 N -0.057 5.057 4 N -0.137 5.137 5 C -0.185 4.185 6 C -0.219 4.219 7 C -0.189 4.189 8 C 0.366 3.634 9 O -0.450 6.450 10 N -0.327 5.327 11 C -0.091 4.091 12 C 0.003 3.997 13 C -0.162 4.162 14 C -0.062 4.062 15 N -0.328 5.328 16 C -0.069 4.069 17 C 0.234 3.766 18 O -0.502 6.502 19 N -0.232 5.232 20 C -0.460 4.460 21 H 0.072 0.928 22 C -0.215 4.215 23 N -0.575 5.575 24 Si 0.787 3.213 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.152 1.152 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.066 0.934 31 H 0.130 0.870 32 H 0.114 0.886 33 H 0.234 0.766 34 H 0.226 0.774 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.135 0.865 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.163 0.837 45 H 0.100 0.900 46 H 0.130 0.870 47 H 0.226 0.774 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.373 19.279 -25.055 35.602 hybrid contribution 0.218 0.649 1.866 1.988 sum -16.155 19.928 -23.189 34.581 Atomic orbital electron populations 1.21984 0.92696 1.04315 1.01971 1.22163 0.96811 0.76373 1.05416 1.46040 1.44779 1.12752 1.02082 1.73187 1.17795 1.08345 1.14372 1.24296 1.03646 0.94433 0.96135 1.23480 1.04669 0.97915 0.95834 1.21581 1.12787 0.94977 0.89550 1.17246 0.78577 0.83627 0.83928 1.90801 1.45517 1.23633 1.85059 1.47574 1.55206 1.23715 1.06192 1.22790 0.96834 0.84942 1.04530 1.21527 0.97311 1.01093 0.79810 1.21786 0.99432 0.99810 0.95168 1.21911 0.94251 0.96072 0.93924 1.60001 1.06286 1.49914 1.16646 1.21622 0.96261 0.99221 0.89775 1.21063 0.89680 0.84098 0.81760 1.90541 1.36206 1.61975 1.61435 1.42023 1.19687 1.49056 1.12389 1.19012 0.99763 1.29728 0.97533 0.92837 1.26157 1.01861 0.95819 0.97631 1.69806 1.34765 1.36491 1.16415 0.85336 0.77451 0.80655 0.77881 1.18274 1.19914 1.15221 0.91777 0.88538 0.93433 0.86959 0.88612 0.76571 0.77364 0.89330 0.88640 0.89198 0.86476 0.90845 0.94054 0.91122 0.92344 0.90666 0.83702 0.90006 0.87034 0.77378 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 10.14 71.98 0.73 -1.71 16 2 C 0.11 2.04 6.32 86.38 0.55 2.58 16 3 N -0.27 -5.54 3.35 -334.70 -1.12 -6.66 16 4 N -0.30 -6.04 11.90 -57.14 -0.68 -6.72 16 5 C -0.01 -0.13 12.03 85.19 1.02 0.89 16 6 C -0.19 -2.37 8.87 22.66 0.20 -2.17 16 7 C -0.06 -1.17 6.79 40.78 0.28 -0.90 16 8 C 0.58 12.35 7.63 86.59 0.66 13.01 16 9 O -0.57 -15.91 13.99 -4.15 -0.06 -15.97 16 10 N -0.60 -8.76 2.87 -850.98 -2.45 -11.21 16 11 C 0.05 0.31 8.67 127.77 1.11 1.41 16 12 C 0.13 1.76 5.34 86.38 0.46 2.22 16 13 C -0.12 -2.34 5.80 30.60 0.18 -2.16 16 14 C 0.07 1.34 5.69 86.31 0.49 1.83 16 15 N -0.70 -20.77 6.13 -517.92 -3.17 -23.94 16 16 C 0.06 1.94 6.17 85.56 0.53 2.47 16 17 C 0.45 20.48 7.82 87.66 0.69 21.17 16 18 O -0.62 -35.09 15.78 -3.05 -0.05 -35.13 16 19 N -0.59 -28.10 5.09 -306.99 -1.56 -29.66 16 20 C -0.33 -19.66 10.16 84.04 0.85 -18.80 16 21 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 22 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 23 N -0.93 -56.73 13.96 21.66 0.30 -56.43 16 24 Si 0.97 38.76 27.74 68.60 1.90 40.67 16 25 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 26 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 27 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 0.95 7.67 -2.39 -0.02 0.94 16 31 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.10 2.02 6.76 -2.39 -0.02 2.00 16 33 H 0.22 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.21 0.94 4.60 -2.91 -0.01 0.93 16 35 H 0.09 0.16 7.43 -2.39 -0.02 0.14 16 36 H 0.09 0.31 8.03 -2.39 -0.02 0.29 16 37 H 0.09 0.54 5.27 -2.39 -0.01 0.53 16 38 H 0.12 0.84 8.07 -2.39 -0.02 0.82 16 39 H 0.07 1.27 7.50 -2.39 -0.02 1.26 16 40 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.34 10.80 8.43 -89.69 -0.76 10.04 16 45 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 46 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 47 H 0.39 15.23 5.76 -92.71 -0.53 14.70 16 48 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -88.36 395.02 0.98 -87.38 By element: Atomic # 1 Polarization: 38.61 SS G_CDS: -0.35 Total: 38.26 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 8.21 Total: 19.41 kcal Atomic # 7 Polarization: -125.93 SS G_CDS: -8.68 Total: -134.61 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -0.11 Total: -51.10 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 1.90 Total: 40.67 kcal Total: -88.36 0.98 -87.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733095711.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.712 kcal (2) G-P(sol) polarization free energy of solvation -88.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds