Wall clock time and date at job start Tue Mar 31 2020 20:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47385 * 2 1 4 4 C 1.53005 * 109.46919 * 240.00107 * 2 1 3 5 5 N 1.46492 * 109.47363 * 185.00413 * 4 2 1 6 6 C 1.34774 * 120.00453 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99519 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.00713 * 179.97438 * 6 5 4 9 9 C 1.50699 * 109.47843 * 179.97438 * 8 6 5 10 10 C 1.39869 * 125.90295 * 124.99796 * 9 8 6 11 11 C 1.35312 * 107.91889 * 180.22479 * 10 9 8 12 12 N 1.34951 * 107.74772 * 359.61173 * 11 10 9 13 13 C 1.46501 * 126.03602 * 180.15058 * 12 11 10 14 14 N 1.30837 * 125.89517 * 304.98057 * 9 8 6 15 15 N 1.46899 * 109.47014 * 120.00561 * 2 1 3 16 16 C 1.46897 * 111.00536 * 58.95222 * 15 2 1 17 17 C 1.46901 * 110.99881 * 294.99080 * 15 2 1 18 18 C 1.50702 * 109.46916 * 190.00187 * 17 15 2 19 19 O 1.21289 * 120.00312 * 0.02562 * 18 17 15 20 20 N 1.34784 * 119.99591 * 180.02562 * 18 17 15 21 21 C 1.37090 * 119.99557 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00906 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99793 * 179.97438 * 21 20 18 24 24 N 1.31416 * 120.00122 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99958 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47226 * 90.00110 * 25 23 21 27 27 H 1.48510 * 109.47124 * 209.99954 * 25 23 21 28 28 H 1.48502 * 109.47069 * 329.99780 * 25 23 21 29 29 H 1.09006 * 109.46757 * 299.99727 * 1 2 3 30 30 H 1.08998 * 109.47132 * 59.99474 * 1 2 3 31 31 H 1.08997 * 109.47385 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46928 * 64.99896 * 4 2 1 33 33 H 1.09007 * 109.46809 * 305.00419 * 4 2 1 34 34 H 0.97007 * 120.00142 * 359.97438 * 5 4 2 35 35 H 1.09002 * 109.47210 * 59.99659 * 8 6 5 36 36 H 1.09007 * 109.47214 * 299.99761 * 8 6 5 37 37 H 1.08002 * 126.03560 * 359.95589 * 10 9 8 38 38 H 1.08008 * 126.12506 * 179.75891 * 11 10 9 39 39 H 1.08999 * 109.47098 * 270.25891 * 13 12 11 40 40 H 1.08998 * 109.47303 * 30.25669 * 13 12 11 41 41 H 1.08994 * 109.47129 * 150.25391 * 13 12 11 42 42 H 1.08996 * 109.47296 * 59.99426 * 16 15 2 43 43 H 1.08994 * 109.47614 * 180.02562 * 16 15 2 44 44 H 1.09008 * 109.46908 * 300.00046 * 16 15 2 45 45 H 1.08996 * 109.47161 * 310.00272 * 17 15 2 46 46 H 1.09002 * 109.46490 * 70.00427 * 17 15 2 47 47 H 0.96995 * 119.99911 * 0.02562 * 20 18 17 48 48 H 0.96999 * 119.99570 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.4999 -0.8265 -1.1907 6 6 4.1730 -1.4284 -2.1913 7 8 3.5698 -1.8833 -3.1401 8 6 5.6748 -1.5362 -2.1313 9 6 6.1772 -2.2467 -3.3617 10 6 7.1369 -1.7602 -4.2554 11 6 7.3091 -2.6868 -5.2263 12 7 6.4939 -3.7267 -4.9519 13 6 6.3629 -4.9517 -5.7447 14 7 5.7910 -3.4253 -3.7783 15 7 2.0196 -0.6926 1.1994 16 6 1.5283 -2.0762 1.2459 17 6 1.6488 0.0391 2.4180 18 6 2.3681 -0.5574 3.6004 19 8 3.1163 -1.4989 3.4433 20 7 2.1798 -0.0444 4.8325 21 6 2.8337 -0.5873 5.9082 22 1 3.5000 -1.4257 5.7684 23 6 2.6400 -0.0582 7.1784 24 7 3.2672 -0.5782 8.2095 25 14 1.4882 1.3924 7.4202 26 1 0.1151 0.8948 7.6890 27 1 1.9535 2.2074 8.5712 28 1 1.4804 2.2283 6.1928 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -0.1583 -2.1370 33 1 1.6052 -1.7198 -1.2952 34 1 3.9824 -0.4623 -0.4320 35 1 5.9636 -2.0993 -1.2438 36 1 6.1093 -0.5375 -2.0853 37 1 7.6467 -0.8107 -4.1854 38 1 7.9808 -2.6092 -6.0686 39 1 5.5877 -4.8154 -6.4987 40 1 7.3117 -5.1707 -6.2345 41 1 6.0920 -5.7804 -5.0906 42 1 1.8761 -2.6151 0.3646 43 1 1.9053 -2.5657 2.1438 44 1 0.4384 -2.0743 1.2639 45 1 1.9300 1.0868 2.3125 46 1 0.5723 -0.0346 2.5725 47 1 1.5811 0.7084 4.9582 48 1 3.1317 -0.2090 9.0962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734033597.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:02 Heat of formation + Delta-G solvation = 26.680773 kcal Electronic energy + Delta-G solvation = -28797.965714 eV Core-core repulsion = 24697.650218 eV Total energy + Delta-G solvation = -4100.315496 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.30974 -39.72033 -38.86253 -37.40127 -34.33687 -33.95934 -33.81344 -31.69009 -31.27643 -30.49083 -29.74686 -28.09261 -26.69943 -25.58339 -25.22369 -23.60224 -21.32253 -20.86204 -20.11589 -19.41357 -19.29114 -18.23974 -17.15871 -16.92462 -16.55336 -16.05412 -15.64914 -15.40126 -15.03340 -14.97732 -14.90576 -14.27646 -14.13210 -13.87323 -13.71674 -13.33541 -13.17088 -13.07638 -12.98469 -12.88973 -12.64916 -12.53927 -12.48289 -12.19916 -12.04256 -11.80234 -11.65691 -11.33803 -11.26524 -11.01071 -10.78953 -10.64983 -10.60149 -9.98254 -9.79001 -9.54071 -9.32003 -8.91429 -8.67696 -8.59152 -8.18731 -7.96556 -6.31610 -3.82919 1.79417 2.37905 2.62025 2.78466 3.01376 3.05663 3.14274 3.37279 3.73428 3.90871 4.09522 4.27471 4.58827 4.68203 4.70188 4.76657 4.89708 4.95489 5.03576 5.10518 5.15543 5.17538 5.20639 5.38878 5.41703 5.48876 5.51492 5.53813 5.66379 5.67384 5.73206 5.80587 5.85304 5.90067 5.92632 5.97177 6.12799 6.50520 6.52273 6.57537 6.87381 7.13339 7.27488 7.57962 7.65021 7.68753 8.14301 8.37975 8.59743 8.95063 9.42132 9.83220 10.81498 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017583 B = 0.002087 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.094964 B =13412.001931 C =14318.257241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.064 3.936 3 H 0.089 0.911 4 C 0.133 3.867 5 N -0.716 5.716 6 C 0.515 3.485 7 O -0.536 6.536 8 C -0.061 4.061 9 C 0.086 3.914 10 C -0.266 4.266 11 C 0.047 3.953 12 N -0.379 5.379 13 C 0.103 3.897 14 N -0.262 5.262 15 N -0.510 5.510 16 C 0.015 3.985 17 C 0.041 3.959 18 C 0.453 3.547 19 O -0.558 6.558 20 N -0.592 5.592 21 C -0.303 4.303 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.412 0.588 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.147 0.853 38 H 0.172 0.828 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.020 0.980 45 H 0.089 0.911 46 H 0.051 0.949 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.005 1.559 -25.525 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.045 4.045 3 H 0.107 0.893 4 C 0.009 3.991 5 N -0.369 5.369 6 C 0.300 3.700 7 O -0.413 6.413 8 C -0.103 4.103 9 C -0.082 4.082 10 C -0.296 4.296 11 C -0.099 4.099 12 N -0.162 5.162 13 C -0.038 4.038 14 N -0.084 5.084 15 N -0.234 5.234 16 C -0.132 4.132 17 C -0.090 4.090 18 C 0.238 3.762 19 O -0.440 6.440 20 N -0.231 5.231 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.248 0.752 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.165 0.835 38 H 0.189 0.811 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.038 0.962 45 H 0.107 0.893 46 H 0.069 0.931 47 H 0.202 0.798 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.883 -0.589 -25.985 26.060 hybrid contribution -1.052 2.114 0.598 2.436 sum 0.831 1.525 -25.388 25.447 Atomic orbital electron populations 1.22409 0.96717 1.02869 1.02584 1.22053 0.93407 0.98653 0.90411 0.89322 1.21324 0.80585 1.00781 0.96436 1.45806 1.07488 1.59903 1.23713 1.20325 0.89462 0.77768 0.82411 1.90719 1.70093 1.46993 1.33483 1.20029 0.92861 1.01873 0.95500 1.21557 0.96395 0.93203 0.97031 1.21345 1.06834 1.03054 0.98333 1.22467 0.97369 0.89142 1.00882 1.48546 1.31693 1.15434 1.20477 1.21815 1.02998 0.84217 0.94812 1.77462 1.16399 1.16821 0.97735 1.61811 1.58962 1.02547 1.00036 1.22615 0.96753 0.89282 1.04571 1.21914 0.98113 0.98545 0.90436 1.19647 0.86462 0.86743 0.83313 1.90533 1.39672 1.29394 1.84380 1.42217 1.42531 1.31265 1.07112 1.19415 1.23994 1.15836 0.83966 0.86270 1.25043 0.97774 0.98126 0.95286 1.69624 1.41827 1.41256 0.99452 0.86678 0.81468 0.82659 0.78598 1.19723 1.20209 1.19496 0.91808 0.91895 0.91774 0.91459 0.91527 0.75204 0.86877 0.86956 0.83513 0.81131 0.90889 0.89640 0.89310 0.91828 0.88599 0.96157 0.89329 0.93126 0.79782 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.80 8.50 37.16 0.32 -1.49 16 2 C 0.06 0.70 2.50 -67.71 -0.17 0.53 16 3 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16 4 C 0.13 1.55 4.69 -4.04 -0.02 1.53 16 5 N -0.72 -8.57 5.39 -60.30 -0.32 -8.89 16 6 C 0.52 6.99 7.82 -10.99 -0.09 6.90 16 7 O -0.54 -9.38 15.56 5.55 0.09 -9.29 16 8 C -0.06 -0.67 6.28 -29.04 -0.18 -0.85 16 9 C 0.09 1.11 6.01 -82.41 -0.50 0.61 16 10 C -0.27 -2.78 10.72 -40.01 -0.43 -3.21 16 11 C 0.05 0.43 11.49 -17.22 -0.20 0.23 16 12 N -0.38 -4.21 4.01 -68.16 -0.27 -4.49 16 13 C 0.10 0.68 11.47 59.85 0.69 1.37 16 14 N -0.26 -3.87 11.92 33.67 0.40 -3.47 16 15 N -0.51 -7.29 3.93 -236.33 -0.93 -8.22 16 16 C 0.02 0.23 8.46 60.06 0.51 0.74 16 17 C 0.04 0.64 4.89 -4.97 -0.02 0.61 16 18 C 0.45 9.76 7.47 -10.98 -0.08 9.68 16 19 O -0.56 -14.17 13.91 5.55 0.08 -14.09 16 20 N -0.59 -13.62 5.09 -10.96 -0.06 -13.67 16 21 C -0.30 -8.39 10.16 -14.94 -0.15 -8.54 16 22 H 0.12 3.78 7.39 -52.48 -0.39 3.39 16 23 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 24 N -0.88 -25.48 13.96 55.50 0.77 -24.71 16 25 Si 0.88 19.05 27.74 -169.99 -4.71 14.34 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.27 -5.28 6.52 56.52 0.37 -4.92 16 29 H 0.06 0.62 6.75 -51.93 -0.35 0.27 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.66 6.39 -51.93 -0.33 0.33 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.87 6.70 -51.93 -0.35 0.52 16 34 H 0.41 4.64 8.14 -40.82 -0.33 4.31 16 35 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.11 0.87 8.12 -51.93 -0.42 0.44 16 37 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.17 0.85 8.06 -52.48 -0.42 0.43 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.94 6.44 -51.93 -0.33 0.61 16 43 H 0.10 1.82 5.82 -51.93 -0.30 1.52 16 44 H 0.02 0.28 6.28 -51.92 -0.33 -0.05 16 45 H 0.09 1.18 8.00 -51.93 -0.42 0.77 16 46 H 0.05 0.71 6.94 -51.93 -0.36 0.35 16 47 H 0.37 7.48 5.76 -40.82 -0.24 7.24 16 48 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 392.25 15.07 5.91 5.91 Total: -1.00 -37.36 392.25 -6.58 -43.94 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -7.11 Total: 13.52 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -0.42 Total: 9.12 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -0.41 Total: -63.45 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.16 Total: -23.38 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.34 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.36 -6.58 -43.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734033597.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.624 kcal (2) G-P(sol) polarization free energy of solvation -37.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds